Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46768 * 2 1 4 4 N 1.46908 * 109.46784 * 174.73904 * 3 2 1 5 5 C 1.48556 * 110.99942 * 174.68439 * 4 3 2 6 6 C 1.54381 * 104.59817 * 200.95958 * 5 4 3 7 7 C 1.54255 * 105.05792 * 23.85554 * 6 5 4 8 8 H 1.09005 * 110.32648 * 241.00222 * 7 6 5 9 9 C 1.52994 * 110.32725 * 118.89521 * 7 6 5 10 10 N 1.46899 * 109.46947 * 66.45371 * 9 7 6 11 11 C 1.46908 * 110.99791 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46612 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47597 * 59.99636 * 12 11 10 14 14 C 1.53004 * 109.47010 * 299.99229 * 12 11 10 15 15 C 1.53007 * 109.46585 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.46728 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00354 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99595 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00150 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99644 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46541 * 269.99509 * 20 18 16 22 22 H 1.48488 * 109.47290 * 29.99464 * 20 18 16 23 23 H 1.48498 * 109.46965 * 150.00144 * 20 18 16 24 24 C 1.48559 * 110.99928 * 59.26712 * 4 3 2 25 25 H 1.08992 * 109.47561 * 300.00350 * 1 2 3 26 26 H 1.09005 * 109.46913 * 60.00372 * 1 2 3 27 27 H 1.08995 * 109.47138 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47329 * 240.00488 * 2 1 3 29 29 H 1.08994 * 109.47200 * 120.00049 * 2 1 3 30 30 H 1.09000 * 109.47337 * 54.74268 * 3 2 1 31 31 H 1.08999 * 109.47717 * 294.73590 * 3 2 1 32 32 H 1.09005 * 110.41172 * 82.18482 * 5 4 3 33 33 H 1.08997 * 110.41616 * 319.74659 * 5 4 3 34 34 H 1.09002 * 110.32227 * 264.96291 * 6 5 4 35 35 H 1.09000 * 110.40934 * 142.79486 * 6 5 4 36 36 H 1.09004 * 109.47434 * 306.45302 * 9 7 6 37 37 H 1.09001 * 109.47852 * 186.45261 * 9 7 6 38 38 H 1.00897 * 110.99753 * 303.95167 * 10 9 7 39 39 H 1.08997 * 109.47495 * 60.00092 * 11 10 9 40 40 H 1.09007 * 109.46986 * 299.99301 * 11 10 9 41 41 H 1.08999 * 109.47305 * 179.97438 * 13 12 11 42 42 H 1.08998 * 109.47378 * 300.00124 * 13 12 11 43 43 H 1.08999 * 109.47057 * 60.00050 * 13 12 11 44 44 H 1.09003 * 109.47098 * 300.00420 * 14 12 11 45 45 H 1.08998 * 109.46617 * 60.00701 * 14 12 11 46 46 H 1.08999 * 109.46756 * 180.02562 * 14 12 11 47 47 H 1.08997 * 109.47239 * 60.00074 * 15 12 11 48 48 H 1.08999 * 109.47436 * 299.99562 * 15 12 11 49 49 H 0.97005 * 119.99361 * 180.02562 * 19 18 16 50 50 H 1.09007 * 110.41402 * 40.26289 * 24 4 3 51 51 H 1.08999 * 110.41444 * 277.81645 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5035 1.4445 0.1270 5 6 4.0468 2.8216 0.0029 6 6 5.5279 2.6221 -0.3841 7 6 5.5866 1.2266 -1.0389 8 1 6.2474 0.5702 -0.4726 9 6 6.0649 1.3392 -2.4877 10 7 7.4619 1.7931 -2.5083 11 6 7.9560 1.9135 -3.8866 12 6 9.4109 2.3868 -3.8671 13 6 10.2669 1.3732 -3.1051 14 6 9.4950 3.7484 -3.1745 15 6 9.9257 2.5116 -5.3025 16 6 11.3585 2.9783 -5.2834 17 1 11.8526 3.1667 -4.3418 18 6 12.0386 3.1649 -6.4682 19 7 11.4371 2.9350 -7.6149 20 14 13.8149 3.7428 -6.4445 21 1 13.8529 5.2270 -6.4771 22 1 14.4768 3.2577 -5.2070 23 1 14.5267 3.2033 -7.6309 24 6 4.1360 0.7003 -0.9924 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6017 1.9829 0.8391 31 1 1.7556 1.9285 -0.9333 32 1 3.9701 3.3477 0.9545 33 1 3.5201 3.3691 -0.7787 34 1 6.1584 2.6500 0.5047 35 1 5.8416 3.3871 -1.0943 36 1 5.4418 2.0568 -3.0215 37 1 5.9924 0.3649 -2.9712 38 1 7.5664 2.6640 -2.0097 39 1 7.3460 2.6353 -4.4296 40 1 7.8966 0.9433 -4.3799 41 1 11.3034 1.7102 -3.0916 42 1 9.9002 1.2838 -2.0825 43 1 10.2070 0.4032 -3.5986 44 1 8.8852 4.4706 -3.7174 45 1 9.1283 3.6591 -2.1519 46 1 10.5314 4.0858 -3.1610 47 1 9.3160 3.2335 -5.8458 48 1 9.8659 1.5414 -5.7957 49 1 11.9157 3.0660 -8.4484 50 1 3.6233 0.9158 -1.9300 51 1 4.1264 -0.3707 -0.7904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174299625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = -28.573121 kcal Electronic energy + Delta-G solvation = -22743.305673 eV Core-core repulsion = 19676.065629 eV Total energy + Delta-G solvation = -3067.240044 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.57081 -37.59484 -35.47312 -33.83812 -32.26830 -30.76616 -29.38212 -27.05292 -26.37154 -26.24728 -25.09935 -23.85011 -22.16153 -22.02924 -20.77856 -19.85581 -17.87662 -16.57009 -16.26187 -15.99033 -15.69485 -14.81463 -14.73416 -14.45942 -14.05705 -13.84446 -13.45306 -13.27480 -13.05612 -12.90844 -12.61962 -12.48983 -12.23802 -12.09642 -11.97579 -11.69098 -11.48582 -11.21767 -11.10675 -11.00704 -10.96752 -10.89526 -10.76755 -10.68342 -10.58951 -10.46600 -10.22697 -10.08523 -9.66384 -9.00039 -8.81520 -8.74149 -8.30512 -8.06232 -5.95003 -3.94999 3.34069 3.40674 3.43830 3.70252 4.28748 4.41149 4.49977 4.65983 4.70313 4.76694 4.91124 5.01576 5.06774 5.19161 5.29480 5.35595 5.37873 5.40730 5.45349 5.47621 5.55965 5.64919 5.68474 5.72764 5.75260 5.80030 5.82938 5.89288 5.92791 6.00108 6.08120 6.20450 6.28591 6.36711 6.52937 6.60682 6.68878 6.78572 6.81223 6.85061 7.22719 7.25283 7.28837 7.42896 7.69528 7.73399 7.87471 8.05437 8.49962 9.10400 9.67658 11.16638 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044391 B = 0.002504 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.601749 B =11179.492840 C =11404.381661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.044 3.956 4 N -0.512 5.512 5 C 0.032 3.968 6 C -0.120 4.120 7 C -0.089 4.089 8 H 0.089 0.911 9 C 0.065 3.935 10 N -0.686 5.686 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.033 3.967 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.053 3.947 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.288 1.288 24 C 0.038 3.962 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.337 0.663 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.258 0.742 50 H 0.043 0.957 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.048 -3.127 15.336 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.084 4.084 4 N -0.236 5.236 5 C -0.096 4.096 6 C -0.158 4.158 7 C -0.109 4.109 8 H 0.107 0.893 9 C -0.065 4.065 10 N -0.318 5.318 11 C -0.059 4.059 12 C -0.059 4.059 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.214 1.214 24 C -0.090 4.090 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.652 -3.994 15.757 24.742 hybrid contribution 0.216 1.548 -1.370 2.079 sum -18.436 -2.446 14.387 23.513 Atomic orbital electron populations 1.21736 0.95595 1.01814 1.01745 1.21546 0.95576 0.96260 1.02726 1.22331 0.88276 0.97440 1.00399 1.65438 1.05193 1.10664 1.42269 1.23116 0.95353 0.90446 1.00668 1.22364 0.95597 0.96974 1.00907 1.21926 0.95617 0.96946 0.96363 0.89251 1.21981 0.89400 1.00167 0.94901 1.60577 1.17950 1.36670 1.16580 1.22108 0.96446 0.99901 0.87416 1.20625 0.91743 0.94285 0.99208 1.21597 0.99594 0.97878 0.98267 1.21773 1.02416 0.97026 0.97430 1.19127 0.95731 0.96858 0.88695 1.21242 0.97144 1.43918 0.92118 0.92279 1.25030 0.97952 0.95949 0.95778 1.69971 1.36801 1.49786 0.97216 0.86655 0.85414 0.78810 0.77485 1.20852 1.19903 1.21393 1.23145 0.94128 0.99283 0.92473 0.92660 0.92884 0.92497 0.91985 0.91033 0.90768 0.94855 0.90251 0.94053 0.90725 0.91444 0.95949 0.91159 0.84297 0.96054 0.91625 0.92710 0.93848 0.94194 0.94180 0.94819 0.91693 0.96984 0.96684 0.93193 0.93826 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.90 5.64 -26.73 -0.15 -1.06 16 3 C 0.04 0.36 4.93 -3.82 -0.02 0.34 16 4 N -0.51 -4.93 5.45 -229.96 -1.25 -6.18 16 5 C 0.03 0.30 6.49 -2.18 -0.01 0.28 16 6 C -0.12 -1.19 6.15 -25.35 -0.16 -1.34 16 7 C -0.09 -0.94 3.31 -89.24 -0.30 -1.24 16 8 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 9 C 0.07 0.80 4.86 -3.83 -0.02 0.78 16 10 N -0.69 -9.91 5.71 -113.77 -0.65 -10.56 16 11 C 0.07 1.22 4.65 -3.82 -0.02 1.20 16 12 C -0.06 -1.17 0.60 -154.50 -0.09 -1.26 16 13 C -0.12 -2.27 8.06 37.15 0.30 -1.97 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 16 C -0.51 -13.91 7.65 -34.44 -0.26 -14.17 16 17 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.04 0.37 4.88 -2.18 -0.01 0.36 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.47 7.21 -51.93 -0.37 0.10 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.28 7.97 -51.93 -0.41 -0.13 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.38 7.89 -51.93 -0.41 -0.03 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.69 6.95 -51.93 -0.36 0.33 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.34 4.69 5.46 -39.29 -0.21 4.48 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 42 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 46 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 50 H 0.04 0.43 7.70 -51.93 -0.40 0.03 16 51 H 0.08 0.76 7.78 -51.93 -0.40 0.36 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -28.93 382.47 -10.91 -39.84 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -10.20 Total: -0.70 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.29 Total: -18.59 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -1.17 Total: -43.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.93 -10.91 -39.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174299625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.266 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds