Wall clock time and date at job start Tue Mar 31 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46768 * 2 1 4 4 N 1.46908 * 109.46784 * 174.73904 * 3 2 1 5 5 C 1.48556 * 110.99942 * 174.68439 * 4 3 2 6 6 C 1.54381 * 104.59817 * 200.95958 * 5 4 3 7 7 C 1.54255 * 105.05792 * 23.85554 * 6 5 4 8 8 H 1.09005 * 110.32648 * 241.00222 * 7 6 5 9 9 C 1.52994 * 110.32725 * 118.89521 * 7 6 5 10 10 N 1.46899 * 109.46947 * 66.45371 * 9 7 6 11 11 C 1.46908 * 110.99791 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46612 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47597 * 59.99636 * 12 11 10 14 14 C 1.53004 * 109.47010 * 299.99229 * 12 11 10 15 15 C 1.53007 * 109.46585 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.46728 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00354 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99595 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00150 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99644 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46541 * 269.99509 * 20 18 16 22 22 H 1.48488 * 109.47290 * 29.99464 * 20 18 16 23 23 H 1.48498 * 109.46965 * 150.00144 * 20 18 16 24 24 C 1.48559 * 110.99928 * 59.26712 * 4 3 2 25 25 H 1.08992 * 109.47561 * 300.00350 * 1 2 3 26 26 H 1.09005 * 109.46913 * 60.00372 * 1 2 3 27 27 H 1.08995 * 109.47138 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47329 * 240.00488 * 2 1 3 29 29 H 1.08994 * 109.47200 * 120.00049 * 2 1 3 30 30 H 1.09000 * 109.47337 * 54.74268 * 3 2 1 31 31 H 1.08999 * 109.47717 * 294.73590 * 3 2 1 32 32 H 1.09005 * 110.41172 * 82.18482 * 5 4 3 33 33 H 1.08997 * 110.41616 * 319.74659 * 5 4 3 34 34 H 1.09002 * 110.32227 * 264.96291 * 6 5 4 35 35 H 1.09000 * 110.40934 * 142.79486 * 6 5 4 36 36 H 1.09004 * 109.47434 * 306.45302 * 9 7 6 37 37 H 1.09001 * 109.47852 * 186.45261 * 9 7 6 38 38 H 1.00897 * 110.99753 * 303.95167 * 10 9 7 39 39 H 1.08997 * 109.47495 * 60.00092 * 11 10 9 40 40 H 1.09007 * 109.46986 * 299.99301 * 11 10 9 41 41 H 1.08999 * 109.47305 * 179.97438 * 13 12 11 42 42 H 1.08998 * 109.47378 * 300.00124 * 13 12 11 43 43 H 1.08999 * 109.47057 * 60.00050 * 13 12 11 44 44 H 1.09003 * 109.47098 * 300.00420 * 14 12 11 45 45 H 1.08998 * 109.46617 * 60.00701 * 14 12 11 46 46 H 1.08999 * 109.46756 * 180.02562 * 14 12 11 47 47 H 1.08997 * 109.47239 * 60.00074 * 15 12 11 48 48 H 1.08999 * 109.47436 * 299.99562 * 15 12 11 49 49 H 0.97005 * 119.99361 * 180.02562 * 19 18 16 50 50 H 1.09007 * 110.41402 * 40.26289 * 24 4 3 51 51 H 1.08999 * 110.41444 * 277.81645 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5035 1.4445 0.1270 5 6 4.0468 2.8216 0.0029 6 6 5.5279 2.6221 -0.3841 7 6 5.5866 1.2266 -1.0389 8 1 6.2474 0.5702 -0.4726 9 6 6.0649 1.3392 -2.4877 10 7 7.4619 1.7931 -2.5083 11 6 7.9560 1.9135 -3.8866 12 6 9.4109 2.3868 -3.8671 13 6 10.2669 1.3732 -3.1051 14 6 9.4950 3.7484 -3.1745 15 6 9.9257 2.5116 -5.3025 16 6 11.3585 2.9783 -5.2834 17 1 11.8526 3.1667 -4.3418 18 6 12.0386 3.1649 -6.4682 19 7 11.4371 2.9350 -7.6149 20 14 13.8149 3.7428 -6.4445 21 1 13.8529 5.2270 -6.4771 22 1 14.4768 3.2577 -5.2070 23 1 14.5267 3.2033 -7.6309 24 6 4.1360 0.7003 -0.9924 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6017 1.9829 0.8391 31 1 1.7556 1.9285 -0.9333 32 1 3.9701 3.3477 0.9545 33 1 3.5201 3.3691 -0.7787 34 1 6.1584 2.6500 0.5047 35 1 5.8416 3.3871 -1.0943 36 1 5.4418 2.0568 -3.0215 37 1 5.9924 0.3649 -2.9712 38 1 7.5664 2.6640 -2.0097 39 1 7.3460 2.6353 -4.4296 40 1 7.8966 0.9433 -4.3799 41 1 11.3034 1.7102 -3.0916 42 1 9.9002 1.2838 -2.0825 43 1 10.2070 0.4032 -3.5986 44 1 8.8852 4.4706 -3.7174 45 1 9.1283 3.6591 -2.1519 46 1 10.5314 4.0858 -3.1610 47 1 9.3160 3.2335 -5.8458 48 1 9.8659 1.5414 -5.7957 49 1 11.9157 3.0660 -8.4484 50 1 3.6233 0.9158 -1.9300 51 1 4.1264 -0.3707 -0.7904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174299625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:51 Heat of formation + Delta-G solvation = -45.552806 kcal Electronic energy + Delta-G solvation = -22744.041967 eV Core-core repulsion = 19676.065629 eV Total energy + Delta-G solvation = -3067.976338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38716 -39.06161 -36.50152 -35.01509 -34.07119 -31.72690 -30.18431 -28.97418 -27.89238 -27.41131 -26.16650 -25.17040 -23.76638 -22.74227 -21.50777 -20.69554 -19.50342 -18.33264 -17.46659 -16.93237 -16.61332 -16.42078 -15.75891 -15.60320 -15.31794 -15.08071 -14.71560 -14.25190 -14.13023 -13.93599 -13.88433 -13.81724 -13.51521 -13.34938 -12.93164 -12.76442 -12.69774 -12.69307 -12.46868 -12.25747 -12.22201 -12.15840 -12.02535 -11.83829 -11.71153 -11.68968 -11.50127 -11.42567 -11.34903 -10.85789 -10.70724 -10.50546 -9.47628 -9.28811 -8.13957 -6.20946 1.40959 1.41701 1.52491 2.43785 2.95794 3.19791 3.28174 3.68451 3.81431 3.99244 4.06436 4.12339 4.19409 4.22573 4.30544 4.38826 4.45153 4.49268 4.52394 4.61948 4.67161 4.70879 4.77469 4.78793 4.82670 4.84570 4.87110 4.96054 4.97694 5.08433 5.09283 5.18170 5.21320 5.22159 5.24057 5.28487 5.37220 5.40632 5.51950 5.54219 5.58971 5.66069 5.86776 5.87879 5.92908 6.08300 6.10881 6.37129 6.54705 6.94177 7.46259 8.98331 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044391 B = 0.002504 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.601749 B =11179.492840 C =11404.381661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.044 3.956 4 N -0.521 5.521 5 C 0.033 3.967 6 C -0.119 4.119 7 C -0.082 4.082 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.681 5.681 11 C 0.082 3.918 12 C -0.055 4.055 13 C -0.107 4.107 14 C -0.123 4.123 15 C 0.039 3.961 16 C -0.513 4.513 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.263 1.263 23 H -0.287 1.287 24 C 0.042 3.958 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.344 0.656 39 H 0.015 0.985 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.068 0.932 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.048 0.952 47 H -0.017 1.017 48 H -0.016 1.016 49 H 0.259 0.741 50 H 0.042 0.958 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.363 -2.809 17.343 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.084 4.084 4 N -0.245 5.245 5 C -0.095 4.095 6 C -0.157 4.157 7 C -0.102 4.102 8 H 0.102 0.898 9 C -0.061 4.061 10 N -0.313 5.313 11 C -0.047 4.047 12 C -0.055 4.055 13 C -0.164 4.164 14 C -0.180 4.180 15 C 0.002 3.998 16 C -0.551 4.551 17 H 0.085 0.915 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.187 1.187 23 H -0.213 1.213 24 C -0.086 4.086 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.164 0.836 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.977 -3.673 17.790 26.270 hybrid contribution 0.251 1.425 -1.990 2.460 sum -18.726 -2.248 15.801 24.604 Atomic orbital electron populations 1.21716 0.94602 1.02274 1.02036 1.21514 0.96423 0.95606 1.02248 1.22368 0.87484 0.98016 1.00521 1.65457 1.06035 1.10829 1.42133 1.23127 0.94839 0.90392 1.01119 1.22352 0.96176 0.96280 1.00884 1.21823 0.95980 0.97466 0.94909 0.89828 1.21990 0.87971 0.99870 0.96227 1.60508 1.19533 1.36943 1.14365 1.21811 0.94724 0.98995 0.89179 1.20493 0.93380 0.95793 0.95884 1.21504 0.98562 0.96958 0.99417 1.21690 1.01490 0.95648 0.99163 1.19015 0.94994 0.94062 0.91752 1.21620 0.98067 1.43058 0.92365 0.91537 1.25953 1.02619 0.96289 0.95491 1.70115 1.38704 1.51228 0.97901 0.85551 0.79905 0.78479 0.77754 1.20055 1.18679 1.21316 1.23085 0.93465 0.99492 0.92564 0.92159 0.92796 0.91984 0.92410 0.91520 0.90186 0.95054 0.89409 0.94074 0.90391 0.91629 0.95908 0.91398 0.83614 0.96689 0.92613 0.94256 0.91309 0.95144 0.94518 0.91381 0.93340 0.99863 0.99810 0.93196 0.93993 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.60 5.64 30.59 0.17 -1.42 16 3 C 0.04 0.66 4.93 86.30 0.43 1.08 16 4 N -0.52 -9.12 5.45 -881.46 -4.81 -13.92 16 5 C 0.03 0.55 6.49 86.45 0.56 1.11 16 6 C -0.12 -2.10 6.15 31.49 0.19 -1.91 16 7 C -0.08 -1.59 3.31 -9.90 -0.03 -1.63 16 8 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 9 C 0.07 1.58 4.86 86.30 0.42 2.00 16 10 N -0.68 -18.50 5.71 -513.86 -2.94 -21.44 16 11 C 0.08 2.84 4.65 86.30 0.40 3.24 16 12 C -0.06 -2.20 0.60 -52.18 -0.03 -2.23 16 13 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 14 C -0.12 -4.41 7.89 71.98 0.57 -3.85 16 15 C 0.04 2.06 4.04 29.85 0.12 2.18 16 16 C -0.51 -28.55 7.65 25.60 0.20 -28.36 16 17 H 0.07 3.54 5.68 -2.91 -0.02 3.53 16 18 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 19 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 20 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.04 0.75 4.88 86.45 0.42 1.18 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.81 7.21 -2.39 -0.02 0.79 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.03 0.48 7.97 -2.39 -0.02 0.46 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.04 0.68 7.89 -2.39 -0.02 0.67 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.19 6.95 -2.39 -0.02 1.17 16 36 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.34 8.68 5.46 -89.70 -0.49 8.19 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 42 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 46 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 50 H 0.04 0.76 7.70 -2.38 -0.02 0.74 16 51 H 0.08 1.46 7.78 -2.39 -0.02 1.44 16 Total: -1.00 -62.24 382.47 0.10 -62.14 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.36 Total: 16.88 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 5.17 Total: -32.92 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -7.46 Total: -92.82 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.24 0.10 -62.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174299625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.587 kcal (2) G-P(sol) polarization free energy of solvation -62.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds