Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 N 1.46900 * 109.47463 * 179.97438 * 3 2 1 5 5 C 1.47843 * 110.99888 * 290.84466 * 4 3 2 6 6 C 1.54904 * 104.79405 * 213.63369 * 5 4 3 7 7 C 1.55139 * 101.65629 * 37.06983 * 6 5 4 8 8 H 1.08996 * 110.85104 * 82.79825 * 7 6 5 9 9 C 1.52999 * 110.70659 * 205.96492 * 7 6 5 10 10 N 1.46907 * 109.46968 * 288.59453 * 9 7 6 11 11 C 1.46900 * 110.99677 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46854 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46833 * 299.99552 * 12 11 10 14 14 C 1.52997 * 109.47315 * 59.99651 * 12 11 10 15 15 C 1.53003 * 109.47118 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47162 * 179.97438 * 15 12 11 17 17 H 1.07998 * 119.99968 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99923 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00160 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99652 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47450 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46870 * 119.99989 * 20 18 16 23 23 H 1.48503 * 109.46864 * 239.99459 * 20 18 16 24 24 C 1.47446 * 111.00255 * 170.00015 * 4 3 2 25 25 H 1.09005 * 109.47542 * 60.00035 * 1 2 3 26 26 H 1.08999 * 109.47487 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47261 * 300.00069 * 1 2 3 28 28 H 1.08998 * 109.47261 * 239.99931 * 2 1 3 29 29 H 1.08996 * 109.47422 * 120.00189 * 2 1 3 30 30 H 1.08998 * 109.47085 * 59.99823 * 3 2 1 31 31 H 1.09000 * 109.47513 * 299.99767 * 3 2 1 32 32 H 1.08998 * 110.37465 * 332.46027 * 5 4 3 33 33 H 1.09003 * 110.37404 * 94.80784 * 5 4 3 34 34 H 1.09005 * 110.99350 * 278.97811 * 6 5 4 35 35 H 1.08998 * 110.99317 * 155.16278 * 6 5 4 36 36 H 1.08994 * 109.47457 * 48.60117 * 9 7 6 37 37 H 1.09003 * 109.47043 * 168.59968 * 9 7 6 38 38 H 1.00901 * 110.99376 * 56.05141 * 10 9 7 39 39 H 1.09003 * 109.47319 * 299.99904 * 11 10 9 40 40 H 1.08999 * 109.47059 * 60.00308 * 11 10 9 41 41 H 1.09001 * 109.46712 * 60.00388 * 13 12 11 42 42 H 1.08996 * 109.47366 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47409 * 300.00513 * 13 12 11 44 44 H 1.09001 * 109.46858 * 60.00864 * 14 12 11 45 45 H 1.08998 * 109.46739 * 179.97438 * 14 12 11 46 46 H 1.08993 * 109.47201 * 300.00186 * 14 12 11 47 47 H 1.09005 * 109.46722 * 299.99687 * 15 12 11 48 48 H 1.08999 * 109.47271 * 59.99397 * 15 12 11 49 49 H 0.96999 * 120.00002 * 180.02562 * 19 18 16 50 50 H 1.08997 * 109.88511 * 242.66682 * 24 4 3 51 51 H 1.08994 * 109.88544 * 3.85008 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0382 0.9516 1.2908 6 6 5.3440 1.7546 1.5139 7 6 4.9554 3.1474 0.9519 8 1 4.4145 3.7296 1.6978 9 6 6.1967 3.9035 0.4740 10 7 6.9899 4.3263 1.6360 11 6 8.1922 5.0577 1.2145 12 6 8.9910 5.4801 2.4491 13 6 8.1271 6.3842 3.3308 14 6 9.4015 4.2370 3.2410 15 6 10.2430 6.2424 2.0103 16 6 11.0295 6.6591 3.2263 17 1 10.6720 6.4059 4.2135 18 6 12.2055 7.3635 3.0787 19 7 12.6411 7.6713 1.8766 20 14 13.1800 7.8805 4.5861 21 1 12.4808 7.4160 5.8110 22 1 14.5356 7.2767 4.5303 23 1 13.2983 9.3606 4.6154 24 6 4.0374 2.7981 -0.2384 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.3280 1.1516 2.0931 33 1 4.2542 -0.1151 1.2312 34 1 6.1697 1.3221 0.9489 35 1 5.5883 1.8158 2.5744 36 1 6.7983 3.2511 -0.1587 37 1 5.8907 4.7809 -0.0958 38 1 7.2313 3.5365 2.2157 39 1 8.8079 4.4135 0.5867 40 1 7.8997 5.9431 0.6501 41 1 7.2350 5.8415 3.6434 42 1 8.6962 6.6856 4.2101 43 1 7.8346 7.2698 2.7666 44 1 10.0171 3.5931 2.6129 45 1 9.9710 4.5381 4.1203 46 1 8.5095 3.6944 3.5536 47 1 10.8586 5.5987 1.3819 48 1 9.9501 7.1280 1.4464 49 1 13.4687 8.1665 1.7727 50 1 4.6100 2.8146 -1.1657 51 1 3.2156 3.5118 -0.2948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174299634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -29.755003 kcal Electronic energy + Delta-G solvation = -22643.401926 eV Core-core repulsion = 19576.110632 eV Total energy + Delta-G solvation = -3067.291294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.55762 -37.59833 -35.44615 -33.81562 -32.24831 -30.74900 -29.51741 -27.04785 -26.38030 -26.27234 -25.04067 -23.64345 -22.35856 -21.83236 -20.72452 -20.30165 -17.84350 -16.44439 -16.24888 -15.90052 -15.63513 -14.96884 -14.69830 -14.26821 -13.92147 -13.77790 -13.64897 -13.56984 -12.99056 -12.80964 -12.62692 -12.46799 -12.27505 -12.10651 -11.98949 -11.68775 -11.55137 -11.28861 -11.04027 -10.99607 -10.97388 -10.88116 -10.78005 -10.74034 -10.62963 -10.47097 -10.23300 -10.07791 -9.66621 -9.00192 -8.80413 -8.55343 -8.30873 -8.06180 -5.95107 -3.95101 3.33081 3.40890 3.44438 3.70183 4.25709 4.48365 4.50638 4.54078 4.68114 4.72482 4.96083 5.06774 5.11561 5.17173 5.31790 5.32433 5.36799 5.39025 5.40720 5.46934 5.65993 5.67362 5.69114 5.73831 5.76900 5.80701 5.84448 5.88811 5.95773 5.98664 6.02954 6.20733 6.28630 6.36314 6.53017 6.67824 6.73086 6.80897 6.84436 6.84931 7.22641 7.25037 7.27987 7.43135 7.69878 7.73677 7.87663 8.05465 8.50005 9.10584 9.67640 11.16584 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.054058 B = 0.002399 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.836932 B =11668.072346 C =11821.644425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.050 3.950 4 N -0.532 5.532 5 C 0.043 3.957 6 C -0.128 4.128 7 C -0.105 4.105 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.687 5.687 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.033 3.967 16 C -0.506 4.506 17 H 0.060 0.940 18 C 0.053 3.947 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.285 1.285 24 C 0.047 3.953 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.032 0.968 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.258 0.742 50 H 0.078 0.922 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.151 -13.874 -3.273 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.078 4.078 4 N -0.256 5.256 5 C -0.084 4.084 6 C -0.166 4.166 7 C -0.125 4.125 8 H 0.102 0.898 9 C -0.061 4.061 10 N -0.319 5.319 11 C -0.059 4.059 12 C -0.059 4.059 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.537 5.537 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.081 4.081 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.156 0.844 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.097 0.903 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.232 -13.542 -3.668 25.449 hybrid contribution 0.952 0.220 0.963 1.372 sum -20.280 -13.322 -2.704 24.415 Atomic orbital electron populations 1.21744 0.95727 1.01736 1.01749 1.21494 0.95240 0.96426 1.02631 1.22366 0.87616 0.97191 1.00666 1.63591 1.07429 1.22454 1.32079 1.23045 0.95693 0.99912 0.89761 1.22807 0.97466 0.94779 1.01538 1.22405 0.96566 0.96029 0.97506 0.89826 1.21880 0.93273 0.98082 0.92835 1.60574 1.22758 1.29449 1.19091 1.22102 0.89083 0.97038 0.97641 1.20627 0.96383 0.95595 0.93284 1.21598 0.97936 0.98183 0.99595 1.21766 0.98959 0.96953 1.00937 1.19130 0.90265 0.94532 0.96507 1.21281 1.05959 1.34108 0.93056 0.92236 1.25029 0.97752 0.96378 0.95556 1.69976 1.22157 1.40380 1.21225 0.86603 0.80040 0.78245 0.83510 1.19782 1.21208 1.21175 1.22836 0.97683 0.88696 0.98873 0.92689 0.92563 0.92893 0.91215 0.92116 0.94812 0.90986 0.93642 0.90457 0.90766 0.90556 0.95355 0.91231 0.84369 0.95930 0.91637 0.93946 0.92717 0.94206 0.94113 0.91720 0.94866 0.96923 0.96692 0.93238 0.90345 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.15 0.37 -0.53 16 2 C -0.12 -0.86 5.98 -26.74 -0.16 -1.02 16 3 C 0.05 0.41 4.56 -3.83 -0.02 0.39 16 4 N -0.53 -5.09 5.16 -231.26 -1.19 -6.28 16 5 C 0.04 0.39 5.78 -2.30 -0.01 0.38 16 6 C -0.13 -1.24 5.92 -24.60 -0.15 -1.38 16 7 C -0.11 -1.09 3.16 -88.80 -0.28 -1.37 16 8 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 9 C 0.07 0.84 5.03 -3.82 -0.02 0.82 16 10 N -0.69 -9.90 5.71 -113.77 -0.65 -10.55 16 11 C 0.07 1.22 4.65 -3.82 -0.02 1.20 16 12 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 13 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 14 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 15 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 16 C -0.51 -13.91 7.65 -34.44 -0.26 -14.18 16 17 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.05 0.46 6.46 -2.84 -0.02 0.44 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.44 7.49 -51.93 -0.39 0.06 16 30 H 0.03 0.28 7.85 -51.93 -0.41 -0.13 16 31 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 32 H 0.05 0.40 7.62 -51.93 -0.40 0.00 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.35 8.00 -51.93 -0.42 -0.06 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.34 4.68 6.20 -39.29 -0.24 4.44 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 42 H 0.05 1.14 6.61 -51.93 -0.34 0.80 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 46 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.08 0.78 7.82 -51.93 -0.41 0.38 16 51 H 0.05 0.50 7.55 -51.93 -0.39 0.10 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -28.93 384.07 -10.87 -39.80 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -10.25 Total: -0.75 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -0.28 Total: -18.44 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -1.11 Total: -43.08 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.93 -10.87 -39.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174299634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.048 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds