Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 N 1.46900 * 109.47463 * 179.97438 * 3 2 1 5 5 C 1.47843 * 110.99888 * 290.84466 * 4 3 2 6 6 C 1.54904 * 104.79405 * 213.63369 * 5 4 3 7 7 C 1.55139 * 101.65629 * 37.06983 * 6 5 4 8 8 H 1.08996 * 110.85104 * 82.79825 * 7 6 5 9 9 C 1.52999 * 110.70659 * 205.96492 * 7 6 5 10 10 N 1.46907 * 109.46968 * 288.59453 * 9 7 6 11 11 C 1.46900 * 110.99677 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46854 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46833 * 299.99552 * 12 11 10 14 14 C 1.52997 * 109.47315 * 59.99651 * 12 11 10 15 15 C 1.53003 * 109.47118 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47162 * 179.97438 * 15 12 11 17 17 H 1.07998 * 119.99968 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99923 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00160 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99652 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47450 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46870 * 119.99989 * 20 18 16 23 23 H 1.48503 * 109.46864 * 239.99459 * 20 18 16 24 24 C 1.47446 * 111.00255 * 170.00015 * 4 3 2 25 25 H 1.09005 * 109.47542 * 60.00035 * 1 2 3 26 26 H 1.08999 * 109.47487 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47261 * 300.00069 * 1 2 3 28 28 H 1.08998 * 109.47261 * 239.99931 * 2 1 3 29 29 H 1.08996 * 109.47422 * 120.00189 * 2 1 3 30 30 H 1.08998 * 109.47085 * 59.99823 * 3 2 1 31 31 H 1.09000 * 109.47513 * 299.99767 * 3 2 1 32 32 H 1.08998 * 110.37465 * 332.46027 * 5 4 3 33 33 H 1.09003 * 110.37404 * 94.80784 * 5 4 3 34 34 H 1.09005 * 110.99350 * 278.97811 * 6 5 4 35 35 H 1.08998 * 110.99317 * 155.16278 * 6 5 4 36 36 H 1.08994 * 109.47457 * 48.60117 * 9 7 6 37 37 H 1.09003 * 109.47043 * 168.59968 * 9 7 6 38 38 H 1.00901 * 110.99376 * 56.05141 * 10 9 7 39 39 H 1.09003 * 109.47319 * 299.99904 * 11 10 9 40 40 H 1.08999 * 109.47059 * 60.00308 * 11 10 9 41 41 H 1.09001 * 109.46712 * 60.00388 * 13 12 11 42 42 H 1.08996 * 109.47366 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47409 * 300.00513 * 13 12 11 44 44 H 1.09001 * 109.46858 * 60.00864 * 14 12 11 45 45 H 1.08998 * 109.46739 * 179.97438 * 14 12 11 46 46 H 1.08993 * 109.47201 * 300.00186 * 14 12 11 47 47 H 1.09005 * 109.46722 * 299.99687 * 15 12 11 48 48 H 1.08999 * 109.47271 * 59.99397 * 15 12 11 49 49 H 0.96999 * 120.00002 * 180.02562 * 19 18 16 50 50 H 1.08997 * 109.88511 * 242.66682 * 24 4 3 51 51 H 1.08994 * 109.88544 * 3.85008 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0382 0.9516 1.2908 6 6 5.3440 1.7546 1.5139 7 6 4.9554 3.1474 0.9519 8 1 4.4145 3.7296 1.6978 9 6 6.1967 3.9035 0.4740 10 7 6.9899 4.3263 1.6360 11 6 8.1922 5.0577 1.2145 12 6 8.9910 5.4801 2.4491 13 6 8.1271 6.3842 3.3308 14 6 9.4015 4.2370 3.2410 15 6 10.2430 6.2424 2.0103 16 6 11.0295 6.6591 3.2263 17 1 10.6720 6.4059 4.2135 18 6 12.2055 7.3635 3.0787 19 7 12.6411 7.6713 1.8766 20 14 13.1800 7.8805 4.5861 21 1 12.4808 7.4160 5.8110 22 1 14.5356 7.2767 4.5303 23 1 13.2983 9.3606 4.6154 24 6 4.0374 2.7981 -0.2384 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.3280 1.1516 2.0931 33 1 4.2542 -0.1151 1.2312 34 1 6.1697 1.3221 0.9489 35 1 5.5883 1.8158 2.5744 36 1 6.7983 3.2511 -0.1587 37 1 5.8907 4.7809 -0.0958 38 1 7.2313 3.5365 2.2157 39 1 8.8079 4.4135 0.5867 40 1 7.8997 5.9431 0.6501 41 1 7.2350 5.8415 3.6434 42 1 8.6962 6.6856 4.2101 43 1 7.8346 7.2698 2.7666 44 1 10.0171 3.5931 2.6129 45 1 9.9710 4.5381 4.1203 46 1 8.5095 3.6944 3.5536 47 1 10.8586 5.5987 1.3819 48 1 9.9501 7.1280 1.4464 49 1 13.4687 8.1665 1.7727 50 1 4.6100 2.8146 -1.1657 51 1 3.2156 3.5118 -0.2948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174299634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -46.553621 kcal Electronic energy + Delta-G solvation = -22644.130369 eV Core-core repulsion = 19576.110632 eV Total energy + Delta-G solvation = -3068.019737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35692 -39.07187 -36.47021 -34.99963 -34.04712 -31.65480 -30.35558 -28.96102 -27.89345 -27.39202 -26.19437 -24.97382 -23.72077 -22.69986 -21.41073 -21.16307 -19.47909 -18.33526 -17.33158 -16.86108 -16.57235 -16.30175 -15.92171 -15.50342 -15.35942 -14.93339 -14.52477 -14.36752 -14.26554 -14.06518 -13.94162 -13.76569 -13.39612 -13.29835 -13.05949 -12.80049 -12.67910 -12.66227 -12.42802 -12.26361 -12.21144 -12.17116 -12.03251 -11.84849 -11.67824 -11.66604 -11.60454 -11.41852 -11.34362 -10.85644 -10.70213 -10.51371 -9.29253 -9.26874 -8.14132 -6.21151 1.40157 1.41093 1.53425 2.43622 3.00288 3.19692 3.23376 3.68453 3.73160 4.02396 4.07568 4.14609 4.21125 4.25529 4.37917 4.38595 4.45257 4.49125 4.53198 4.57702 4.67584 4.74283 4.78051 4.79950 4.85159 4.91241 4.93276 4.97237 4.99207 5.08390 5.11365 5.14403 5.20344 5.21724 5.22109 5.30996 5.39051 5.42658 5.52017 5.54119 5.58879 5.65848 5.87577 5.92960 6.00796 6.11091 6.16892 6.37169 6.55248 6.94314 7.46155 8.98386 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.054058 B = 0.002399 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.836932 B =11668.072346 C =11821.644425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.050 3.950 4 N -0.542 5.542 5 C 0.046 3.954 6 C -0.126 4.126 7 C -0.097 4.097 8 H 0.080 0.920 9 C 0.072 3.928 10 N -0.681 5.681 11 C 0.082 3.918 12 C -0.056 4.056 13 C -0.107 4.107 14 C -0.122 4.122 15 C 0.039 3.961 16 C -0.513 4.513 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.958 3.042 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.050 3.950 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.067 0.933 38 H 0.343 0.657 39 H 0.015 0.985 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.047 0.953 46 H 0.068 0.932 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.259 0.741 50 H 0.073 0.927 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.636 -14.960 -1.944 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.078 4.078 4 N -0.267 5.267 5 C -0.081 4.081 6 C -0.164 4.164 7 C -0.116 4.116 8 H 0.099 0.901 9 C -0.058 4.058 10 N -0.314 5.314 11 C -0.047 4.047 12 C -0.056 4.056 13 C -0.164 4.164 14 C -0.179 4.179 15 C 0.002 3.998 16 C -0.551 4.551 17 H 0.085 0.915 18 C -0.204 4.204 19 N -0.580 5.580 20 Si 0.783 3.217 21 H -0.184 1.184 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.079 4.079 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.068 0.932 50 H 0.092 0.908 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.739 -14.645 -2.329 27.147 hybrid contribution 1.378 0.540 0.490 1.559 sum -21.361 -14.105 -1.840 25.664 Atomic orbital electron populations 1.21722 0.94732 1.02244 1.01985 1.21456 0.96069 0.95656 1.02222 1.22402 0.86805 0.97850 1.00749 1.63606 1.08327 1.22231 1.32493 1.23032 0.95370 1.00028 0.89667 1.22790 0.97617 0.94254 1.01712 1.22285 0.95592 0.96074 0.97691 0.90133 1.21896 0.93632 0.98213 0.92013 1.60508 1.21065 1.29765 1.20021 1.21805 0.89893 0.97010 0.96006 1.20498 0.94481 0.95877 0.94746 1.21503 0.98444 0.97957 0.98500 1.21683 1.00210 0.96288 0.99767 1.19016 0.92265 0.93352 0.95205 1.21655 1.06077 1.33459 0.93895 0.91523 1.25952 0.99161 0.96652 0.98591 1.70117 1.22791 1.41460 1.23583 0.85498 0.78413 0.77736 0.80020 1.18395 1.20826 1.20896 1.22787 0.97694 0.89082 0.98290 0.92425 0.91948 0.92684 0.91861 0.92247 0.94784 0.90805 0.93189 0.90046 0.91350 0.89981 0.95458 0.91464 0.83684 0.96630 0.92623 0.91352 0.94252 0.95156 0.94499 0.93398 0.91373 0.99831 0.99821 0.93190 0.90831 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.12 -1.49 5.98 30.59 0.18 -1.30 16 3 C 0.05 0.73 4.56 86.30 0.39 1.13 16 4 N -0.54 -9.48 5.16 -885.57 -4.57 -14.06 16 5 C 0.05 0.75 5.78 86.77 0.50 1.25 16 6 C -0.13 -2.17 5.92 31.98 0.19 -1.98 16 7 C -0.10 -1.82 3.16 -9.61 -0.03 -1.85 16 8 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 9 C 0.07 1.65 5.03 86.30 0.43 2.08 16 10 N -0.68 -18.40 5.71 -513.87 -2.94 -21.34 16 11 C 0.08 2.83 4.65 86.30 0.40 3.23 16 12 C -0.06 -2.22 0.60 -52.18 -0.03 -2.25 16 13 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 14 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 15 C 0.04 2.05 4.04 29.85 0.12 2.17 16 16 C -0.51 -28.55 7.65 25.60 0.20 -28.36 16 17 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 18 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 19 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 20 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.05 0.88 6.46 86.64 0.56 1.44 16 25 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.77 7.49 -2.39 -0.02 0.75 16 30 H 0.03 0.50 7.85 -2.39 -0.02 0.48 16 31 H 0.07 1.05 8.03 -2.39 -0.02 1.03 16 32 H 0.05 0.76 7.62 -2.39 -0.02 0.75 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.28 7.94 -2.38 -0.02 1.26 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.03 0.65 8.00 -2.39 -0.02 0.63 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.34 8.62 6.20 -89.69 -0.56 8.06 16 39 H 0.02 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 42 H 0.04 1.60 6.61 -2.39 -0.02 1.58 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 46 H 0.07 1.96 6.57 -2.39 -0.02 1.95 16 47 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 48 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 49 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 50 H 0.07 1.38 7.82 -2.39 -0.02 1.36 16 51 H 0.06 1.00 7.55 -2.39 -0.02 0.98 16 Total: -1.00 -62.34 384.07 0.34 -62.00 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.29 Total: 16.63 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 5.24 Total: -32.49 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -7.22 Total: -92.88 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.34 0.34 -62.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174299634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.447 kcal (2) G-P(sol) polarization free energy of solvation -62.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds