Wall clock time and date at job start Tue Mar 31 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47036 * 2 1 4 4 C 1.46848 * 111.00045 * 68.00786 * 3 2 1 5 5 C 1.53034 * 109.51771 * 185.84197 * 4 3 2 6 6 C 1.53113 * 109.27906 * 300.80367 * 5 4 3 7 7 C 1.53124 * 109.15065 * 57.67077 * 6 5 4 8 8 C 1.46849 * 110.99891 * 192.21527 * 3 2 1 9 9 H 1.09000 * 109.46079 * 294.17689 * 8 3 2 10 10 C 1.52997 * 109.46199 * 54.16054 * 8 3 2 11 11 N 1.46898 * 109.47219 * 53.97899 * 10 8 3 12 12 C 1.46898 * 110.99828 * 185.38474 * 11 10 8 13 13 C 1.53002 * 109.46966 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46982 * 299.99874 * 13 12 11 15 15 C 1.52996 * 109.47348 * 59.99740 * 13 12 11 16 16 C 1.53003 * 109.46980 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.47174 * 179.97438 * 16 13 12 18 18 H 1.08005 * 119.99627 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00394 * 179.97438 * 17 16 13 20 20 N 1.31515 * 119.99571 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00193 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47434 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47161 * 120.00307 * 21 19 17 24 24 H 1.48503 * 109.47109 * 239.99793 * 21 19 17 25 25 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47283 * 299.99747 * 1 2 3 27 27 H 1.08998 * 109.47109 * 59.99719 * 1 2 3 28 28 H 1.08999 * 109.46824 * 240.00239 * 2 1 3 29 29 H 1.08998 * 109.47109 * 120.00280 * 2 1 3 30 30 H 1.09003 * 109.46299 * 305.85884 * 4 3 2 31 31 H 1.09002 * 109.46116 * 65.83199 * 4 3 2 32 32 H 1.08994 * 109.50189 * 60.75690 * 5 4 3 33 33 H 1.09005 * 109.50622 * 180.87675 * 5 4 3 34 34 H 1.09003 * 109.53601 * 297.76875 * 6 5 4 35 35 H 1.09004 * 109.57598 * 177.60106 * 6 5 4 36 36 H 1.09000 * 109.50330 * 182.39706 * 7 6 5 37 37 H 1.08995 * 109.53608 * 62.30322 * 7 6 5 38 38 H 1.09001 * 109.46990 * 173.98312 * 10 8 3 39 39 H 1.09001 * 109.47086 * 293.97579 * 10 8 3 40 40 H 1.00898 * 111.00208 * 61.42875 * 11 10 8 41 41 H 1.09004 * 109.47240 * 299.99880 * 12 11 10 42 42 H 1.08997 * 109.47609 * 59.99853 * 12 11 10 43 43 H 1.08994 * 109.47473 * 60.00187 * 14 13 12 44 44 H 1.09006 * 109.47180 * 180.02562 * 14 13 12 45 45 H 1.09008 * 109.47267 * 299.99759 * 14 13 12 46 46 H 1.09004 * 109.46895 * 60.00170 * 15 13 12 47 47 H 1.09001 * 109.47237 * 179.97438 * 15 13 12 48 48 H 1.08992 * 109.47271 * 300.00310 * 15 13 12 49 49 H 1.08994 * 109.47298 * 299.99738 * 16 13 12 50 50 H 1.08998 * 109.46892 * 60.00101 * 16 13 12 51 51 H 0.97001 * 120.00232 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7110 2.0522 1.2712 5 6 2.1033 3.5287 1.1820 6 6 3.6001 3.6367 0.8779 7 6 3.9028 2.8926 -0.4257 8 6 3.4583 1.4344 -0.2901 9 1 4.0092 0.9609 0.5226 10 6 3.7405 0.6921 -1.5978 11 7 2.8895 1.2372 -2.6638 12 6 3.0400 0.4648 -3.9043 13 6 2.1409 1.0616 -4.9889 14 6 0.6827 1.0085 -4.5287 15 6 2.5432 2.5159 -5.2416 16 6 2.2981 0.2575 -6.2810 17 6 1.4120 0.8449 -7.3492 18 1 0.7985 1.7059 -7.1285 19 6 1.3854 0.2839 -8.6084 20 7 2.1329 -0.7643 -8.8771 21 14 0.2876 1.0124 -9.9325 22 1 -0.4476 2.1783 -9.3799 23 1 1.1212 1.4511 -11.0805 24 1 -0.6839 -0.0134 -10.3897 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.6430 1.9717 1.4737 31 1 2.2702 1.5759 2.0765 32 1 1.5345 4.0089 0.3858 33 1 1.8886 4.0204 2.1309 34 1 4.1706 3.1908 1.6927 35 1 3.8763 4.6857 0.7712 36 1 4.9737 2.9295 -0.6255 37 1 3.3629 3.3627 -1.2475 38 1 4.7887 0.8191 -1.8687 39 1 3.5250 -0.3684 -1.4673 40 1 3.0869 2.2143 -2.8200 41 1 4.0788 0.5030 -4.2324 42 1 2.7538 -0.5714 -3.7241 43 1 0.5710 1.5815 -3.6083 44 1 0.0421 1.4332 -5.3016 45 1 0.3960 -0.0277 -4.3486 46 1 3.5820 2.5538 -5.5695 47 1 1.9029 2.9409 -6.0146 48 1 2.4316 3.0890 -4.3213 49 1 3.3369 0.2958 -6.6087 50 1 2.0117 -0.7787 -6.1012 51 1 2.1140 -1.1593 -9.7628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174377171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:11 Heat of formation + Delta-G solvation = -21.522247 kcal Electronic energy + Delta-G solvation = -24009.070052 eV Core-core repulsion = 20942.135757 eV Total energy + Delta-G solvation = -3066.934295 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.59185 -37.35864 -34.43577 -34.28736 -32.30426 -30.66299 -29.67961 -27.03972 -26.23883 -26.12088 -24.49525 -24.36515 -22.23035 -21.62611 -20.99563 -19.37081 -17.80278 -16.30320 -16.14253 -15.59228 -15.02422 -14.75446 -14.61186 -14.35235 -14.21733 -13.67639 -13.51348 -13.17925 -13.09429 -12.80205 -12.32036 -12.31233 -11.96830 -11.83684 -11.73990 -11.64609 -11.53745 -11.16205 -11.04490 -10.92201 -10.79470 -10.76100 -10.69401 -10.42054 -10.29245 -10.16790 -10.09721 -9.99189 -9.59216 -8.93049 -8.74735 -8.27335 -8.13667 -7.83242 -5.91840 -3.91351 3.35409 3.43199 3.47110 3.86211 4.50732 4.62423 4.67367 4.73807 4.79552 5.03628 5.19771 5.24344 5.30302 5.39307 5.44204 5.49057 5.54296 5.57659 5.64717 5.68857 5.77175 5.81963 5.83585 5.85509 5.91096 5.97655 6.06000 6.08156 6.11003 6.21931 6.29248 6.35239 6.41017 6.44767 6.61529 6.79959 6.90324 6.92989 7.19716 7.24873 7.30234 7.36977 7.37837 7.57137 7.76373 7.86549 7.94248 8.09392 8.54567 9.14565 9.71273 11.19972 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.003624 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.917967 B = 7725.279448 C = 7941.242345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.508 5.508 4 C 0.053 3.947 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.114 4.114 8 C 0.092 3.908 9 H 0.034 0.966 10 C 0.061 3.939 11 N -0.664 5.664 12 C 0.070 3.930 13 C -0.056 4.056 14 C -0.113 4.113 15 C -0.128 4.128 16 C 0.033 3.967 17 C -0.503 4.503 18 H 0.059 0.941 19 C 0.053 3.947 20 N -0.899 5.899 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.338 0.662 41 H 0.017 0.983 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.011 0.989 50 H 0.014 0.986 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 5.576 21.370 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.233 5.233 4 C -0.075 4.075 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.017 4.017 9 H 0.052 0.948 10 C -0.070 4.070 11 N -0.297 5.297 12 C -0.059 4.059 13 C -0.056 4.056 14 C -0.171 4.171 15 C -0.185 4.185 16 C -0.004 4.004 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.035 0.965 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.029 0.971 50 H 0.032 0.968 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.447 5.363 21.065 21.785 hybrid contribution 0.848 0.029 -0.504 0.987 sum 2.295 5.391 20.561 21.380 Atomic orbital electron populations 1.21744 0.95112 1.01046 1.02273 1.22065 0.96036 0.88809 1.00371 1.61776 1.14131 1.16213 1.31191 1.22131 1.00710 0.94535 0.90136 1.21564 0.96244 0.96031 1.01518 1.21552 0.96425 1.00175 0.97497 1.21638 1.00275 0.94890 0.98427 1.21615 0.88329 0.95840 0.95933 0.94770 1.22024 0.94376 0.98902 0.91652 1.60444 1.56130 1.06605 1.06509 1.22102 0.97277 0.97470 0.89076 1.20583 0.94548 0.95318 0.95161 1.21568 0.95727 1.00269 0.99508 1.21756 1.00527 0.96535 0.99704 1.19128 0.96704 0.94662 0.89935 1.21297 1.24036 1.13527 0.95327 0.92247 1.25016 0.95867 0.95150 0.98626 1.69980 1.40203 1.22423 1.21280 0.86622 0.80653 0.79153 0.82102 1.19757 1.21247 1.21199 0.92896 0.93544 0.91185 0.89541 0.96450 0.90731 0.95927 0.90856 0.92144 0.92752 0.92021 0.92068 0.90463 0.95539 0.91299 0.84198 0.96449 0.91974 0.93401 0.93070 0.94456 0.94335 0.91889 0.94720 0.97077 0.96802 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 37.16 0.37 -1.21 16 2 C 0.05 0.63 5.43 -3.83 -0.02 0.60 16 3 N -0.51 -5.78 4.18 -226.69 -0.95 -6.73 16 4 C 0.05 0.52 5.30 -3.83 -0.02 0.50 16 5 C -0.12 -1.05 6.09 -26.66 -0.16 -1.21 16 6 C -0.12 -1.05 6.00 -26.61 -0.16 -1.21 16 7 C -0.11 -1.15 5.17 -26.65 -0.14 -1.28 16 8 C 0.09 1.00 2.21 -67.72 -0.15 0.85 16 9 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 10 C 0.06 0.75 4.62 -3.83 -0.02 0.73 16 11 N -0.66 -9.52 5.35 -113.78 -0.61 -10.13 16 12 C 0.07 1.21 4.64 -3.82 -0.02 1.19 16 13 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 14 C -0.11 -2.23 8.06 37.16 0.30 -1.93 16 15 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 16 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 17 C -0.50 -13.93 7.65 -34.44 -0.26 -14.19 16 18 H 0.06 1.61 5.68 -52.48 -0.30 1.31 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.46 6.50 -51.93 -0.34 0.12 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.11 5.67 -51.93 -0.29 0.81 16 29 H 0.02 0.19 8.10 -51.93 -0.42 -0.23 16 30 H 0.07 0.72 6.31 -51.93 -0.33 0.39 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.87 6.80 -51.93 -0.35 0.52 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 40 H 0.34 4.83 5.25 -39.29 -0.21 4.62 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.87 7.60 -51.93 -0.39 0.47 16 44 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 45 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 48 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 49 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -28.76 373.46 -10.40 -39.16 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -9.89 Total: 0.01 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -0.29 Total: -18.32 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.82 Total: -43.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.76 -10.40 -39.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174377171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.633 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds