Wall clock time and date at job start Tue Mar 31 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.46854 * 2 1 4 4 C 1.46849 * 110.99973 * 290.51671 * 3 2 1 5 5 C 1.53038 * 109.52533 * 174.16369 * 4 3 2 6 6 C 1.53119 * 109.27511 * 59.17772 * 5 4 3 7 7 C 1.53124 * 109.16450 * 302.34764 * 6 5 4 8 8 C 1.46844 * 110.99755 * 166.30931 * 3 2 1 9 9 H 1.09000 * 109.46316 * 65.83369 * 8 3 2 10 10 C 1.52998 * 109.46523 * 305.85422 * 8 3 2 11 11 N 1.46897 * 109.46959 * 305.83751 * 10 8 3 12 12 C 1.46905 * 111.00280 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47180 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.47123 * 60.00264 * 13 12 11 15 15 C 1.52998 * 109.47697 * 300.00117 * 13 12 11 16 16 C 1.53000 * 109.47336 * 179.97438 * 13 12 11 17 17 C 1.50698 * 109.47803 * 180.02562 * 16 13 12 18 18 H 1.08002 * 119.99673 * 359.97438 * 17 16 13 19 19 C 1.37876 * 120.00543 * 180.02562 * 17 16 13 20 20 N 1.31523 * 119.99663 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47552 * 59.99361 * 21 19 17 23 23 H 1.48505 * 109.46807 * 299.99420 * 21 19 17 24 24 H 1.48496 * 109.47217 * 179.97438 * 21 19 17 25 25 H 1.08995 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47140 * 299.99900 * 1 2 3 27 27 H 1.09001 * 109.47103 * 60.00390 * 1 2 3 28 28 H 1.08994 * 109.47237 * 239.99803 * 2 1 3 29 29 H 1.09001 * 109.47103 * 119.99610 * 2 1 3 30 30 H 1.09002 * 109.46274 * 294.18048 * 4 3 2 31 31 H 1.08998 * 109.46191 * 54.16007 * 4 3 2 32 32 H 1.08990 * 109.50579 * 179.11881 * 5 4 3 33 33 H 1.09002 * 109.50117 * 299.20326 * 5 4 3 34 34 H 1.09004 * 109.52566 * 62.25797 * 6 5 4 35 35 H 1.09003 * 109.52022 * 182.38075 * 6 5 4 36 36 H 1.09003 * 109.50056 * 297.71451 * 7 6 5 37 37 H 1.08994 * 109.50107 * 177.59431 * 7 6 5 38 38 H 1.08998 * 109.47614 * 185.83807 * 10 8 3 39 39 H 1.09001 * 109.46999 * 65.83783 * 10 8 3 40 40 H 1.00904 * 111.00011 * 56.04695 * 11 10 8 41 41 H 1.09000 * 109.46974 * 60.00065 * 12 11 10 42 42 H 1.08997 * 109.46791 * 300.00422 * 12 11 10 43 43 H 1.09001 * 109.46625 * 179.97438 * 14 13 12 44 44 H 1.09003 * 109.47003 * 299.99458 * 14 13 12 45 45 H 1.08997 * 109.47041 * 59.99923 * 14 13 12 46 46 H 1.09000 * 109.46889 * 300.00171 * 15 13 12 47 47 H 1.08996 * 109.46938 * 59.99425 * 15 13 12 48 48 H 1.08994 * 109.47829 * 180.02562 * 15 13 12 49 49 H 1.09000 * 109.46820 * 60.00092 * 16 13 12 50 50 H 1.09006 * 109.47346 * 300.00480 * 16 13 12 51 51 H 0.96992 * 119.99577 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7420 2.0413 -1.2840 5 6 2.1322 3.5186 -1.1982 6 6 3.6211 3.6293 -0.8585 7 6 3.8921 2.8964 0.4583 8 6 3.4508 1.4372 0.3245 9 1 4.0212 0.9570 -0.4706 10 6 3.7013 0.7058 1.6448 11 7 2.8278 1.2626 2.6863 12 6 3.0407 0.5826 3.9710 13 6 2.1161 1.1890 5.0284 14 6 0.6597 1.0133 4.5935 15 6 2.4259 2.6793 5.1827 16 6 2.3373 0.4804 6.3662 17 6 1.4262 1.0772 7.4077 18 1 0.7565 1.8818 7.1420 19 6 1.4482 0.5968 8.6998 20 7 2.2640 -0.3827 9.0234 21 14 0.3182 1.3362 9.9905 22 1 -1.0950 1.1648 9.5680 23 1 0.6180 2.7829 10.1406 24 1 0.5331 0.6484 11.2890 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.3204 1.5581 -2.0714 31 1 0.6792 1.9592 -1.5115 32 1 1.9406 4.0019 -2.1562 33 1 1.5438 4.0058 -0.4207 34 1 4.2112 3.1767 -1.6555 35 1 3.8940 4.6795 -0.7548 36 1 3.3319 3.3737 1.2624 37 1 4.9578 2.9351 0.6837 38 1 4.7433 0.8325 1.9384 39 1 3.4858 -0.3553 1.5188 40 1 1.8588 1.2155 2.4089 41 1 4.0781 0.7082 4.2810 42 1 2.8204 -0.4792 3.8609 43 1 0.0010 1.4450 5.3472 44 1 0.5017 1.5179 3.6404 45 1 0.4389 -0.0484 4.4837 46 1 3.4635 2.8045 5.4925 47 1 2.2680 3.1838 4.2296 48 1 1.7676 3.1113 5.9364 49 1 3.3749 0.6052 6.6762 50 1 2.1163 -0.5813 6.2560 51 1 2.8504 -0.7668 8.3531 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174377189.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:14 Heat of formation + Delta-G solvation = -27.011972 kcal Electronic energy + Delta-G solvation = -24047.684705 eV Core-core repulsion = 20980.512357 eV Total energy + Delta-G solvation = -3067.172348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73481 -37.45706 -34.62399 -34.30776 -32.46925 -30.69964 -29.85011 -26.68685 -26.32647 -26.14905 -24.68036 -24.14405 -22.26223 -21.84261 -21.03197 -19.50455 -18.10762 -16.37208 -16.20522 -15.97033 -15.19911 -14.72549 -14.61871 -14.32539 -14.06044 -13.64267 -13.58519 -13.35295 -13.31983 -12.95021 -12.53485 -12.31109 -11.94038 -11.87835 -11.81382 -11.65168 -11.55003 -11.21698 -11.15079 -10.99026 -10.87488 -10.78518 -10.70864 -10.49019 -10.35491 -10.29927 -10.06216 -9.88025 -9.69870 -9.18310 -8.41474 -8.31967 -8.22798 -7.93376 -6.24637 -3.91787 3.49031 3.51001 3.69165 3.69382 4.51928 4.63091 4.65511 4.71412 4.78073 4.91259 5.08878 5.19802 5.23378 5.27381 5.36143 5.44976 5.48186 5.50667 5.56453 5.64616 5.66004 5.73134 5.76393 5.82807 5.85989 5.88586 5.96351 5.99261 6.07822 6.13105 6.14837 6.26309 6.35675 6.47812 6.53479 6.68631 6.79338 6.84819 6.99997 7.02104 7.19977 7.23873 7.28139 7.47362 7.50606 7.66201 7.90510 8.36251 8.58503 9.00557 9.78707 11.15342 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.003621 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.735709 B = 7730.650260 C = 7941.994073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 N -0.527 5.527 4 C 0.057 3.943 5 C -0.116 4.116 6 C -0.122 4.122 7 C -0.104 4.104 8 C 0.091 3.909 9 H 0.035 0.965 10 C 0.061 3.939 11 N -0.674 5.674 12 C 0.068 3.932 13 C -0.049 4.049 14 C -0.127 4.127 15 C -0.114 4.114 16 C 0.021 3.979 17 C -0.585 4.585 18 H 0.052 0.948 19 C 0.011 3.989 20 N -0.919 5.919 21 Si 1.065 2.935 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.350 0.650 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.004 0.996 50 H 0.001 0.999 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 4.209 -22.504 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 N -0.253 5.253 4 C -0.071 4.071 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.142 4.142 8 C -0.018 4.018 9 H 0.053 0.947 10 C -0.069 4.069 11 N -0.308 5.308 12 C -0.061 4.061 13 C -0.050 4.050 14 C -0.184 4.184 15 C -0.171 4.171 16 C -0.017 4.017 17 C -0.624 4.624 18 H 0.071 0.929 19 C -0.192 4.192 20 N -0.556 5.556 21 Si 0.894 3.106 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.210 1.210 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.172 0.828 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.022 0.978 50 H 0.020 0.980 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.266 4.880 -20.401 20.978 hybrid contribution 0.557 -1.392 -2.454 2.876 sum 0.822 3.487 -22.855 23.135 Atomic orbital electron populations 1.21789 0.94716 1.01451 1.02581 1.22193 0.96328 0.89238 1.00787 1.61887 1.16191 1.15907 1.31289 1.22087 1.00731 0.94790 0.89464 1.21569 0.96701 0.95619 1.01484 1.21610 0.96123 1.00458 0.97788 1.21524 1.00780 0.93967 0.97923 1.21668 0.87505 0.97049 0.95548 0.94669 1.22032 0.98473 0.95093 0.91293 1.60465 1.11210 1.57407 1.01703 1.22110 1.00116 0.94478 0.89397 1.20446 0.93375 0.96241 0.94918 1.21746 0.97287 0.99861 0.99530 1.21570 1.00310 0.95250 0.99972 1.19248 0.96461 0.94685 0.91297 1.22032 1.23556 1.20947 0.95845 0.92932 1.25775 0.98843 0.95813 0.98745 1.70776 1.22746 1.24267 1.37780 0.83598 0.75397 0.75580 0.76034 1.21593 1.21532 1.20982 0.92496 0.91485 0.92863 0.95328 0.90481 0.95534 0.90717 0.92066 0.90813 0.92955 0.91953 0.89334 0.92028 0.90999 0.95952 0.82811 0.92024 0.96518 0.91773 0.94415 0.94457 0.94455 0.93598 0.92748 0.97757 0.98026 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.92 37.16 0.37 -1.05 16 2 C 0.04 0.44 5.05 -3.82 -0.02 0.42 16 3 N -0.53 -5.65 3.63 -226.69 -0.82 -6.48 16 4 C 0.06 0.53 5.30 -3.83 -0.02 0.51 16 5 C -0.12 -1.03 6.09 -26.65 -0.16 -1.20 16 6 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 7 C -0.10 -1.12 5.28 -26.65 -0.14 -1.26 16 8 C 0.09 1.00 2.21 -67.73 -0.15 0.85 16 9 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 10 C 0.06 0.77 4.68 -3.83 -0.02 0.75 16 11 N -0.67 -9.95 5.18 -113.78 -0.59 -10.54 16 12 C 0.07 1.20 4.65 -3.83 -0.02 1.18 16 13 C -0.05 -1.01 0.60 -154.51 -0.09 -1.10 16 14 C -0.13 -2.46 7.89 37.16 0.29 -2.17 16 15 C -0.11 -2.28 8.07 37.16 0.30 -1.98 16 16 C 0.02 0.52 3.35 -27.88 -0.09 0.43 16 17 C -0.59 -16.42 7.65 -34.44 -0.26 -16.68 16 18 H 0.05 1.45 5.68 -52.49 -0.30 1.15 16 19 C 0.01 0.32 5.46 -17.82 -0.10 0.23 16 20 N -0.92 -28.53 13.65 55.43 0.76 -27.78 16 21 Si 1.06 25.68 29.90 -169.99 -5.08 20.59 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.08 0.89 5.43 -51.93 -0.28 0.61 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.66 6.38 -51.93 -0.33 0.33 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.14 7.76 -51.93 -0.40 0.74 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.28 6.39 -51.93 -0.33 -0.05 16 40 H 0.35 5.26 5.33 -39.29 -0.21 5.05 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 1.36 6.62 -51.93 -0.34 1.01 16 44 H 0.04 0.64 6.57 -51.93 -0.34 0.30 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.83 7.60 -51.93 -0.39 0.44 16 48 H 0.05 1.18 6.62 -51.93 -0.34 0.83 16 49 H 0.00 0.11 8.01 -51.93 -0.42 -0.30 16 50 H 0.00 0.04 8.01 -51.93 -0.42 -0.37 16 51 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -29.38 372.13 -10.28 -39.66 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -9.88 Total: 1.27 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -0.27 Total: -22.34 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.66 Total: -44.79 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.38 -10.28 -39.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174377189.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.649 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds