Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99855 * 2 1 4 4 C 1.46901 * 110.99889 * 123.95315 * 2 1 3 5 5 H 1.09004 * 109.47367 * 300.00034 * 4 2 1 6 6 C 1.52999 * 109.47070 * 60.00274 * 4 2 1 7 7 C 1.53006 * 109.47116 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46736 * 299.99782 * 7 6 4 9 9 C 1.52999 * 109.47140 * 60.00233 * 8 7 6 10 10 H 1.09004 * 109.47221 * 59.99972 * 9 8 7 11 11 N 1.46905 * 109.47094 * 179.97438 * 9 8 7 12 12 C 1.46901 * 110.99870 * 274.99984 * 11 9 8 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46923 * 299.99733 * 13 12 11 15 15 C 1.52999 * 109.46998 * 59.99872 * 13 12 11 16 16 C 1.52996 * 109.46700 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46820 * 179.97438 * 16 13 12 18 18 H 1.08000 * 120.00070 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00019 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00228 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00068 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46685 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46910 * 120.00333 * 21 19 17 24 24 H 1.48502 * 109.47120 * 240.00671 * 21 19 17 25 25 C 1.52999 * 109.47150 * 179.97438 * 4 2 1 26 26 H 1.09004 * 109.47418 * 296.04268 * 1 2 3 27 27 H 1.09000 * 109.47430 * 56.04878 * 1 2 3 28 28 H 1.09003 * 109.47343 * 176.04613 * 1 2 3 29 29 H 1.09004 * 109.46742 * 183.95349 * 3 2 1 30 30 H 1.08994 * 109.47147 * 303.95071 * 3 2 1 31 31 H 1.08996 * 109.47042 * 63.95441 * 3 2 1 32 32 H 1.08997 * 109.47624 * 60.00201 * 6 4 2 33 33 H 1.08999 * 109.47123 * 299.99636 * 6 4 2 34 34 H 1.08997 * 109.47183 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47095 * 59.99269 * 7 6 4 36 36 H 1.08997 * 109.47318 * 299.99487 * 8 7 6 37 37 H 1.09006 * 109.46594 * 179.97438 * 8 7 6 38 38 H 1.00901 * 110.99869 * 151.04696 * 11 9 8 39 39 H 1.09004 * 109.47031 * 299.99620 * 12 11 9 40 40 H 1.08995 * 109.47111 * 59.99900 * 12 11 9 41 41 H 1.09002 * 109.47301 * 60.00027 * 14 13 12 42 42 H 1.09001 * 109.47017 * 180.02562 * 14 13 12 43 43 H 1.09005 * 109.47249 * 300.00302 * 14 13 12 44 44 H 1.09001 * 109.46999 * 60.00126 * 15 13 12 45 45 H 1.09001 * 109.46478 * 179.97438 * 15 13 12 46 46 H 1.08993 * 109.47197 * 299.99817 * 15 13 12 47 47 H 1.08993 * 109.47740 * 299.99810 * 16 13 12 48 48 H 1.09005 * 109.47573 * 59.99976 * 16 13 12 49 49 H 0.97002 * 120.00555 * 179.97438 * 20 19 17 50 50 H 1.09009 * 109.47236 * 60.00247 * 25 4 2 51 51 H 1.08998 * 109.47496 * 300.00182 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 1.5049 -2.2125 1.0492 7 6 2.0526 -3.0102 2.2344 8 6 3.5821 -2.9874 2.2011 9 6 4.0727 -1.5408 2.2896 10 1 3.7228 -1.0948 3.2206 11 7 5.5412 -1.5190 2.2582 12 6 6.0995 -1.7240 3.6015 13 6 7.6275 -1.6943 3.5286 14 6 8.1154 -2.8067 2.5983 15 6 8.0860 -0.3388 2.9872 16 6 8.2089 -1.9072 4.9277 17 6 9.7139 -1.8786 4.8559 18 1 10.2065 -1.7236 3.9073 19 6 10.4622 -2.0492 6.0014 20 7 9.8625 -2.2375 7.1566 21 14 12.3278 -2.0130 5.9125 22 1 12.7520 -1.7871 4.5074 23 1 12.8428 -0.9136 6.7676 24 1 12.8714 -3.3092 6.3918 25 6 3.5248 -0.7437 1.1034 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.8544 -2.6585 0.1181 33 1 0.4153 -2.2288 1.0733 34 1 1.7028 -4.0405 2.1717 35 1 1.7028 -2.5640 3.1654 36 1 3.9320 -3.4335 1.2702 37 1 3.9723 -3.5553 3.0458 38 1 5.8815 -0.6601 1.8525 39 1 5.7523 -0.9313 4.2642 40 1 5.7725 -2.6895 3.9874 41 1 7.7011 -2.6546 1.6016 42 1 9.2040 -2.7858 2.5468 43 1 7.7887 -3.7724 2.9841 44 1 7.7384 0.4536 3.6500 45 1 9.1746 -0.3175 2.9357 46 1 7.6717 -0.1867 1.9906 47 1 7.8613 -1.1146 5.5902 48 1 7.8823 -2.8728 5.3139 49 1 10.3888 -2.3579 7.9624 50 1 3.8748 0.2868 1.1662 51 1 3.8740 -1.1899 0.1723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175012208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -24.680009 kcal Electronic energy + Delta-G solvation = -23451.875297 eV Core-core repulsion = 20384.804071 eV Total energy + Delta-G solvation = -3067.071226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.66816 -37.59731 -35.97604 -33.52391 -32.11299 -30.21799 -29.03207 -27.56929 -26.76792 -26.29719 -25.02916 -24.18641 -22.45922 -21.99022 -20.44913 -19.83590 -17.81856 -16.40855 -16.20914 -15.35987 -15.21983 -15.03619 -14.62600 -14.54551 -14.10644 -14.02661 -13.64103 -13.35238 -13.08201 -12.72277 -12.59878 -12.51041 -11.99967 -11.97663 -11.78143 -11.71675 -11.60049 -11.45155 -11.21814 -10.97100 -10.88184 -10.74551 -10.58595 -10.47965 -10.35222 -10.31720 -10.12252 -10.01101 -9.64514 -8.97899 -8.78282 -8.59412 -8.30113 -8.02867 -5.94437 -3.94317 3.33584 3.41393 3.45061 3.62875 4.29800 4.50980 4.56397 4.82563 4.85872 5.01802 5.09150 5.11652 5.19531 5.28169 5.33140 5.38483 5.38756 5.41489 5.44286 5.50388 5.59986 5.71183 5.73755 5.80375 5.85394 5.97236 6.01024 6.02421 6.09732 6.15527 6.24587 6.32987 6.38422 6.44385 6.56681 6.70761 6.78625 6.83099 6.84424 6.86786 7.24535 7.29007 7.30430 7.47830 7.72005 7.76489 7.88909 8.06267 8.50964 9.11436 9.68448 11.17298 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.034426 B = 0.003044 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.146797 B = 9195.006331 C = 9551.458569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.543 5.543 3 C 0.020 3.980 4 C 0.088 3.912 5 H 0.038 0.962 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.106 4.106 9 C 0.089 3.911 10 H 0.037 0.963 11 N -0.682 5.682 12 C 0.071 3.929 13 C -0.058 4.058 14 C -0.115 4.115 15 C -0.129 4.129 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.060 0.940 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.285 1.285 25 C -0.113 4.113 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.338 0.662 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.014 0.986 49 H 0.258 0.742 50 H 0.060 0.940 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.571 3.508 -13.294 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.267 5.267 3 C -0.128 4.128 4 C -0.020 4.020 5 H 0.056 0.944 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.145 4.145 9 C -0.021 4.021 10 H 0.055 0.945 11 N -0.314 5.314 12 C -0.057 4.057 13 C -0.059 4.059 14 C -0.172 4.172 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.151 4.151 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.157 0.843 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.316 2.606 -13.726 23.036 hybrid contribution 0.540 1.348 1.419 2.030 sum -17.777 3.954 -12.307 21.980 Atomic orbital electron populations 1.22428 0.87660 1.02359 1.00236 1.62021 1.07611 1.13672 1.43367 1.22448 1.01437 0.88721 1.00229 1.21636 0.95111 0.94228 0.91058 0.94408 1.21621 0.99763 0.94022 0.99464 1.21534 0.96300 0.99939 0.97922 1.21525 0.93758 0.96348 1.02835 1.21461 0.88687 0.95661 0.96307 0.94524 1.60585 1.05231 1.42158 1.23386 1.22139 0.96139 0.99864 0.87583 1.20623 0.91204 0.94937 0.99094 1.21589 1.00693 0.97290 0.97666 1.21764 1.02239 0.96725 0.97861 1.19126 0.95431 0.96716 0.89144 1.21285 0.91538 1.47958 0.93541 0.92236 1.25023 0.98245 0.95747 0.95648 1.69978 1.35066 1.50268 0.98502 0.86614 0.86368 0.77479 0.78016 1.19763 1.21224 1.21158 1.21811 0.93647 0.99862 0.99810 0.95866 0.91561 0.91003 0.90739 0.91548 0.95814 0.90930 0.92233 0.91645 0.92389 0.91182 0.91853 0.84293 0.96115 0.91630 0.93842 0.92784 0.94243 0.94217 0.91755 0.94795 0.97002 0.96720 0.93252 0.92159 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.21 60.06 0.55 0.72 16 2 N -0.54 -5.13 4.89 -243.18 -1.19 -6.32 16 3 C 0.02 0.17 9.11 60.06 0.55 0.72 16 4 C 0.09 0.87 1.94 -67.71 -0.13 0.74 16 5 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 6 C -0.11 -1.02 4.97 -26.73 -0.13 -1.16 16 7 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 8 C -0.11 -1.26 5.42 -26.73 -0.15 -1.41 16 9 C 0.09 1.11 2.50 -67.68 -0.17 0.94 16 10 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 11 N -0.68 -9.88 5.52 -106.69 -0.59 -10.47 16 12 C 0.07 1.25 4.44 -3.82 -0.02 1.23 16 13 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 14 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 15 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 16 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 17 C -0.50 -13.90 7.65 -34.44 -0.26 -14.17 16 18 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C -0.11 -1.22 4.12 -26.71 -0.11 -1.33 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.07 0.52 6.30 -51.93 -0.33 0.20 16 29 H 0.07 0.65 6.24 -51.93 -0.32 0.32 16 30 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.49 6.40 -51.93 -0.33 0.16 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 38 H 0.34 4.73 6.39 -39.29 -0.25 4.48 16 39 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 40 H 0.07 1.19 7.43 -51.93 -0.39 0.81 16 41 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 42 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 46 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.06 0.64 6.33 -51.92 -0.33 0.31 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -29.00 373.63 -10.10 -39.10 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -9.93 Total: -0.16 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 0.26 Total: -18.18 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -1.04 Total: -43.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.00 -10.10 -39.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175012208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.417 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds