Wall clock time and date at job start Tue Mar 31 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00151 * 2 1 4 4 C 1.46909 * 110.99769 * 123.95166 * 2 1 3 5 5 H 1.08995 * 109.46981 * 299.99957 * 4 2 1 6 6 C 1.52996 * 109.47090 * 60.00070 * 4 2 1 7 7 C 1.52992 * 109.47345 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47222 * 299.99950 * 7 6 4 9 9 C 1.53006 * 109.46959 * 59.99888 * 8 7 6 10 10 H 1.09004 * 109.47124 * 180.02562 * 9 8 7 11 11 N 1.46893 * 109.47094 * 59.99933 * 9 8 7 12 12 C 1.46910 * 110.99767 * 85.00168 * 11 9 8 13 13 C 1.53001 * 109.46736 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47423 * 59.99930 * 13 12 11 15 15 C 1.53001 * 109.47283 * 299.99349 * 13 12 11 16 16 C 1.53002 * 109.46852 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.47207 * 179.97438 * 16 13 12 18 18 H 1.07994 * 119.99603 * 359.97438 * 17 16 13 19 19 C 1.37875 * 119.99838 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99776 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99769 * 21 19 17 25 25 C 1.52998 * 109.46862 * 299.99801 * 9 8 7 26 26 H 1.09005 * 109.46749 * 296.04982 * 1 2 3 27 27 H 1.08996 * 109.46687 * 56.04830 * 1 2 3 28 28 H 1.08998 * 109.47178 * 176.04525 * 1 2 3 29 29 H 1.09000 * 109.47352 * 183.95335 * 3 2 1 30 30 H 1.09000 * 109.47394 * 303.95278 * 3 2 1 31 31 H 1.09003 * 109.46974 * 63.95415 * 3 2 1 32 32 H 1.09000 * 109.47032 * 300.00219 * 6 4 2 33 33 H 1.09001 * 109.46993 * 59.99429 * 6 4 2 34 34 H 1.09001 * 109.47444 * 59.99825 * 7 6 4 35 35 H 1.08999 * 109.47444 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47223 * 299.99963 * 8 7 6 37 37 H 1.09001 * 109.47558 * 179.97438 * 8 7 6 38 38 H 1.00901 * 111.00781 * 321.04759 * 11 9 8 39 39 H 1.08999 * 109.47206 * 60.00167 * 12 11 9 40 40 H 1.08998 * 109.47077 * 299.99763 * 12 11 9 41 41 H 1.09000 * 109.47074 * 179.97438 * 14 13 12 42 42 H 1.08995 * 109.47527 * 300.00033 * 14 13 12 43 43 H 1.08998 * 109.47142 * 59.99789 * 14 13 12 44 44 H 1.08993 * 109.47330 * 300.00719 * 15 13 12 45 45 H 1.09008 * 109.46541 * 60.00618 * 15 13 12 46 46 H 1.09004 * 109.47445 * 180.02562 * 15 13 12 47 47 H 1.09005 * 109.47493 * 59.99815 * 16 13 12 48 48 H 1.08998 * 109.47006 * 299.99778 * 16 13 12 49 49 H 0.97001 * 119.99667 * 0.02562 * 20 19 17 50 50 H 1.08999 * 109.47060 * 179.97438 * 25 9 8 51 51 H 1.08993 * 109.47644 * 300.00405 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.6459 -0.3200 2.0688 6 6 1.5049 -2.2125 1.0493 7 6 2.0536 -3.0104 2.2338 8 6 3.5830 -2.9876 2.1994 9 6 4.0736 -1.5411 2.2878 10 1 5.1633 -1.5248 2.2628 11 7 3.6031 -0.9403 3.5429 12 6 4.5167 -1.2514 4.6504 13 6 3.9942 -0.6107 5.9378 14 6 2.6028 -1.1628 6.2540 15 6 3.9117 0.9062 5.7556 16 6 4.9461 -0.9342 7.0912 17 6 4.4318 -0.3026 8.3592 18 1 3.5177 0.2723 8.3438 19 6 5.1288 -0.4580 9.5386 20 7 6.2422 -1.1577 9.5572 21 14 4.4910 0.3243 11.1104 22 1 3.2289 1.0528 10.8241 23 1 5.5029 1.2757 11.6358 24 1 4.2343 -0.7332 12.1209 25 6 3.5249 -0.7432 1.1032 26 1 -0.3633 0.4513 0.9233 27 1 -0.3632 0.5739 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 0.4152 -2.2287 1.0734 33 1 1.8543 -2.6584 0.1181 34 1 1.7045 -2.5646 3.1652 35 1 1.7044 -4.0410 2.1706 36 1 3.9322 -3.4335 1.2680 37 1 3.9740 -3.5557 3.0435 38 1 2.6625 -1.2372 3.7558 39 1 5.5081 -0.8584 4.4250 40 1 4.5752 -2.3320 4.7806 41 1 2.2308 -0.7066 7.1715 42 1 1.9249 -0.9320 5.4323 43 1 2.6616 -2.2434 6.3839 44 1 4.9030 1.2995 5.5303 45 1 3.2338 1.1370 4.9338 46 1 3.5399 1.3627 6.6730 47 1 5.9372 -0.5405 6.8657 48 1 5.0053 -2.0148 7.2212 49 1 6.5732 -1.5642 8.7411 50 1 3.8740 0.2874 1.1664 51 1 3.8740 -1.1890 0.1719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175012225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:32 Heat of formation + Delta-G solvation = -25.228810 kcal Electronic energy + Delta-G solvation = -24058.181104 eV Core-core repulsion = 20991.086081 eV Total energy + Delta-G solvation = -3067.095024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91453 -37.59129 -36.07254 -33.26394 -32.07971 -30.28746 -29.09140 -27.52607 -26.51919 -26.35720 -24.99515 -24.20225 -22.46696 -22.26911 -20.95089 -18.95627 -18.24780 -16.53831 -16.38279 -15.49019 -15.31598 -14.82908 -14.67251 -14.31639 -14.17620 -13.74266 -13.64209 -13.41306 -13.15430 -12.75132 -12.54630 -12.45556 -12.22465 -12.01618 -11.79207 -11.58204 -11.55433 -11.47029 -11.29326 -11.06476 -11.01129 -10.88324 -10.68557 -10.54162 -10.37169 -10.12004 -10.02169 -9.95166 -9.76835 -9.26102 -8.46501 -8.37800 -8.26251 -8.05848 -6.28501 -3.96078 3.46082 3.49973 3.62681 3.76737 4.41470 4.56139 4.59382 4.75672 4.85901 5.03292 5.08197 5.14144 5.25030 5.33221 5.38399 5.45420 5.46178 5.47171 5.50416 5.56223 5.65671 5.68458 5.72002 5.76548 5.79333 5.88428 5.93634 6.00082 6.01816 6.11179 6.17493 6.25618 6.28977 6.31787 6.44465 6.58352 6.71412 6.76563 6.90315 6.95546 7.12095 7.15035 7.20778 7.38941 7.44510 7.59680 7.71353 8.31646 8.55082 8.96717 9.74603 11.11563 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026712 B = 0.003600 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.982197 B = 7775.388573 C = 8097.797166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.545 5.545 3 C 0.022 3.978 4 C 0.085 3.915 5 H 0.050 0.950 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.150 4.150 9 C 0.086 3.914 10 H 0.077 0.923 11 N -0.681 5.681 12 C 0.069 3.931 13 C -0.051 4.051 14 C -0.127 4.127 15 C -0.114 4.114 16 C 0.021 3.979 17 C -0.587 4.587 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.919 5.919 21 Si 1.070 2.930 22 H -0.290 1.290 23 H -0.288 1.288 24 H -0.289 1.289 25 C -0.098 4.098 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.339 0.661 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.005 0.995 48 H 0.002 0.998 49 H 0.268 0.732 50 H 0.070 0.930 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 -0.450 -19.732 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.269 5.269 3 C -0.127 4.127 4 C -0.023 4.023 5 H 0.068 0.932 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.190 4.190 9 C -0.025 4.025 10 H 0.095 0.905 11 N -0.314 5.314 12 C -0.060 4.060 13 C -0.052 4.052 14 C -0.184 4.184 15 C -0.172 4.172 16 C -0.017 4.017 17 C -0.625 4.625 18 H 0.071 0.929 19 C -0.192 4.192 20 N -0.556 5.556 21 Si 0.899 3.101 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.136 4.136 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.160 0.840 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.023 0.977 48 H 0.021 0.979 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.922 0.143 -18.677 20.699 hybrid contribution -0.746 -0.813 -0.689 1.301 sum -9.667 -0.669 -19.366 21.656 Atomic orbital electron populations 1.22418 0.87897 1.02130 1.00296 1.62060 1.07485 1.13786 1.43548 1.22416 1.01248 0.88716 1.00271 1.21648 0.95462 0.93536 0.91612 0.93176 1.21617 0.99939 0.94574 0.98788 1.21510 0.95730 1.00088 0.98426 1.22207 0.95979 0.98573 1.02200 1.21543 0.99244 0.91054 0.90656 0.90517 1.60762 1.06188 1.62219 1.02227 1.22134 0.95904 0.97182 0.90783 1.20475 0.95960 0.95389 0.93337 1.21751 0.96300 0.99818 1.00577 1.21580 1.00202 0.95146 1.00224 1.19248 0.93809 0.95701 0.92917 1.22080 1.11001 1.35268 0.94160 0.92864 1.25776 0.94938 0.96363 1.02096 1.70715 1.20950 1.32240 1.31669 0.83527 0.75217 0.76055 0.75253 1.21583 1.21498 1.21537 1.21617 0.93865 1.00918 0.97211 0.95693 0.91726 0.91232 0.90875 0.91880 0.95433 0.92145 0.91310 0.91991 0.91749 0.91586 0.91945 0.83962 0.91780 0.96014 0.91610 0.94957 0.94228 0.94292 0.93918 0.92644 0.97679 0.97940 0.92160 0.91177 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.21 60.07 0.55 0.74 16 2 N -0.54 -5.60 4.89 -243.17 -1.19 -6.79 16 3 C 0.02 0.21 9.11 60.06 0.55 0.76 16 4 C 0.09 0.92 1.71 -67.71 -0.12 0.80 16 5 H 0.05 0.63 7.21 -51.93 -0.37 0.26 16 6 C -0.11 -1.09 4.97 -26.74 -0.13 -1.22 16 7 C -0.12 -1.22 5.67 -26.74 -0.15 -1.38 16 8 C -0.15 -1.65 5.52 -26.73 -0.15 -1.80 16 9 C 0.09 1.04 2.85 -67.71 -0.19 0.85 16 10 H 0.08 0.97 7.80 -51.93 -0.41 0.56 16 11 N -0.68 -9.69 4.98 -106.72 -0.53 -10.22 16 12 C 0.07 1.18 4.45 -3.82 -0.02 1.16 16 13 C -0.05 -1.03 0.60 -154.51 -0.09 -1.12 16 14 C -0.13 -2.41 7.89 37.15 0.29 -2.12 16 15 C -0.11 -2.26 8.06 37.16 0.30 -1.96 16 16 C 0.02 0.52 3.35 -27.88 -0.09 0.43 16 17 C -0.59 -16.29 7.65 -34.44 -0.26 -16.55 16 18 H 0.05 1.46 5.68 -52.49 -0.30 1.16 16 19 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 20 N -0.92 -28.31 13.65 55.43 0.76 -27.56 16 21 Si 1.07 25.62 29.90 -169.99 -5.08 20.53 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.10 -1.08 4.56 -26.73 -0.12 -1.20 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.07 0.57 6.30 -51.93 -0.33 0.25 16 29 H 0.07 0.70 6.23 -51.93 -0.32 0.37 16 30 H 0.06 0.53 8.12 -51.93 -0.42 0.10 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.56 6.40 -51.93 -0.33 0.22 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.70 6.26 -51.93 -0.32 0.38 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 38 H 0.34 4.77 3.60 -39.29 -0.14 4.63 16 39 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 40 H 0.02 0.38 7.43 -51.93 -0.39 -0.01 16 41 H 0.06 1.37 6.62 -51.93 -0.34 1.02 16 42 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.76 7.60 -51.92 -0.39 0.36 16 46 H 0.05 1.18 6.61 -51.93 -0.34 0.84 16 47 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 48 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 49 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 50 H 0.07 0.82 6.34 -51.93 -0.33 0.49 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -29.36 366.59 -9.87 -39.24 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -9.62 Total: 1.65 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 0.27 Total: -22.38 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.96 Total: -44.56 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.36 -9.87 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175012225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.008 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds