Wall clock time and date at job start Tue Mar 31 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00111 * 2 1 4 4 C 1.46898 * 111.00078 * 123.95362 * 2 1 3 5 5 H 1.09002 * 109.47032 * 54.99709 * 4 2 1 6 6 C 1.52999 * 109.47548 * 295.00001 * 4 2 1 7 7 C 1.52997 * 109.47317 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 4 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 10 10 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.47255 * 300.00730 * 9 8 7 12 12 C 1.46903 * 110.99546 * 274.99631 * 11 9 8 13 13 C 1.53004 * 109.46932 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47004 * 299.99873 * 13 12 11 15 15 C 1.52995 * 109.46796 * 60.00002 * 13 12 11 16 16 C 1.53004 * 109.46982 * 179.97438 * 13 12 11 17 17 C 1.50693 * 109.47019 * 180.02562 * 16 13 12 18 18 H 1.08003 * 119.99905 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00256 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99445 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47210 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47629 * 119.99502 * 21 19 17 24 24 H 1.48502 * 109.47042 * 239.99505 * 21 19 17 25 25 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 26 26 H 1.09001 * 109.46927 * 296.04897 * 1 2 3 27 27 H 1.08999 * 109.47151 * 56.04212 * 1 2 3 28 28 H 1.08997 * 109.47339 * 176.04809 * 1 2 3 29 29 H 1.09008 * 109.46689 * 183.95707 * 3 2 1 30 30 H 1.09003 * 109.47283 * 303.95381 * 3 2 1 31 31 H 1.08994 * 109.47461 * 63.95735 * 3 2 1 32 32 H 1.08996 * 109.46929 * 59.99097 * 6 4 2 33 33 H 1.09002 * 109.46716 * 299.99902 * 6 4 2 34 34 H 1.09002 * 109.47153 * 299.99641 * 7 6 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 7 6 4 36 36 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 37 37 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 38 38 H 1.00895 * 110.99849 * 38.94624 * 11 9 8 39 39 H 1.08998 * 109.47373 * 299.99875 * 12 11 9 40 40 H 1.09000 * 109.47394 * 60.00067 * 12 11 9 41 41 H 1.09003 * 109.47173 * 60.00366 * 14 13 12 42 42 H 1.09001 * 109.46805 * 179.97438 * 14 13 12 43 43 H 1.08996 * 109.47727 * 300.00083 * 14 13 12 44 44 H 1.08998 * 109.47118 * 60.00187 * 15 13 12 45 45 H 1.09001 * 109.46954 * 179.97438 * 15 13 12 46 46 H 1.08994 * 109.47395 * 299.99870 * 15 13 12 47 47 H 1.08995 * 109.46730 * 300.00410 * 16 13 12 48 48 H 1.08999 * 109.46610 * 60.00008 * 16 13 12 49 49 H 0.97003 * 119.99674 * 180.02562 * 20 19 17 50 50 H 1.09002 * 109.47153 * 60.00231 * 25 9 8 51 51 H 1.09001 * 109.47289 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5753 -1.7717 1.1240 6 6 1.6091 -0.0696 2.4440 7 6 2.1569 -0.8677 3.6287 8 6 3.6812 -0.9509 3.5265 9 6 4.0676 -1.6474 2.2202 10 1 5.1535 -1.7070 2.1475 11 7 3.5008 -3.0026 2.2015 12 6 4.3825 -3.9514 2.8946 13 6 3.7598 -5.3485 2.8550 14 6 2.3965 -5.3190 3.5487 15 6 3.5824 -5.7865 1.3999 16 6 4.6784 -6.3369 3.5763 17 6 4.0655 -7.7130 3.5367 18 1 3.1156 -7.8671 3.0465 19 6 4.7169 -8.7751 4.1271 20 7 5.8734 -8.5872 4.7245 21 14 3.9575 -10.4810 4.0775 22 1 2.6634 -10.4258 3.3510 23 1 4.8785 -11.4128 3.3786 24 1 3.7263 -10.9604 5.4638 25 6 3.5198 -0.8492 1.0354 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0829 1.3431 -0.0709 30 1 1.5898 1.9164 -0.8524 31 1 1.7045 1.8724 0.9232 32 1 0.5232 -0.0106 2.5169 33 1 2.0293 0.9361 2.4575 34 1 1.7364 -1.8733 3.6150 35 1 1.8821 -0.3713 4.5594 36 1 4.1017 0.0546 3.5403 37 1 4.0714 -1.5199 4.3704 38 1 2.5741 -3.0124 2.6005 39 1 5.3539 -3.9721 2.4007 40 1 4.5086 -3.6395 3.9314 41 1 1.7423 -4.6150 3.0344 42 1 1.9527 -6.3142 3.5200 43 1 2.5229 -5.0069 4.5853 44 1 4.5537 -5.8075 0.9057 45 1 3.1392 -6.7820 1.3716 46 1 2.9282 -5.0825 0.8856 47 1 5.6495 -6.3576 3.0817 48 1 4.8053 -6.0248 4.6129 49 1 6.3319 -9.3345 5.1396 50 1 3.9403 0.1563 1.0492 51 1 3.7946 -1.3456 0.1047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175012240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:35 Heat of formation + Delta-G solvation = -19.863953 kcal Electronic energy + Delta-G solvation = -23991.083503 eV Core-core repulsion = 20924.221117 eV Total energy + Delta-G solvation = -3066.862386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02621 -37.57700 -35.93816 -32.97144 -31.92280 -30.25985 -28.83633 -27.74853 -26.81236 -26.28962 -25.01501 -24.36934 -22.54260 -22.37102 -20.83912 -18.70154 -17.91836 -16.42764 -16.13153 -15.40773 -15.34213 -14.85264 -14.68697 -14.53510 -14.25749 -13.85385 -13.61165 -13.16991 -12.88045 -12.79887 -12.43747 -12.34273 -12.04977 -11.98860 -11.92731 -11.86525 -11.60159 -11.52150 -11.11942 -10.94638 -10.85945 -10.72946 -10.67346 -10.48481 -10.45662 -10.19905 -10.09325 -10.03281 -9.64210 -8.97141 -8.77736 -8.37683 -8.29463 -7.96075 -5.93904 -3.93655 3.33990 3.41861 3.45487 3.82522 4.44534 4.53565 4.63098 4.69304 4.87333 4.99407 5.04927 5.14980 5.18910 5.32788 5.35514 5.39407 5.42075 5.46405 5.55792 5.58608 5.67734 5.72736 5.74880 5.80209 5.83729 5.93161 5.96997 6.02968 6.05841 6.14250 6.27079 6.30402 6.39437 6.43047 6.56195 6.71772 6.84439 6.87438 6.92737 6.96133 7.25125 7.30253 7.31723 7.49733 7.73147 7.79065 7.90009 8.06978 8.51783 9.12136 9.69080 11.17844 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030968 B = 0.003444 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.936151 B = 8128.832730 C = 8397.407143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.017 3.983 4 C 0.086 3.914 5 H 0.091 0.909 6 C -0.152 4.152 7 C -0.115 4.115 8 C -0.151 4.151 9 C 0.087 3.913 10 H 0.077 0.923 11 N -0.679 5.679 12 C 0.069 3.931 13 C -0.058 4.058 14 C -0.128 4.128 15 C -0.115 4.115 16 C 0.034 3.966 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.095 4.095 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.338 0.662 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 50 H 0.058 0.942 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 20.119 -5.930 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.131 4.131 4 C -0.022 4.022 5 H 0.109 0.891 6 C -0.191 4.191 7 C -0.154 4.154 8 C -0.190 4.190 9 C -0.024 4.024 10 H 0.095 0.905 11 N -0.312 5.312 12 C -0.059 4.059 13 C -0.059 4.059 14 C -0.185 4.185 15 C -0.173 4.173 16 C -0.004 4.004 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.134 4.134 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.160 0.840 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.067 0.933 50 H 0.076 0.924 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.656 19.641 -6.923 22.188 hybrid contribution -0.700 -0.308 1.896 2.044 sum -8.356 19.334 -5.027 21.653 Atomic orbital electron populations 1.22397 0.87801 1.02346 1.00152 1.62245 1.07569 1.13573 1.42760 1.22461 1.01160 0.89376 1.00108 1.21753 0.96106 0.97665 0.86707 0.89075 1.22229 1.00478 0.99983 0.96436 1.21440 0.95849 1.00395 0.97678 1.22216 0.96022 1.01267 0.99507 1.21537 0.99072 0.88992 0.92840 0.90472 1.60768 1.06010 1.04777 1.59663 1.22130 0.96110 0.92560 0.95129 1.20620 0.95866 0.92971 0.96395 1.21763 0.96812 1.01356 0.98596 1.21590 1.00365 1.00193 0.95129 1.19120 0.93924 0.92638 0.94686 1.21289 1.05709 0.92932 1.34399 0.92248 1.25019 0.95008 0.98897 0.95733 1.69981 1.15223 1.31150 1.37448 0.86616 0.79345 0.84966 0.77561 1.19769 1.21164 1.21243 1.21570 0.93670 0.99021 0.99089 0.95548 0.91747 0.91271 0.91075 0.91913 0.95476 0.92193 0.91928 0.91716 0.92146 0.91932 0.91790 0.84047 0.91674 0.96020 0.95015 0.91765 0.94200 0.94189 0.92826 0.93837 0.96706 0.97015 0.93266 0.92352 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.31 60.06 0.56 0.75 16 2 N -0.54 -5.47 5.01 -243.18 -1.22 -6.69 16 3 C 0.02 0.15 8.82 60.07 0.53 0.68 16 4 C 0.09 0.91 1.99 -67.71 -0.13 0.77 16 5 H 0.09 1.11 7.20 -51.93 -0.37 0.74 16 6 C -0.15 -1.45 4.51 -26.73 -0.12 -1.57 16 7 C -0.12 -1.18 5.67 -26.73 -0.15 -1.33 16 8 C -0.15 -1.64 5.52 -26.73 -0.15 -1.79 16 9 C 0.09 1.04 2.86 -67.71 -0.19 0.85 16 10 H 0.08 0.97 7.80 -51.93 -0.40 0.57 16 11 N -0.68 -9.61 4.98 -106.72 -0.53 -10.14 16 12 C 0.07 1.19 4.44 -3.82 -0.02 1.17 16 13 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 14 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 15 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 16 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 17 C -0.50 -13.88 7.65 -34.44 -0.26 -14.15 16 18 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C -0.10 -1.04 4.71 -26.73 -0.13 -1.17 16 26 H 0.03 0.22 6.44 -51.93 -0.33 -0.12 16 27 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.60 6.33 -51.92 -0.33 0.27 16 30 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.03 0.22 6.28 -51.93 -0.33 -0.11 16 32 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 33 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 34 H 0.06 0.72 6.26 -51.93 -0.32 0.40 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.77 7.45 -51.93 -0.39 0.39 16 38 H 0.34 4.68 3.60 -39.29 -0.14 4.54 16 39 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 40 H 0.02 0.38 7.43 -51.93 -0.39 -0.01 16 41 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 42 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 46 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 51 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -28.78 364.61 -9.83 -38.61 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -9.51 Total: 1.21 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 0.22 Total: -18.92 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -1.01 Total: -43.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.78 -9.83 -38.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175012240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.746 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds