Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 111.00105 * 2 1 4 4 C 1.46903 * 110.99891 * 123.94770 * 2 1 3 5 5 H 1.09008 * 109.46975 * 55.00639 * 4 2 1 6 6 C 1.52997 * 109.47382 * 295.00249 * 4 2 1 7 7 C 1.53009 * 109.46988 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.46831 * 60.00080 * 7 6 4 9 9 C 1.52997 * 109.47269 * 299.99748 * 8 7 6 10 10 H 1.08997 * 109.47283 * 300.00441 * 9 8 7 11 11 N 1.46907 * 109.47211 * 180.02562 * 9 8 7 12 12 C 1.46902 * 110.99665 * 84.99857 * 11 9 8 13 13 C 1.53001 * 109.46901 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46637 * 60.00331 * 13 12 11 15 15 C 1.52996 * 109.47302 * 300.00243 * 13 12 11 16 16 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 13 12 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 13 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47116 * 59.99536 * 21 19 17 23 23 H 1.48500 * 109.46585 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46730 * 299.99515 * 21 19 17 25 25 C 1.53002 * 109.47179 * 60.00517 * 9 8 7 26 26 H 1.08997 * 109.47338 * 296.04758 * 1 2 3 27 27 H 1.08997 * 109.46864 * 56.04749 * 1 2 3 28 28 H 1.08999 * 109.46901 * 176.04894 * 1 2 3 29 29 H 1.08998 * 109.47267 * 183.95177 * 3 2 1 30 30 H 1.09002 * 109.46670 * 303.95164 * 3 2 1 31 31 H 1.08998 * 109.46919 * 63.94909 * 3 2 1 32 32 H 1.09002 * 109.47224 * 60.00068 * 6 4 2 33 33 H 1.08997 * 109.47283 * 299.99679 * 6 4 2 34 34 H 1.08997 * 109.47033 * 300.00060 * 7 6 4 35 35 H 1.09003 * 109.46505 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.46648 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47328 * 60.00161 * 8 7 6 38 38 H 1.00898 * 110.99982 * 208.95288 * 11 9 8 39 39 H 1.09001 * 109.46712 * 60.00151 * 12 11 9 40 40 H 1.09002 * 109.47411 * 300.00262 * 12 11 9 41 41 H 1.09000 * 109.46986 * 179.97438 * 14 13 12 42 42 H 1.08993 * 109.47662 * 299.99908 * 14 13 12 43 43 H 1.09002 * 109.47075 * 60.00414 * 14 13 12 44 44 H 1.08992 * 109.47554 * 299.99692 * 15 13 12 45 45 H 1.09004 * 109.47108 * 59.99942 * 15 13 12 46 46 H 1.09000 * 109.46870 * 179.97438 * 15 13 12 47 47 H 1.09002 * 109.47398 * 300.00496 * 16 13 12 48 48 H 1.09001 * 109.47194 * 60.00677 * 16 13 12 49 49 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 50 50 H 1.08997 * 109.47075 * 59.99796 * 25 9 8 51 51 H 1.09001 * 109.47156 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5754 -1.7717 1.1241 6 6 1.6090 -0.0694 2.4440 7 6 2.1569 -0.8675 3.6289 8 6 3.6811 -0.9505 3.5267 9 6 4.0675 -1.6471 2.2204 10 1 3.6471 -2.6526 2.2067 11 7 5.5312 -1.7274 2.1226 12 6 6.0420 -2.9090 2.8303 13 6 7.5661 -2.9587 2.7058 14 6 8.1694 -1.6948 3.3219 15 6 7.9547 -3.0414 1.2284 16 6 8.0980 -4.1897 3.4424 17 6 9.5993 -4.2383 3.3203 18 1 10.1217 -3.4680 2.7726 19 6 10.3059 -5.2662 3.9079 20 7 9.6697 -6.2040 4.5753 21 14 12.1668 -5.3260 3.7571 22 1 12.7517 -4.0999 4.3569 23 1 12.6830 -6.5210 4.4719 24 1 12.5449 -5.4046 2.3233 25 6 3.5198 -0.8490 1.0355 26 1 -0.3634 0.4512 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3433 -0.0708 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8724 0.9233 32 1 0.5231 -0.0105 2.5170 33 1 2.0291 0.9363 2.4576 34 1 1.7364 -1.8730 3.6151 35 1 1.8811 -0.3714 4.5595 36 1 4.0714 -1.5187 4.3711 37 1 4.1016 0.0550 3.5405 38 1 5.8297 -1.7259 1.1588 39 1 5.6123 -3.8094 2.3911 40 1 5.7647 -2.8503 3.8828 41 1 9.2553 -1.7304 3.2337 42 1 7.7904 -0.8180 2.7970 43 1 7.8926 -1.6359 4.3746 44 1 7.5249 -3.9418 0.7895 45 1 7.5757 -2.1646 0.7033 46 1 9.0406 -3.0764 1.1398 47 1 7.8211 -4.1313 4.4950 48 1 7.6682 -5.0899 3.0030 49 1 10.1667 -6.9274 4.9883 50 1 3.9403 0.1565 1.0493 51 1 3.7947 -1.3455 0.1049 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175012257.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -23.766985 kcal Electronic energy + Delta-G solvation = -23491.777124 eV Core-core repulsion = 20424.745490 eV Total energy + Delta-G solvation = -3067.031634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84659 -37.63999 -35.90382 -33.40033 -32.07474 -30.21860 -28.65633 -27.82800 -26.80050 -26.29167 -25.17058 -24.23237 -22.52293 -22.21827 -20.41201 -19.57077 -17.79667 -16.31328 -16.19210 -15.46942 -15.24888 -14.78513 -14.75994 -14.60537 -14.27067 -14.07562 -13.68330 -13.34284 -12.96538 -12.66797 -12.40774 -12.29238 -12.13680 -12.06837 -11.96528 -11.85768 -11.71433 -11.29763 -11.04525 -10.96291 -10.86756 -10.77321 -10.59154 -10.51571 -10.43038 -10.36734 -10.16273 -10.05761 -9.63355 -8.96845 -8.79281 -8.48980 -8.28700 -8.02216 -5.93398 -3.93433 3.36575 3.41043 3.43383 3.68052 4.29852 4.51320 4.58892 4.76925 4.86794 4.94170 4.99811 5.15177 5.19304 5.24618 5.26415 5.37142 5.42086 5.42318 5.48259 5.53915 5.61435 5.72060 5.73928 5.81292 5.82490 5.91233 6.00706 6.02724 6.05215 6.15147 6.23908 6.33073 6.38075 6.42935 6.57610 6.70945 6.79998 6.81706 6.84856 6.87214 7.25407 7.29405 7.30699 7.48582 7.72614 7.77478 7.89895 8.07113 8.51740 9.11842 9.69140 11.18281 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.002996 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.052202 B = 9342.091262 C = 9591.494978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.016 3.984 4 C 0.087 3.913 5 H 0.080 0.920 6 C -0.151 4.151 7 C -0.114 4.114 8 C -0.106 4.106 9 C 0.089 3.911 10 H 0.040 0.960 11 N -0.683 5.683 12 C 0.071 3.929 13 C -0.058 4.058 14 C -0.115 4.115 15 C -0.128 4.128 16 C 0.034 3.966 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.278 1.278 25 C -0.111 4.111 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.338 0.662 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.033 0.967 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.012 0.988 49 H 0.259 0.741 50 H 0.072 0.928 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.089 13.391 -6.808 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.132 4.132 4 C -0.022 4.022 5 H 0.099 0.901 6 C -0.190 4.190 7 C -0.153 4.153 8 C -0.145 4.145 9 C -0.021 4.021 10 H 0.057 0.943 11 N -0.315 5.315 12 C -0.057 4.057 13 C -0.059 4.059 14 C -0.172 4.172 15 C -0.186 4.186 16 C -0.003 4.003 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.149 4.149 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.158 0.842 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.032 0.968 48 H 0.030 0.970 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.792 13.421 -6.637 23.254 hybrid contribution 0.439 -0.541 0.190 0.723 sum -17.353 12.880 -6.447 22.552 Atomic orbital electron populations 1.22399 0.87718 1.02174 1.00407 1.62245 1.07627 1.14034 1.42415 1.22482 1.01390 0.88986 1.00316 1.21714 0.95537 0.97394 0.87530 0.90140 1.22215 1.00365 1.00337 0.96122 1.21465 0.96343 1.00065 0.97442 1.21521 0.94016 1.01455 0.97473 1.21442 0.88753 0.97313 0.94636 0.94252 1.60588 1.08169 1.43205 1.19505 1.22136 0.96360 0.89068 0.98163 1.20623 0.91272 0.98272 0.95698 1.21586 1.00451 0.96029 0.99150 1.21763 1.02348 0.98688 0.95787 1.19116 0.95613 0.90761 0.94847 1.21210 0.92054 1.08588 1.32635 0.92358 1.25016 0.98085 0.95896 0.95604 1.69957 1.35424 1.12981 1.35464 0.86728 0.86261 0.77315 0.78114 1.20327 1.21463 1.20362 1.21751 0.93637 1.01509 0.98013 0.95351 0.91590 0.91491 0.90813 0.91781 0.95195 0.92245 0.91561 0.92151 0.92023 0.91796 0.91483 0.84187 0.96004 0.91691 0.92799 0.93891 0.94281 0.94146 0.94791 0.91794 0.96755 0.96973 0.93135 0.90979 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.31 60.07 0.56 0.72 16 2 N -0.54 -5.01 5.01 -243.17 -1.22 -6.23 16 3 C 0.02 0.13 8.82 60.07 0.53 0.66 16 4 C 0.09 0.84 2.23 -67.71 -0.15 0.68 16 5 H 0.08 0.81 8.13 -51.92 -0.42 0.39 16 6 C -0.15 -1.35 4.51 -26.73 -0.12 -1.47 16 7 C -0.11 -1.11 5.92 -26.73 -0.16 -1.26 16 8 C -0.11 -1.25 5.42 -26.73 -0.15 -1.39 16 9 C 0.09 1.09 2.49 -67.71 -0.17 0.93 16 10 H 0.04 0.52 7.80 -51.93 -0.40 0.12 16 11 N -0.68 -9.85 5.52 -106.72 -0.59 -10.44 16 12 C 0.07 1.24 4.44 -3.82 -0.02 1.23 16 13 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 14 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 15 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 16 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 17 C -0.51 -13.97 7.65 -34.44 -0.26 -14.23 16 18 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.11 -1.18 4.27 -26.73 -0.11 -1.30 16 26 H 0.03 0.21 6.44 -51.93 -0.33 -0.13 16 27 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.63 6.33 -51.93 -0.33 0.31 16 30 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.03 0.24 6.28 -51.93 -0.33 -0.09 16 32 H 0.06 0.50 6.52 -51.93 -0.34 0.16 16 33 H 0.07 0.61 6.39 -51.93 -0.33 0.28 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.83 7.45 -51.93 -0.39 0.45 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.34 4.76 6.39 -39.29 -0.25 4.51 16 39 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 40 H 0.06 1.18 7.44 -51.93 -0.39 0.79 16 41 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 42 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 46 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 51 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -28.88 370.34 -10.04 -38.91 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -9.77 Total: 0.33 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 0.24 Total: -18.55 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -1.07 Total: -43.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.88 -10.04 -38.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175012257.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.145 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds