Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 110.99984 * 2 1 4 4 C 1.50710 * 109.47040 * 293.95465 * 3 2 1 5 5 H 1.07998 * 119.99532 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99939 * 180.02562 * 4 3 2 7 7 N 1.31523 * 120.00333 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00195 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47020 * 59.99330 * 8 6 4 10 10 H 1.48497 * 109.47399 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46824 * 300.00004 * 8 6 4 12 12 C 1.46899 * 111.00216 * 123.95165 * 2 1 3 13 13 C 1.50697 * 109.46861 * 66.04327 * 12 2 1 14 14 O 1.21291 * 120.00365 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00055 * 179.97438 * 13 12 2 16 16 C 1.46496 * 120.00119 * 0.02562 * 15 13 12 17 17 C 1.46505 * 120.00261 * 180.02562 * 15 13 12 18 18 C 1.52997 * 109.47212 * 270.00136 * 17 15 13 19 19 C 1.53001 * 109.47242 * 295.00240 * 18 17 15 20 20 C 1.52997 * 109.47242 * 179.97438 * 19 18 17 21 21 C 1.53006 * 109.47380 * 59.99720 * 20 19 18 22 22 C 1.53002 * 109.46654 * 300.00174 * 21 20 19 23 23 C 1.52994 * 109.47404 * 174.99693 * 18 17 15 24 24 H 1.09003 * 109.47024 * 296.04873 * 1 2 3 25 25 H 1.09001 * 109.47593 * 56.04547 * 1 2 3 26 26 H 1.09001 * 109.47321 * 176.04911 * 1 2 3 27 27 H 1.09001 * 109.47539 * 53.95021 * 3 2 1 28 28 H 1.09004 * 109.47279 * 173.95889 * 3 2 1 29 29 H 0.96996 * 120.00277 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47159 * 306.04874 * 12 2 1 31 31 H 1.08992 * 109.47329 * 186.04307 * 12 2 1 32 32 H 1.09004 * 109.47335 * 270.00228 * 16 15 13 33 33 H 1.09006 * 109.47349 * 29.99742 * 16 15 13 34 34 H 1.09003 * 109.47665 * 149.99907 * 16 15 13 35 35 H 1.09002 * 109.47068 * 30.00196 * 17 15 13 36 36 H 1.09001 * 109.47372 * 150.00283 * 17 15 13 37 37 H 1.09008 * 109.47017 * 54.99771 * 18 17 15 38 38 H 1.09008 * 109.46731 * 299.99706 * 19 18 17 39 39 H 1.08998 * 109.47430 * 59.99652 * 19 18 17 40 40 H 1.08998 * 109.46934 * 299.99660 * 20 19 18 41 41 H 1.09000 * 109.47325 * 179.97438 * 20 19 18 42 42 H 1.08992 * 109.47003 * 180.02562 * 21 20 19 43 43 H 1.08998 * 109.46692 * 59.99766 * 21 20 19 44 44 H 1.08995 * 109.46734 * 299.99283 * 22 21 20 45 45 H 1.09002 * 109.46264 * 180.02562 * 22 21 20 46 46 H 1.09000 * 109.47476 * 300.00087 * 23 18 17 47 47 H 1.09008 * 109.46970 * 60.00049 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0738 1.5114 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 2.7128 4.0016 -0.6155 8 14 1.5838 4.1865 -3.1387 9 1 0.1066 4.2236 -3.2866 10 1 2.1158 5.5728 -3.1387 11 1 2.1756 3.4286 -4.2704 12 6 1.9955 -0.7659 1.1376 13 6 1.6369 -2.2203 0.9729 14 8 1.0053 -2.5832 0.0031 15 7 2.0189 -3.1180 1.9028 16 6 2.7821 -2.6799 3.0739 17 6 1.6708 -4.5320 1.7424 18 6 0.3190 -4.8029 2.4058 19 6 0.4387 -4.5842 3.9154 20 6 -0.9133 -4.8544 4.5787 21 6 -1.3362 -6.2991 4.3046 22 6 -1.4559 -6.5177 2.7950 23 6 -0.1034 -6.2476 2.1317 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.9880 4.9174 -0.7777 30 1 1.5611 -0.3872 2.0627 31 1 3.0797 -0.6611 1.1756 32 1 3.8482 -2.7289 2.8520 33 1 2.5096 -1.6541 3.3223 34 1 2.5566 -3.3305 3.9189 35 1 1.6095 -4.7731 0.6811 36 1 2.4361 -5.1502 2.2118 37 1 -0.4287 -4.1223 1.9982 38 1 1.1863 -5.2648 4.3229 39 1 0.7395 -3.5549 4.1106 40 1 -1.6605 -4.1735 4.1710 41 1 -0.8279 -4.6990 5.6541 42 1 -2.2996 -6.4914 4.7768 43 1 -0.5890 -6.9799 4.7122 44 1 -2.2032 -5.8369 2.3875 45 1 -1.7577 -7.5468 2.5999 46 1 -0.1887 -6.4035 1.0563 47 1 0.6443 -6.9283 2.5393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177183763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = -48.707923 kcal Electronic energy + Delta-G solvation = -23076.735678 eV Core-core repulsion = 19872.789429 eV Total energy + Delta-G solvation = -3203.946249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02259 -38.51854 -36.10616 -35.18389 -32.51640 -31.92496 -30.92146 -28.43891 -27.31494 -26.90244 -25.24385 -23.75364 -22.78464 -21.66524 -20.45278 -19.91009 -18.77202 -16.82273 -16.31221 -16.10923 -15.76327 -15.16683 -14.69693 -14.45893 -14.35312 -14.12939 -13.91752 -13.75741 -13.35001 -12.93728 -12.69290 -12.61944 -12.41811 -12.18338 -12.08511 -11.76606 -11.69095 -11.37988 -11.32696 -11.10199 -10.99034 -10.81210 -10.69613 -10.64517 -10.51984 -10.33830 -10.17782 -9.92720 -9.41031 -9.01492 -8.49142 -8.40236 -7.18541 -6.00268 -4.00753 3.00800 3.11976 3.37517 3.40329 3.44967 4.44869 4.46905 4.53974 4.56407 4.79103 4.97918 5.01909 5.10690 5.14772 5.18418 5.27173 5.29687 5.32381 5.35975 5.37834 5.42376 5.48379 5.62212 5.73333 5.76701 5.81704 5.85390 5.86423 5.92000 5.97847 6.00880 6.05478 6.17793 6.29340 6.36335 6.44540 6.66933 6.94222 7.25905 7.33335 7.51808 7.83948 8.08530 8.22601 8.52043 8.61923 9.07128 9.63208 11.10833 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032901 B = 0.003158 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.839586 B = 8865.334215 C = 9084.893395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.524 5.524 3 C 0.194 3.806 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.901 5.901 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.040 3.960 13 C 0.516 3.484 14 O -0.517 6.517 15 N -0.625 5.625 16 C 0.074 3.926 17 C 0.122 3.878 18 C -0.103 4.103 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.111 4.111 24 H 0.003 0.997 25 H 0.073 0.927 26 H 0.064 0.936 27 H -0.008 1.008 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 -20.156 13.142 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.249 5.249 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.092 4.092 13 C 0.304 3.696 14 O -0.391 6.391 15 N -0.361 5.361 16 C -0.069 4.069 17 C -0.001 4.001 18 C -0.123 4.123 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.149 4.149 24 H 0.022 0.978 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.009 0.991 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.430 -20.371 12.198 23.990 hybrid contribution -0.325 1.013 0.120 1.071 sum -3.755 -19.358 12.318 23.250 Atomic orbital electron populations 1.22346 0.88089 1.01108 0.99845 1.61845 1.07798 1.17234 1.38006 1.19777 0.95303 0.81160 0.96883 1.21131 1.34710 0.96868 1.01653 0.91739 1.24979 0.95304 0.97276 0.97063 1.69947 1.38510 1.11520 1.34145 0.86532 0.78742 0.78203 0.83783 1.20251 1.21386 1.20111 1.21976 1.01766 0.90563 0.94903 1.20998 0.78646 0.88270 0.81682 1.90636 1.38510 1.80285 1.29629 1.47915 1.56770 1.07814 1.23560 1.21908 0.95851 1.01196 0.87983 1.21427 0.95445 0.81308 1.01913 1.21564 0.97978 0.97133 0.95579 1.21695 0.97130 1.01550 0.94894 1.21535 0.97540 0.96715 0.99981 1.21530 1.00938 0.96868 0.96255 1.21525 0.97559 1.01177 0.95400 1.21507 0.96969 0.95817 1.00616 0.97838 0.90798 0.91767 0.99064 0.95223 0.92903 0.93296 0.88680 0.92673 0.90858 0.90969 0.89928 0.91090 0.90670 0.92225 0.91559 0.92058 0.92252 0.92356 0.92186 0.91970 0.92174 0.91742 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.03 60.06 0.54 1.30 16 2 N -0.52 -12.19 4.49 -245.83 -1.10 -13.29 16 3 C 0.19 5.16 4.72 -4.97 -0.02 5.14 16 4 C -0.51 -14.65 8.46 -34.44 -0.29 -14.94 16 5 H 0.06 1.88 7.12 -52.49 -0.37 1.51 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.04 0.73 4.00 -4.98 -0.02 0.71 16 13 C 0.52 8.90 7.40 -10.99 -0.08 8.81 16 14 O -0.52 -10.74 13.89 5.55 0.08 -10.67 16 15 N -0.62 -7.97 2.70 -181.57 -0.49 -8.46 16 16 C 0.07 0.69 9.31 59.84 0.56 1.25 16 17 C 0.12 1.35 4.90 -4.04 -0.02 1.33 16 18 C -0.10 -1.05 2.39 -90.62 -0.22 -1.26 16 19 C -0.12 -0.99 4.19 -26.73 -0.11 -1.11 16 20 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 22 C -0.12 -0.97 5.92 -26.70 -0.16 -1.13 16 23 C -0.11 -0.97 5.21 -26.71 -0.14 -1.10 16 24 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 25 H 0.07 1.72 6.76 -51.93 -0.35 1.36 16 26 H 0.06 1.36 5.88 -51.93 -0.31 1.06 16 27 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 28 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 30 H 0.05 0.83 7.38 -51.93 -0.38 0.44 16 31 H 0.10 1.65 7.90 -51.93 -0.41 1.24 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 34 H 0.07 0.52 5.98 -51.93 -0.31 0.21 16 35 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 36 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.07 0.61 5.89 -51.93 -0.31 0.30 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -32.66 358.98 -9.39 -42.05 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -8.62 Total: -4.18 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.38 Total: -1.71 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.86 Total: -48.01 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.66 -9.39 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177183763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.659 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds