Wall clock time and date at job start Tue Mar 31 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99617 * 2 1 4 4 C 1.50704 * 109.47230 * 293.95106 * 3 2 1 5 5 H 1.08005 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99975 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00071 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00097 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47063 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47266 * 120.00045 * 8 6 4 11 11 H 1.48504 * 109.47149 * 240.00185 * 8 6 4 12 12 C 1.46896 * 111.00203 * 123.95281 * 2 1 3 13 13 C 1.50699 * 109.47050 * 66.04804 * 12 2 1 14 14 O 1.21280 * 119.99966 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00093 * 180.02562 * 13 12 2 16 16 C 1.46497 * 120.00234 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47480 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 1.09002 * 109.47324 * 296.04685 * 1 2 3 25 25 H 1.08998 * 109.47334 * 56.04846 * 1 2 3 26 26 H 1.09007 * 109.47170 * 176.04268 * 1 2 3 27 27 H 1.08998 * 109.47296 * 53.95519 * 3 2 1 28 28 H 1.09002 * 109.46629 * 173.95299 * 3 2 1 29 29 H 0.97001 * 120.00323 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.47165 * 306.04806 * 12 2 1 31 31 H 1.08997 * 109.47437 * 186.04700 * 12 2 1 32 32 H 0.96996 * 120.00407 * 359.97438 * 15 13 12 33 33 H 1.08997 * 109.47622 * 59.99100 * 16 15 13 34 34 H 1.09006 * 109.47216 * 299.99688 * 16 15 13 35 35 H 1.09008 * 109.47149 * 59.99636 * 17 16 15 36 36 H 1.08997 * 109.47163 * 299.99707 * 17 16 15 37 37 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 38 38 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 39 39 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 47 47 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7135 4.0013 -0.6158 8 14 1.5825 4.1869 -3.1381 9 1 0.8134 3.2450 -3.9904 10 1 0.7560 5.3885 -2.8586 11 1 2.8240 4.5935 -3.8443 12 6 1.9954 -0.7659 1.1375 13 6 1.6370 -2.2204 0.9728 14 8 1.0055 -2.5832 0.0030 15 7 2.0181 -3.1179 1.9032 16 6 1.6701 -4.5319 1.7428 17 6 2.2183 -5.3297 2.9276 18 6 1.8544 -6.8063 2.7604 19 6 2.5655 -7.3705 1.5288 20 6 2.2021 -8.8473 1.3619 21 6 2.6410 -9.6242 2.6049 22 6 1.9298 -9.0600 3.8364 23 6 2.2929 -7.5836 4.0032 24 1 -0.3634 0.4513 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3634 -1.0253 -0.0709 27 1 1.5610 1.9274 0.8309 28 1 3.0796 1.3444 0.1083 29 1 2.9880 4.9175 -0.7777 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6610 1.1756 32 1 2.5234 -2.8278 2.6786 33 1 2.1051 -4.9105 0.8179 34 1 0.5858 -4.6371 1.7040 35 1 1.7836 -4.9511 3.8528 36 1 3.3025 -5.2245 2.9660 37 1 0.7761 -6.9026 2.6333 38 1 2.2532 -6.8168 0.6434 39 1 3.6438 -7.2742 1.6560 40 1 2.7091 -9.2494 0.4847 41 1 1.1238 -8.9440 1.2350 42 1 3.7192 -9.5275 2.7318 43 1 2.3816 -10.6762 2.4861 44 1 2.2421 -9.6137 4.7218 45 1 0.8516 -9.1567 3.7094 46 1 3.3710 -7.4873 4.1303 47 1 1.7861 -7.1816 4.8806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177190332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:47 Heat of formation + Delta-G solvation = -66.062561 kcal Electronic energy + Delta-G solvation = -21986.292103 eV Core-core repulsion = 18781.593301 eV Total energy + Delta-G solvation = -3204.698803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.64001 -38.94921 -36.14157 -35.06773 -32.73506 -32.45041 -31.09256 -29.09298 -27.52689 -26.71763 -24.36879 -23.46309 -22.68613 -21.15800 -20.77235 -20.09324 -19.71591 -16.83048 -16.25048 -16.00116 -15.71521 -15.38200 -14.94397 -14.55922 -14.47412 -14.28185 -14.13528 -13.72077 -13.59927 -13.31418 -12.83530 -12.43671 -12.39270 -12.22865 -11.88047 -11.79423 -11.59022 -11.43427 -11.34232 -11.13402 -10.97568 -10.80967 -10.76572 -10.64495 -10.51376 -10.38658 -10.24572 -9.94085 -9.41464 -9.03246 -8.86942 -8.41328 -7.19036 -6.00626 -4.00881 3.04317 3.31472 3.34168 3.41293 3.48286 4.32279 4.34098 4.42944 4.47068 4.71499 4.78585 4.99272 5.03832 5.10606 5.12599 5.15787 5.20828 5.23507 5.32597 5.35773 5.36346 5.47193 5.60483 5.67962 5.73218 5.80094 5.81584 5.84926 5.86572 5.90118 5.92711 5.97775 6.09560 6.18740 6.35608 6.44315 6.60552 6.95855 7.26318 7.33421 7.65949 7.85375 8.08947 8.22344 8.53799 8.63595 9.07651 9.63136 11.10514 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046739 B = 0.002330 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.930425 B =12013.871098 C =12227.766687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.524 5.524 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.066 0.934 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.037 3.963 13 C 0.513 3.487 14 O -0.519 6.519 15 N -0.743 5.743 16 C 0.120 3.880 17 C -0.127 4.127 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.004 0.996 25 H 0.074 0.926 26 H 0.064 0.936 27 H -0.008 1.008 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -24.862 11.977 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.248 5.248 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.084 0.916 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.095 4.095 13 C 0.300 3.700 14 O -0.394 6.394 15 N -0.397 5.397 16 C -0.004 4.004 17 C -0.164 4.164 18 C -0.102 4.102 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.151 4.151 24 H 0.022 0.978 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.010 0.990 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.110 -25.169 10.833 27.402 hybrid contribution -0.103 1.129 0.404 1.203 sum 0.007 -24.041 11.237 26.537 Atomic orbital electron populations 1.22360 0.88081 1.01148 0.99908 1.61846 1.07825 1.17239 1.37936 1.19799 0.95350 0.81177 0.96940 1.21207 1.34510 0.96834 1.01626 0.91622 1.24993 0.95344 0.97326 0.97104 1.69969 1.38615 1.11406 1.34089 0.86414 0.78143 0.79235 0.83500 1.19583 1.21146 1.21016 1.21948 1.01933 0.90463 0.95145 1.21002 0.78731 0.88310 0.81968 1.90643 1.38453 1.80593 1.29664 1.46089 1.59437 1.07863 1.26323 1.21325 1.00133 0.80453 0.98473 1.21848 1.01602 0.94828 0.98171 1.21085 1.00572 0.93285 0.95251 1.21678 1.00453 0.95609 0.97938 1.21539 1.01281 0.95386 0.97600 1.21546 1.00291 0.99014 0.94926 1.21522 1.00519 0.95865 0.97837 1.21566 1.01301 0.94923 0.97317 0.97754 0.90761 0.91753 0.99010 0.95173 0.93025 0.93186 0.88559 0.76941 0.91515 0.91980 0.91309 0.91231 0.90902 0.91389 0.91901 0.92061 0.92006 0.92089 0.92292 0.92187 0.92041 0.91936 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.03 60.06 0.54 1.27 16 2 N -0.52 -12.15 4.49 -245.82 -1.10 -13.25 16 3 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 4 C -0.50 -14.58 8.46 -34.44 -0.29 -14.88 16 5 H 0.07 1.92 7.12 -52.48 -0.37 1.55 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.04 0.67 5.45 -4.98 -0.03 0.64 16 13 C 0.51 8.73 7.55 -10.99 -0.08 8.65 16 14 O -0.52 -10.88 14.31 5.56 0.08 -10.80 16 15 N -0.74 -9.02 5.56 -60.30 -0.33 -9.36 16 16 C 0.12 1.28 5.43 -4.04 -0.02 1.26 16 17 C -0.13 -0.94 4.80 -26.73 -0.13 -1.07 16 18 C -0.08 -0.58 2.19 -90.62 -0.20 -0.78 16 19 C -0.12 -0.89 4.96 -26.73 -0.13 -1.02 16 20 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 21 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 22 C -0.12 -0.72 5.92 -26.76 -0.16 -0.87 16 23 C -0.11 -0.70 5.20 -26.76 -0.14 -0.84 16 24 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.07 1.72 6.76 -51.93 -0.35 1.37 16 26 H 0.06 1.36 5.88 -51.92 -0.31 1.06 16 27 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 28 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 0.83 8.12 -51.92 -0.42 0.40 16 31 H 0.10 1.61 7.93 -51.93 -0.41 1.20 16 32 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 33 H 0.07 0.79 6.57 -51.93 -0.34 0.45 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.57 6.57 -51.93 -0.34 0.23 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -33.03 365.28 -9.99 -43.02 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.78 Total: -3.00 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.08 Total: -2.99 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.70 Total: -48.85 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.03 -9.99 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177190332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.041 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds