Wall clock time and date at job start Tue Mar 31 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99617 * 2 1 4 4 C 1.50704 * 109.47230 * 293.95106 * 3 2 1 5 5 H 1.08005 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99975 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00071 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00097 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47063 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47266 * 120.00045 * 8 6 4 11 11 H 1.48504 * 109.47149 * 240.00185 * 8 6 4 12 12 C 1.46896 * 111.00203 * 123.95281 * 2 1 3 13 13 C 1.50699 * 109.47050 * 66.04804 * 12 2 1 14 14 O 1.21280 * 119.99966 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00093 * 180.02562 * 13 12 2 16 16 C 1.46497 * 120.00234 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47480 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 1.09002 * 109.47324 * 296.04685 * 1 2 3 25 25 H 1.08998 * 109.47334 * 56.04846 * 1 2 3 26 26 H 1.09007 * 109.47170 * 176.04268 * 1 2 3 27 27 H 1.08998 * 109.47296 * 53.95519 * 3 2 1 28 28 H 1.09002 * 109.46629 * 173.95299 * 3 2 1 29 29 H 0.97001 * 120.00323 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.47165 * 306.04806 * 12 2 1 31 31 H 1.08997 * 109.47437 * 186.04700 * 12 2 1 32 32 H 0.96996 * 120.00407 * 359.97438 * 15 13 12 33 33 H 1.08997 * 109.47622 * 59.99100 * 16 15 13 34 34 H 1.09006 * 109.47216 * 299.99688 * 16 15 13 35 35 H 1.09008 * 109.47149 * 59.99636 * 17 16 15 36 36 H 1.08997 * 109.47163 * 299.99707 * 17 16 15 37 37 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 38 38 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 39 39 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 47 47 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7135 4.0013 -0.6158 8 14 1.5825 4.1869 -3.1381 9 1 0.8134 3.2450 -3.9904 10 1 0.7560 5.3885 -2.8586 11 1 2.8240 4.5935 -3.8443 12 6 1.9954 -0.7659 1.1375 13 6 1.6370 -2.2204 0.9728 14 8 1.0055 -2.5832 0.0030 15 7 2.0181 -3.1179 1.9032 16 6 1.6701 -4.5319 1.7428 17 6 2.2183 -5.3297 2.9276 18 6 1.8544 -6.8063 2.7604 19 6 2.5655 -7.3705 1.5288 20 6 2.2021 -8.8473 1.3619 21 6 2.6410 -9.6242 2.6049 22 6 1.9298 -9.0600 3.8364 23 6 2.2929 -7.5836 4.0032 24 1 -0.3634 0.4513 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3634 -1.0253 -0.0709 27 1 1.5610 1.9274 0.8309 28 1 3.0796 1.3444 0.1083 29 1 2.9880 4.9175 -0.7777 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6610 1.1756 32 1 2.5234 -2.8278 2.6786 33 1 2.1051 -4.9105 0.8179 34 1 0.5858 -4.6371 1.7040 35 1 1.7836 -4.9511 3.8528 36 1 3.3025 -5.2245 2.9660 37 1 0.7761 -6.9026 2.6333 38 1 2.2532 -6.8168 0.6434 39 1 3.6438 -7.2742 1.6560 40 1 2.7091 -9.2494 0.4847 41 1 1.1238 -8.9440 1.2350 42 1 3.7192 -9.5275 2.7318 43 1 2.3816 -10.6762 2.4861 44 1 2.2421 -9.6137 4.7218 45 1 0.8516 -9.1567 3.7094 46 1 3.3710 -7.4873 4.1303 47 1 1.7861 -7.1816 4.8806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177190332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:46 Heat of formation + Delta-G solvation = -87.604214 kcal Electronic energy + Delta-G solvation = -21987.226219 eV Core-core repulsion = 18781.593301 eV Total energy + Delta-G solvation = -3205.632919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86621 -39.67890 -37.79466 -36.20500 -34.62575 -33.55783 -31.61682 -30.41773 -29.14011 -28.18522 -26.07130 -24.44354 -23.34789 -22.47637 -21.89036 -21.12712 -20.54733 -18.64696 -17.85030 -17.11295 -16.88798 -16.57680 -16.20153 -15.95004 -15.61185 -15.24006 -15.12656 -14.87527 -14.82555 -14.44442 -14.20061 -13.63764 -13.56650 -13.29221 -12.97026 -12.94192 -12.75732 -12.64921 -12.61346 -12.52884 -12.36156 -12.15135 -11.97676 -11.95523 -11.70626 -11.42714 -11.29947 -10.99150 -10.80971 -10.63798 -10.59517 -10.01802 -9.01302 -8.21337 -6.30188 1.40645 1.41370 1.55516 1.68491 2.15137 2.42130 3.11078 3.39889 3.73632 3.77954 3.85735 3.98113 4.10665 4.20332 4.32522 4.42413 4.43070 4.46480 4.51778 4.58101 4.60820 4.68528 4.68737 4.71284 4.75361 4.83654 5.02556 5.08055 5.10901 5.14395 5.15433 5.22982 5.27451 5.29679 5.35101 5.36396 5.43641 5.51083 5.55496 5.64370 5.64621 6.01895 6.28307 6.46565 6.70798 6.84662 7.34602 7.39125 8.89701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046739 B = 0.002330 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.930425 B =12013.871098 C =12227.766687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.004 3.996 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.034 3.966 13 C 0.517 3.483 14 O -0.565 6.565 15 N -0.719 5.719 16 C 0.120 3.880 17 C -0.115 4.115 18 C -0.080 4.080 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.014 0.986 25 H 0.053 0.947 26 H 0.072 0.928 27 H -0.028 1.028 28 H 0.014 0.986 29 H 0.266 0.734 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.415 0.585 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -25.663 12.913 28.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.082 3.918 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.793 3.207 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.201 1.201 12 C -0.097 4.097 13 C 0.303 3.697 14 O -0.443 6.443 15 N -0.374 5.374 16 C -0.003 4.003 17 C -0.153 4.153 18 C -0.099 4.099 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.148 4.148 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.090 0.910 27 H -0.010 1.010 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.391 -26.001 11.827 28.567 hybrid contribution -0.161 1.302 0.173 1.323 sum 0.229 -24.699 12.000 27.461 Atomic orbital electron populations 1.22238 0.87536 1.01262 0.99499 1.61689 1.08509 1.15533 1.41053 1.19453 0.94134 0.82864 0.95314 1.21469 1.34897 0.97585 1.02453 0.92613 1.25854 0.95013 0.97888 1.00692 1.70064 1.39186 1.11919 1.35927 0.85348 0.78151 0.78132 0.79064 1.19366 1.20109 1.20129 1.22037 1.02672 0.90767 0.94231 1.20751 0.78460 0.88321 0.82135 1.90629 1.40840 1.81119 1.31704 1.45878 1.58000 1.07912 1.25562 1.21426 0.99689 0.79560 0.99644 1.21781 1.02058 0.94432 0.96993 1.21058 1.00205 0.93091 0.95577 1.21666 1.00530 0.95895 0.97614 1.21542 1.01073 0.95134 0.98141 1.21540 1.00361 0.99186 0.94569 1.21530 1.00372 0.95840 0.98025 1.21540 1.01534 0.94863 0.96842 0.96733 0.92774 0.90992 1.01000 0.96801 0.92561 0.90992 0.87305 0.74818 0.92744 0.92938 0.89932 0.90265 0.91439 0.92875 0.91773 0.92134 0.92360 0.91971 0.91790 0.91338 0.92264 0.91618 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.89 9.03 127.69 1.15 3.04 16 2 N -0.54 -25.35 4.49 -931.64 -4.18 -29.53 16 3 C 0.21 11.28 4.72 85.56 0.40 11.68 16 4 C -0.53 -30.91 8.46 25.60 0.22 -30.70 16 5 H 0.06 3.32 7.12 -2.91 -0.02 3.30 16 6 C 0.00 0.21 5.46 84.65 0.46 0.68 16 7 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 8 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.03 1.21 5.45 85.56 0.47 1.67 16 13 C 0.52 17.12 7.55 87.66 0.66 17.78 16 14 O -0.56 -23.68 14.31 -3.03 -0.04 -23.73 16 15 N -0.72 -16.21 5.56 -463.07 -2.57 -18.78 16 16 C 0.12 2.43 5.43 86.38 0.47 2.90 16 17 C -0.11 -1.46 4.80 30.59 0.15 -1.31 16 18 C -0.08 -1.00 2.19 -10.79 -0.02 -1.03 16 19 C -0.12 -1.68 4.96 30.59 0.15 -1.53 16 20 C -0.12 -1.57 5.92 30.60 0.18 -1.39 16 21 C -0.12 -1.29 5.92 30.60 0.18 -1.11 16 22 C -0.12 -1.21 5.92 30.58 0.18 -1.03 16 23 C -0.11 -1.12 5.20 30.58 0.16 -0.96 16 24 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.05 2.56 6.76 -2.39 -0.02 2.54 16 26 H 0.07 3.06 5.88 -2.38 -0.01 3.05 16 27 H -0.03 -1.58 8.12 -2.39 -0.02 -1.60 16 28 H 0.01 0.79 7.93 -2.39 -0.02 0.77 16 29 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.07 2.25 8.12 -2.38 -0.02 2.23 16 31 H 0.11 3.53 7.93 -2.39 -0.02 3.51 16 32 H 0.42 6.49 8.47 -92.71 -0.79 5.70 16 33 H 0.05 1.27 6.57 -2.39 -0.02 1.26 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.18 16 35 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.90 6.57 -2.39 -0.02 0.88 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -71.01 365.28 0.46 -70.56 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.13 Total: 10.97 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 4.81 Total: -1.30 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -6.47 Total: -103.94 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.73 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -71.01 0.46 -70.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177190332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.049 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds