Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47538 * 2 1 4 4 C 1.46500 * 119.99792 * 270.00308 * 3 2 1 5 5 C 1.50704 * 109.46586 * 269.99296 * 4 3 2 6 6 H 1.07998 * 120.00266 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99726 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46912 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47485 * 119.99813 * 9 7 5 12 12 H 1.48496 * 109.47139 * 239.99977 * 9 7 5 13 13 C 1.34773 * 119.99911 * 89.99214 * 3 2 1 14 14 O 1.21283 * 119.99957 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00421 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47448 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00068 * 293.95614 * 16 15 13 18 18 C 1.46901 * 110.99960 * 169.99664 * 16 15 13 19 19 H 1.09002 * 109.47401 * 310.00169 * 18 16 15 20 20 C 1.53000 * 109.46769 * 70.00462 * 18 16 15 21 21 C 1.53002 * 109.46860 * 190.00222 * 18 16 15 22 22 C 1.53000 * 115.55216 * 34.33405 * 21 18 16 23 23 C 1.52998 * 117.49791 * 248.62135 * 21 18 16 24 24 C 1.52995 * 60.00236 * 252.51771 * 23 21 18 25 25 H 1.09005 * 109.46380 * 60.00358 * 1 2 3 26 26 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47025 * 300.00547 * 1 2 3 28 28 H 1.09000 * 109.47536 * 239.99567 * 2 1 3 29 29 H 1.09005 * 109.47050 * 119.99982 * 2 1 3 30 30 H 1.09000 * 109.47490 * 29.99168 * 4 3 2 31 31 H 1.09002 * 109.46988 * 149.99920 * 4 3 2 32 32 H 0.97006 * 119.99686 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47195 * 59.99106 * 15 13 3 34 34 H 1.08998 * 109.46705 * 299.99577 * 15 13 3 35 35 H 1.08998 * 109.46919 * 296.04338 * 17 16 15 36 36 H 1.08996 * 109.47115 * 56.04331 * 17 16 15 37 37 H 1.09004 * 109.47181 * 176.04500 * 17 16 15 38 38 H 1.09001 * 109.47194 * 299.99524 * 20 18 16 39 39 H 1.08992 * 109.47399 * 59.99697 * 20 18 16 40 40 H 1.09004 * 109.46724 * 180.02562 * 20 18 16 41 41 H 1.08998 * 109.46860 * 59.99652 * 22 21 18 42 42 H 1.09000 * 109.46623 * 180.02562 * 22 21 18 43 43 H 1.09002 * 109.46746 * 299.99477 * 22 21 18 44 44 H 1.09005 * 117.50044 * 0.02562 * 23 21 18 45 45 H 1.08999 * 117.50208 * 145.01816 * 23 21 18 46 46 H 1.09008 * 117.49359 * 252.51162 * 24 23 21 47 47 H 1.08994 * 117.50629 * 107.49153 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1496 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6176 9 14 5.9136 2.0962 -3.4169 10 1 6.6009 1.2402 -2.4168 11 1 5.9207 1.4180 -4.7379 12 1 6.6217 3.3970 -3.5245 13 6 2.2429 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.3107 2.2059 3.5889 17 6 3.7474 2.5096 3.6268 18 6 1.8583 1.6399 4.8667 19 1 0.8186 1.3252 4.7770 20 6 2.7273 0.4330 5.2260 21 6 1.9776 2.6991 5.9644 22 6 1.7073 4.1392 5.5239 23 6 3.0351 2.4779 7.0476 24 6 1.5520 2.3013 7.3791 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0957 3.1410 -1.1384 32 1 3.6757 3.5168 -4.4435 33 1 2.6225 0.4187 2.5300 34 1 0.9442 1.0117 2.5301 35 1 4.3071 1.5948 3.8215 36 1 4.0559 2.9273 2.6684 37 1 3.9453 3.2321 4.4186 38 1 2.6423 -0.3216 4.4440 39 1 3.7669 0.7477 5.3158 40 1 2.3913 0.0127 6.1740 41 1 0.6926 4.2152 5.1331 42 1 1.8192 4.8073 6.3779 43 1 2.4181 4.4210 4.7471 44 1 3.6462 1.5779 6.9781 45 1 3.5388 3.3583 7.4467 46 1 1.0798 3.0657 7.9963 47 1 1.1870 1.2851 7.5279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177238550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = 0.015927 kcal Electronic energy + Delta-G solvation = -23630.928373 eV Core-core repulsion = 20429.094948 eV Total energy + Delta-G solvation = -3201.833424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93173 -38.70369 -35.93245 -35.02865 -32.77457 -30.24371 -29.97209 -29.01157 -28.03522 -26.63370 -25.19353 -23.04037 -22.79153 -22.48442 -21.34180 -18.41783 -18.14805 -16.75150 -16.35274 -15.96021 -15.47867 -15.08876 -15.00830 -14.43822 -14.26049 -13.79981 -13.52676 -13.28275 -13.21835 -12.86309 -12.54136 -12.33290 -12.20655 -11.98143 -11.82333 -11.65629 -11.58644 -11.39746 -11.31918 -11.20810 -11.06253 -10.85903 -10.81395 -10.65255 -10.51351 -10.17924 -10.08093 -9.63040 -9.57743 -8.80136 -8.41429 -7.98923 -7.58273 -6.01880 -4.06383 3.30497 3.37943 3.41135 3.53072 3.57437 3.82164 4.28497 4.47482 4.59763 4.81452 4.84790 5.00933 5.09236 5.16204 5.25835 5.31295 5.33965 5.42789 5.51298 5.54115 5.60343 5.66813 5.69557 5.72790 5.80467 5.83436 5.86309 5.94936 6.02088 6.04931 6.06158 6.14762 6.21830 6.25876 6.46292 6.51080 6.58244 7.04476 7.22593 7.30897 7.50842 7.62140 7.95522 8.27275 8.51020 8.94574 9.20948 9.58925 11.06078 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004170 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.724061 B = 6713.116459 C = 7233.313797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.036 3.964 16 N -0.509 5.509 17 C 0.016 3.984 18 C 0.117 3.883 19 H 0.082 0.918 20 C -0.191 4.191 21 C -0.107 4.107 22 C -0.104 4.104 23 C -0.184 4.184 24 C -0.176 4.176 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.019 0.981 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 -6.708 18.466 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.095 4.095 16 N -0.232 5.232 17 C -0.132 4.132 18 C 0.008 3.992 19 H 0.100 0.900 20 C -0.250 4.250 21 C -0.108 4.108 22 C -0.161 4.161 23 C -0.221 4.221 24 C -0.214 4.214 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.850 -5.530 18.180 19.612 hybrid contribution 1.364 -1.117 -0.244 1.780 sum -3.486 -6.647 17.936 19.443 Atomic orbital electron populations 1.22224 0.96855 1.01283 1.02375 1.21385 0.93476 0.84428 1.02431 1.48254 1.64236 1.13125 1.07720 1.19235 0.96091 0.93672 0.78155 1.21478 0.96986 1.31638 1.06169 0.92555 1.24933 0.97753 0.94986 0.96446 1.69949 1.35528 1.33565 1.14326 0.86468 0.84785 0.78029 0.78277 1.19884 1.21007 1.20892 1.20126 0.78793 0.87077 0.84698 1.90632 1.44817 1.17725 1.86783 1.22083 1.01993 0.94441 0.91011 1.61818 1.17792 1.42768 1.00806 1.22627 0.86544 0.99455 1.04572 1.21162 0.98785 0.90994 0.88232 0.89971 1.22614 1.01667 0.98953 1.01728 1.21441 1.03467 0.97032 0.88825 1.21204 1.02792 0.91524 1.00581 1.23229 0.91998 1.03284 1.03614 1.23025 0.97774 1.02209 0.98359 0.92017 0.92301 0.93049 0.90072 0.92063 0.95168 0.93893 0.92824 0.92682 0.88876 0.96220 0.89046 0.91406 0.92529 0.91484 0.92178 0.92231 0.93842 0.90652 0.88530 0.89179 0.88993 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.65 2.46 -175.06 -0.43 -13.08 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.47 16 5 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.51 10.54 7.36 -10.99 -0.08 10.46 16 14 O -0.52 -13.11 13.91 5.55 0.08 -13.03 16 15 C 0.04 0.55 3.57 -4.98 -0.02 0.53 16 16 N -0.51 -7.51 3.60 -236.33 -0.85 -8.36 16 17 C 0.02 0.24 7.99 60.06 0.48 0.72 16 18 C 0.12 1.35 2.57 -67.71 -0.17 1.18 16 19 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 20 C -0.19 -1.92 7.04 37.16 0.26 -1.66 16 21 C -0.11 -1.16 1.59 -154.51 -0.25 -1.40 16 22 C -0.10 -1.24 9.05 37.16 0.34 -0.90 16 23 C -0.18 -1.75 9.25 -26.73 -0.25 -2.00 16 24 C -0.18 -1.58 9.61 -26.73 -0.26 -1.83 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 29 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 34 H 0.09 1.24 6.98 -51.93 -0.36 0.88 16 35 H 0.02 0.28 6.21 -51.93 -0.32 -0.05 16 36 H 0.09 1.76 5.82 -51.93 -0.30 1.46 16 37 H 0.07 0.96 6.10 -51.93 -0.32 0.64 16 38 H 0.06 0.57 6.91 -51.93 -0.36 0.21 16 39 H 0.07 0.71 5.16 -51.93 -0.27 0.44 16 40 H 0.06 0.52 7.08 -51.93 -0.37 0.15 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.45 8.11 -51.93 -0.42 0.03 16 43 H 0.07 1.05 6.13 -51.93 -0.32 0.73 16 44 H 0.10 0.88 5.85 -51.93 -0.30 0.58 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.09 0.74 7.61 -51.93 -0.40 0.34 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -31.90 358.59 -8.19 -40.09 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.07 Total: 0.23 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.04 Total: -2.19 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.54 Total: -47.44 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.90 -8.19 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177238550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.106 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds