Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47538 * 2 1 4 4 C 1.46500 * 119.99792 * 270.00308 * 3 2 1 5 5 C 1.50704 * 109.46586 * 269.99296 * 4 3 2 6 6 H 1.07998 * 120.00266 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99726 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46912 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47485 * 119.99813 * 9 7 5 12 12 H 1.48496 * 109.47139 * 239.99977 * 9 7 5 13 13 C 1.34773 * 119.99911 * 89.99214 * 3 2 1 14 14 O 1.21283 * 119.99957 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00421 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47448 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00068 * 293.95614 * 16 15 13 18 18 C 1.46901 * 110.99960 * 169.99664 * 16 15 13 19 19 H 1.09002 * 109.47401 * 310.00169 * 18 16 15 20 20 C 1.53000 * 109.46769 * 70.00462 * 18 16 15 21 21 C 1.53002 * 109.46860 * 190.00222 * 18 16 15 22 22 C 1.53000 * 115.55216 * 34.33405 * 21 18 16 23 23 C 1.52998 * 117.49791 * 248.62135 * 21 18 16 24 24 C 1.52995 * 60.00236 * 252.51771 * 23 21 18 25 25 H 1.09005 * 109.46380 * 60.00358 * 1 2 3 26 26 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47025 * 300.00547 * 1 2 3 28 28 H 1.09000 * 109.47536 * 239.99567 * 2 1 3 29 29 H 1.09005 * 109.47050 * 119.99982 * 2 1 3 30 30 H 1.09000 * 109.47490 * 29.99168 * 4 3 2 31 31 H 1.09002 * 109.46988 * 149.99920 * 4 3 2 32 32 H 0.97006 * 119.99686 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47195 * 59.99106 * 15 13 3 34 34 H 1.08998 * 109.46705 * 299.99577 * 15 13 3 35 35 H 1.08998 * 109.46919 * 296.04338 * 17 16 15 36 36 H 1.08996 * 109.47115 * 56.04331 * 17 16 15 37 37 H 1.09004 * 109.47181 * 176.04500 * 17 16 15 38 38 H 1.09001 * 109.47194 * 299.99524 * 20 18 16 39 39 H 1.08992 * 109.47399 * 59.99697 * 20 18 16 40 40 H 1.09004 * 109.46724 * 180.02562 * 20 18 16 41 41 H 1.08998 * 109.46860 * 59.99652 * 22 21 18 42 42 H 1.09000 * 109.46623 * 180.02562 * 22 21 18 43 43 H 1.09002 * 109.46746 * 299.99477 * 22 21 18 44 44 H 1.09005 * 117.50044 * 0.02562 * 23 21 18 45 45 H 1.08999 * 117.50208 * 145.01816 * 23 21 18 46 46 H 1.09008 * 117.49359 * 252.51162 * 24 23 21 47 47 H 1.08994 * 117.50629 * 107.49153 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1496 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6176 9 14 5.9136 2.0962 -3.4169 10 1 6.6009 1.2402 -2.4168 11 1 5.9207 1.4180 -4.7379 12 1 6.6217 3.3970 -3.5245 13 6 2.2429 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.3107 2.2059 3.5889 17 6 3.7474 2.5096 3.6268 18 6 1.8583 1.6399 4.8667 19 1 0.8186 1.3252 4.7770 20 6 2.7273 0.4330 5.2260 21 6 1.9776 2.6991 5.9644 22 6 1.7073 4.1392 5.5239 23 6 3.0351 2.4779 7.0476 24 6 1.5520 2.3013 7.3791 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0957 3.1410 -1.1384 32 1 3.6757 3.5168 -4.4435 33 1 2.6225 0.4187 2.5300 34 1 0.9442 1.0117 2.5301 35 1 4.3071 1.5948 3.8215 36 1 4.0559 2.9273 2.6684 37 1 3.9453 3.2321 4.4186 38 1 2.6423 -0.3216 4.4440 39 1 3.7669 0.7477 5.3158 40 1 2.3913 0.0127 6.1740 41 1 0.6926 4.2152 5.1331 42 1 1.8192 4.8073 6.3779 43 1 2.4181 4.4210 4.7471 44 1 3.6462 1.5779 6.9781 45 1 3.5388 3.3583 7.4467 46 1 1.0798 3.0657 7.9963 47 1 1.1870 1.2851 7.5279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177238550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = -19.684881 kcal Electronic energy + Delta-G solvation = -23631.782664 eV Core-core repulsion = 20429.094948 eV Total energy + Delta-G solvation = -3202.687716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13892 -40.00275 -37.18263 -36.51872 -34.89211 -31.67979 -31.06420 -30.20157 -29.24021 -28.29815 -26.38467 -24.81072 -24.09551 -23.23352 -22.54735 -19.79041 -19.25969 -18.61106 -18.00386 -17.30179 -16.64077 -16.56654 -16.31761 -15.99103 -15.49432 -14.92403 -14.80210 -14.62522 -14.38975 -14.22739 -13.93155 -13.58713 -13.48667 -13.26965 -13.10254 -13.03329 -12.77264 -12.66993 -12.56896 -12.48673 -12.41568 -12.38679 -12.14115 -12.09243 -11.81930 -11.67043 -11.62445 -11.00799 -10.64732 -10.47605 -10.37807 -9.37692 -9.11732 -8.21675 -6.36648 1.35141 1.37763 1.49306 1.92232 2.24947 2.41285 2.89427 3.07373 3.12945 3.75715 3.79235 4.02244 4.06730 4.10125 4.18259 4.27276 4.33676 4.34597 4.44796 4.51357 4.56831 4.62959 4.69560 4.78644 4.89050 4.92900 4.96008 5.00402 5.01740 5.05862 5.07315 5.17228 5.22051 5.24507 5.27656 5.34575 5.38574 5.40795 5.55582 5.60169 5.89178 6.03940 6.08762 6.25629 6.72356 6.88157 7.30168 7.59438 8.85313 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004170 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.724061 B = 6713.116459 C = 7233.313797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.052 3.948 16 N -0.527 5.527 17 C 0.028 3.972 18 C 0.119 3.881 19 H 0.091 0.909 20 C -0.185 4.185 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.182 4.182 24 C -0.158 4.158 25 H 0.036 0.964 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.019 0.981 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -9.378 20.700 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.078 4.078 16 N -0.251 5.251 17 C -0.120 4.120 18 C 0.011 3.989 19 H 0.109 0.891 20 C -0.244 4.244 21 C -0.127 4.127 22 C -0.157 4.157 23 C -0.219 4.219 24 C -0.195 4.195 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.849 -8.252 20.439 22.569 hybrid contribution 1.303 -0.239 -0.907 1.606 sum -3.546 -8.491 19.531 21.590 Atomic orbital electron populations 1.22151 0.94590 1.03452 1.01645 1.21719 0.95310 0.81470 1.03689 1.48288 1.64396 1.15036 1.06182 1.18641 0.95138 0.91392 0.80499 1.21735 0.97884 1.31747 1.06433 0.92984 1.25863 1.02354 0.94510 0.96473 1.70069 1.37685 1.34332 1.14820 0.85372 0.79064 0.77976 0.78411 1.19116 1.19368 1.20834 1.21209 0.77351 0.86714 0.86275 1.90610 1.47078 1.20392 1.87716 1.21972 1.03973 0.94048 0.87847 1.61731 1.17271 1.43790 1.02272 1.22394 0.87469 0.99998 1.02132 1.21237 0.99416 0.91732 0.86506 0.89088 1.22558 1.00857 0.98077 1.02888 1.21386 1.05722 0.95929 0.89683 1.21110 1.01275 0.93160 1.00145 1.23277 0.92471 1.03604 1.02521 1.23096 0.97126 1.03167 0.96134 0.94441 0.88578 0.92118 0.91141 0.88427 0.96278 0.98832 0.92466 0.90537 0.86084 0.94772 0.93632 0.90755 0.92195 0.92135 0.90160 0.93245 0.92643 0.93492 0.87832 0.89210 0.88361 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.23 16 2 C 0.10 3.07 5.93 86.38 0.51 3.58 16 3 N -0.61 -26.11 2.46 -826.14 -2.03 -28.14 16 4 C 0.26 14.64 5.16 85.63 0.44 15.09 16 5 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.39 5.46 84.65 0.46 0.86 16 8 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 9 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 C 0.50 21.05 7.36 87.66 0.65 21.70 16 14 O -0.58 -30.71 13.91 -3.04 -0.04 -30.75 16 15 C 0.05 1.51 3.57 85.56 0.31 1.81 16 16 N -0.53 -15.08 3.60 -901.62 -3.25 -18.32 16 17 C 0.03 0.87 7.99 127.69 1.02 1.89 16 18 C 0.12 2.43 2.57 44.92 0.12 2.54 16 19 H 0.09 1.71 7.93 -2.39 -0.02 1.69 16 20 C -0.19 -3.03 7.04 71.98 0.51 -2.53 16 21 C -0.13 -2.47 1.59 -52.18 -0.08 -2.55 16 22 C -0.10 -2.35 9.05 71.98 0.65 -1.69 16 23 C -0.18 -2.97 9.25 30.59 0.28 -2.69 16 24 C -0.16 -2.29 9.61 30.59 0.29 -2.00 16 25 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 28 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 29 H 0.10 2.28 6.44 -2.38 -0.02 2.26 16 30 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 31 H -0.01 -0.42 7.42 -2.39 -0.02 -0.43 16 32 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 33 H 0.08 1.91 6.32 -2.39 -0.02 1.90 16 34 H 0.12 2.83 6.98 -2.39 -0.02 2.81 16 35 H 0.03 0.93 6.21 -2.39 -0.01 0.91 16 36 H 0.04 1.84 5.82 -2.39 -0.01 1.83 16 37 H 0.07 2.13 6.10 -2.39 -0.01 2.12 16 38 H 0.06 0.95 6.91 -2.39 -0.02 0.94 16 39 H 0.06 1.08 5.16 -2.39 -0.01 1.07 16 40 H 0.08 1.01 7.08 -2.39 -0.02 1.00 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 1.12 8.11 -2.39 -0.02 1.10 16 43 H 0.05 1.36 6.13 -2.39 -0.01 1.34 16 44 H 0.10 1.56 5.85 -2.38 -0.01 1.55 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.10 1.32 8.14 -2.38 -0.02 1.31 16 47 H 0.11 1.24 7.61 -2.39 -0.02 1.23 16 Total: -1.00 -74.17 358.59 4.06 -70.11 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.94 Total: 15.07 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.13 Total: 1.36 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -4.99 Total: -103.43 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.04 Total: -30.75 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.17 4.06 -70.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177238550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.426 kcal (2) G-P(sol) polarization free energy of solvation -74.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds