Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47082 * 2 1 4 4 C 1.46493 * 120.00712 * 270.00316 * 3 2 1 5 5 C 1.50704 * 109.46956 * 270.00028 * 4 3 2 6 6 H 1.08004 * 120.00254 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99751 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46913 * 89.99709 * 9 7 5 11 11 H 1.48503 * 109.46836 * 209.99871 * 9 7 5 12 12 H 1.48497 * 109.47156 * 329.99664 * 9 7 5 13 13 C 1.34783 * 119.99288 * 90.00510 * 3 2 1 14 14 O 1.21280 * 119.99810 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00231 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47311 * 180.02562 * 15 13 3 17 17 C 1.46904 * 110.99781 * 66.04797 * 16 15 13 18 18 C 1.46895 * 111.00401 * 190.00491 * 16 15 13 19 19 H 1.08999 * 109.47003 * 302.12423 * 18 16 15 20 20 C 1.53000 * 109.47428 * 182.12308 * 18 16 15 21 21 C 1.52998 * 109.47402 * 62.11958 * 18 16 15 22 22 C 1.53003 * 115.54557 * 54.46895 * 21 18 16 23 23 C 1.53002 * 117.50002 * 268.80419 * 21 18 16 24 24 C 1.52998 * 117.50063 * 200.14035 * 21 18 16 25 25 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47051 * 299.99909 * 1 2 3 27 27 H 1.09003 * 109.47031 * 59.99127 * 1 2 3 28 28 H 1.09005 * 109.46687 * 240.00571 * 2 1 3 29 29 H 1.08994 * 109.46872 * 120.00711 * 2 1 3 30 30 H 1.08997 * 109.47070 * 29.99631 * 4 3 2 31 31 H 1.08999 * 109.47459 * 150.00353 * 4 3 2 32 32 H 0.97001 * 119.99931 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46998 * 60.00700 * 15 13 3 34 34 H 1.08997 * 109.47484 * 300.00300 * 15 13 3 35 35 H 1.09001 * 109.46998 * 190.94251 * 17 16 15 36 36 H 1.08998 * 109.47196 * 310.93749 * 17 16 15 37 37 H 1.08995 * 109.46600 * 70.93843 * 17 16 15 38 38 H 1.08999 * 109.47123 * 300.00042 * 20 18 16 39 39 H 1.09003 * 109.46739 * 59.99748 * 20 18 16 40 40 H 1.08994 * 109.47121 * 179.97438 * 20 18 16 41 41 H 1.08997 * 109.47273 * 65.18009 * 22 21 18 42 42 H 1.09008 * 109.47033 * 185.17782 * 22 21 18 43 43 H 1.09003 * 109.47100 * 305.17319 * 22 21 18 44 44 H 1.08993 * 117.50007 * 359.97438 * 23 21 18 45 45 H 1.09002 * 117.49823 * 145.02332 * 23 21 18 46 46 H 1.09001 * 117.49472 * 214.98191 * 24 21 18 47 47 H 1.08998 * 117.50124 * 359.97430 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 3.6858 1.8352 -1.7036 6 1 4.3427 1.2303 -1.0961 7 6 4.1491 2.3899 -2.8778 8 7 5.3911 2.1829 -3.2577 9 14 3.0128 3.4356 -3.9289 10 1 3.1163 4.8558 -3.5076 11 1 3.4058 3.3125 -5.3557 12 1 1.6131 2.9696 -3.7590 13 6 2.2431 2.0164 1.1673 14 8 2.6469 3.1600 1.1675 15 6 1.9914 1.3061 2.4723 16 7 2.3092 2.2061 3.5890 17 6 1.3826 3.3454 3.6270 18 6 2.3052 1.4815 4.8668 19 1 1.3306 1.0175 5.0183 20 6 2.5874 2.4598 6.0088 21 6 3.3869 0.3997 4.8431 22 6 4.7982 0.8850 4.5060 23 6 2.9829 -0.9926 4.3538 24 6 3.2555 -0.7527 5.8409 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.5818 1.6879 -2.0283 31 1 2.0956 3.1412 -1.1381 32 1 5.7172 2.5735 -4.0836 33 1 2.6214 0.4184 2.5302 34 1 0.9434 1.0122 2.5299 35 1 1.7513 4.0903 4.3321 36 1 1.3114 3.7891 2.6339 37 1 0.3976 3.0021 3.9430 38 1 3.5620 2.9238 5.8573 39 1 1.8167 3.2305 6.0257 40 1 2.5840 1.9222 6.9570 41 1 5.1516 1.5499 5.2941 42 1 5.4676 0.0284 4.4260 43 1 4.7809 1.4223 3.5578 44 1 1.9466 -1.1379 4.0492 45 1 3.7228 -1.5630 3.7922 46 1 4.1746 -1.1653 6.2569 47 1 2.3988 -0.7399 6.5146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177238566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = -0.439556 kcal Electronic energy + Delta-G solvation = -23935.919281 eV Core-core repulsion = 20734.066105 eV Total energy + Delta-G solvation = -3201.853176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86681 -38.59270 -35.96999 -35.08752 -32.69908 -31.04084 -30.25678 -28.66857 -28.07372 -26.98313 -25.12576 -22.95649 -22.48452 -22.33448 -21.41609 -18.64559 -18.23667 -16.88596 -16.54130 -15.84517 -15.78379 -15.35808 -14.71375 -14.40328 -14.18609 -13.90905 -13.46567 -13.26343 -13.04864 -12.84225 -12.48492 -12.45678 -12.24019 -12.10915 -11.95998 -11.87153 -11.74416 -11.63491 -11.45374 -11.39541 -11.16919 -10.92471 -10.74276 -10.65730 -10.46261 -10.12988 -10.06160 -9.65151 -9.48323 -8.87040 -8.54783 -8.08335 -7.63616 -6.04520 -4.02596 3.31410 3.37157 3.39210 3.42625 3.53338 3.78759 4.21405 4.43038 4.58233 4.76045 4.86247 5.02065 5.05758 5.23220 5.26725 5.29784 5.32287 5.42431 5.52181 5.54077 5.57531 5.63332 5.72458 5.74840 5.78969 5.81015 5.83013 5.95415 5.98814 5.99539 6.04142 6.15817 6.17778 6.22131 6.35659 6.40141 6.55264 6.73793 6.97374 7.14659 7.26034 7.43449 7.66156 8.33919 8.52323 8.99071 9.10223 9.56253 11.09033 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.004661 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.534538 B = 6005.634442 C = 6055.386548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.523 6.523 15 C 0.035 3.965 16 N -0.513 5.513 17 C 0.021 3.979 18 C 0.120 3.880 19 H 0.036 0.964 20 C -0.143 4.143 21 C -0.112 4.112 22 C -0.109 4.109 23 C -0.183 4.183 24 C -0.173 4.173 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.014 0.986 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -6.256 16.879 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.097 3.903 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.096 4.096 16 N -0.237 5.237 17 C -0.127 4.127 18 C 0.012 3.988 19 H 0.054 0.946 20 C -0.201 4.201 21 C -0.112 4.112 22 C -0.166 4.166 23 C -0.219 4.219 24 C -0.211 4.211 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.032 0.968 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.834 -5.395 16.636 19.593 hybrid contribution -1.303 0.004 -0.579 1.426 sum -10.137 -5.391 16.057 19.740 Atomic orbital electron populations 1.22235 0.96963 1.01480 1.02086 1.21412 0.93223 0.84097 1.03000 1.47939 1.64589 1.13323 1.07000 1.19607 0.97232 0.93301 0.80136 1.21344 0.95364 1.32697 1.06971 0.90757 1.24855 0.94964 0.95831 0.97366 1.69905 1.15138 1.45114 1.23561 0.86860 0.81463 0.81656 0.79747 1.19948 1.21142 1.19154 1.20208 0.78411 0.87080 0.84743 1.90635 1.44517 1.17955 1.86805 1.22138 1.00100 0.96853 0.90495 1.61565 1.52102 1.08763 1.01248 1.22547 0.92073 0.93637 1.04406 1.21117 0.95035 0.92926 0.89712 0.94623 1.21840 1.02857 0.98794 0.96565 1.21461 0.97398 0.88733 1.03642 1.21233 0.91854 1.00583 1.02918 1.23160 1.02221 0.99477 0.97092 1.23018 1.02973 1.02683 0.92411 0.92037 0.93217 0.92219 0.89758 0.91585 0.95447 0.94724 0.92643 0.87667 0.93156 0.91314 0.89413 0.96795 0.91313 0.92484 0.92374 0.92479 0.93268 0.90439 0.89118 0.88495 0.88786 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.28 2.46 -175.06 -0.43 -12.71 16 4 C 0.22 5.37 4.23 -5.20 -0.02 5.35 16 5 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 6 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.51 10.47 7.29 -10.98 -0.08 10.39 16 14 O -0.52 -12.90 13.98 5.56 0.08 -12.82 16 15 C 0.04 0.54 3.73 -4.98 -0.02 0.52 16 16 N -0.51 -7.65 3.79 -236.34 -0.89 -8.55 16 17 C 0.02 0.30 8.48 60.07 0.51 0.81 16 18 C 0.12 1.43 1.93 -67.72 -0.13 1.29 16 19 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 20 C -0.14 -1.49 8.61 37.16 0.32 -1.17 16 21 C -0.11 -1.27 1.01 -154.51 -0.16 -1.42 16 22 C -0.11 -1.38 9.22 37.16 0.34 -1.04 16 23 C -0.18 -1.88 8.01 -26.69 -0.21 -2.09 16 24 C -0.17 -1.61 9.98 -26.69 -0.27 -1.87 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 29 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 30 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 31 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.11 1.55 4.70 -51.93 -0.24 1.31 16 34 H 0.05 0.69 7.16 -51.93 -0.37 0.31 16 35 H 0.07 0.91 6.65 -51.93 -0.35 0.56 16 36 H 0.09 1.52 5.78 -51.93 -0.30 1.22 16 37 H 0.01 0.17 8.11 -51.93 -0.42 -0.25 16 38 H 0.07 0.78 7.24 -51.93 -0.38 0.41 16 39 H 0.06 0.57 6.48 -51.93 -0.34 0.23 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.67 7.41 -51.93 -0.38 0.29 16 42 H 0.05 0.58 8.09 -51.92 -0.42 0.16 16 43 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 44 H 0.09 0.88 8.13 -51.93 -0.42 0.46 16 45 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -33.25 363.00 -7.90 -41.15 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.43 Total: 0.45 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 0.20 Total: -2.91 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.55 Total: -48.47 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.25 -7.90 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177238566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.706 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds