Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47082 * 2 1 4 4 C 1.46493 * 120.00712 * 270.00316 * 3 2 1 5 5 C 1.50704 * 109.46956 * 270.00028 * 4 3 2 6 6 H 1.08004 * 120.00254 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99751 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46913 * 89.99709 * 9 7 5 11 11 H 1.48503 * 109.46836 * 209.99871 * 9 7 5 12 12 H 1.48497 * 109.47156 * 329.99664 * 9 7 5 13 13 C 1.34783 * 119.99288 * 90.00510 * 3 2 1 14 14 O 1.21280 * 119.99810 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00231 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47311 * 180.02562 * 15 13 3 17 17 C 1.46904 * 110.99781 * 66.04797 * 16 15 13 18 18 C 1.46895 * 111.00401 * 190.00491 * 16 15 13 19 19 H 1.08999 * 109.47003 * 302.12423 * 18 16 15 20 20 C 1.53000 * 109.47428 * 182.12308 * 18 16 15 21 21 C 1.52998 * 109.47402 * 62.11958 * 18 16 15 22 22 C 1.53003 * 115.54557 * 54.46895 * 21 18 16 23 23 C 1.53002 * 117.50002 * 268.80419 * 21 18 16 24 24 C 1.52998 * 117.50063 * 200.14035 * 21 18 16 25 25 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47051 * 299.99909 * 1 2 3 27 27 H 1.09003 * 109.47031 * 59.99127 * 1 2 3 28 28 H 1.09005 * 109.46687 * 240.00571 * 2 1 3 29 29 H 1.08994 * 109.46872 * 120.00711 * 2 1 3 30 30 H 1.08997 * 109.47070 * 29.99631 * 4 3 2 31 31 H 1.08999 * 109.47459 * 150.00353 * 4 3 2 32 32 H 0.97001 * 119.99931 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46998 * 60.00700 * 15 13 3 34 34 H 1.08997 * 109.47484 * 300.00300 * 15 13 3 35 35 H 1.09001 * 109.46998 * 190.94251 * 17 16 15 36 36 H 1.08998 * 109.47196 * 310.93749 * 17 16 15 37 37 H 1.08995 * 109.46600 * 70.93843 * 17 16 15 38 38 H 1.08999 * 109.47123 * 300.00042 * 20 18 16 39 39 H 1.09003 * 109.46739 * 59.99748 * 20 18 16 40 40 H 1.08994 * 109.47121 * 179.97438 * 20 18 16 41 41 H 1.08997 * 109.47273 * 65.18009 * 22 21 18 42 42 H 1.09008 * 109.47033 * 185.17782 * 22 21 18 43 43 H 1.09003 * 109.47100 * 305.17319 * 22 21 18 44 44 H 1.08993 * 117.50007 * 359.97438 * 23 21 18 45 45 H 1.09002 * 117.49823 * 145.02332 * 23 21 18 46 46 H 1.09001 * 117.49472 * 214.98191 * 24 21 18 47 47 H 1.08998 * 117.50124 * 359.97430 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 3.6858 1.8352 -1.7036 6 1 4.3427 1.2303 -1.0961 7 6 4.1491 2.3899 -2.8778 8 7 5.3911 2.1829 -3.2577 9 14 3.0128 3.4356 -3.9289 10 1 3.1163 4.8558 -3.5076 11 1 3.4058 3.3125 -5.3557 12 1 1.6131 2.9696 -3.7590 13 6 2.2431 2.0164 1.1673 14 8 2.6469 3.1600 1.1675 15 6 1.9914 1.3061 2.4723 16 7 2.3092 2.2061 3.5890 17 6 1.3826 3.3454 3.6270 18 6 2.3052 1.4815 4.8668 19 1 1.3306 1.0175 5.0183 20 6 2.5874 2.4598 6.0088 21 6 3.3869 0.3997 4.8431 22 6 4.7982 0.8850 4.5060 23 6 2.9829 -0.9926 4.3538 24 6 3.2555 -0.7527 5.8409 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.5818 1.6879 -2.0283 31 1 2.0956 3.1412 -1.1381 32 1 5.7172 2.5735 -4.0836 33 1 2.6214 0.4184 2.5302 34 1 0.9434 1.0122 2.5299 35 1 1.7513 4.0903 4.3321 36 1 1.3114 3.7891 2.6339 37 1 0.3976 3.0021 3.9430 38 1 3.5620 2.9238 5.8573 39 1 1.8167 3.2305 6.0257 40 1 2.5840 1.9222 6.9570 41 1 5.1516 1.5499 5.2941 42 1 5.4676 0.0284 4.4260 43 1 4.7809 1.4223 3.5578 44 1 1.9466 -1.1379 4.0492 45 1 3.7228 -1.5630 3.7922 46 1 4.1746 -1.1653 6.2569 47 1 2.3988 -0.7399 6.5146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177238566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = -22.062153 kcal Electronic energy + Delta-G solvation = -23936.856907 eV Core-core repulsion = 20734.066105 eV Total energy + Delta-G solvation = -3202.790802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15090 -39.82171 -37.22987 -36.49436 -34.85126 -32.27445 -31.62386 -30.04910 -29.23332 -28.37717 -26.37755 -24.41628 -23.86547 -23.23691 -22.61514 -19.81373 -19.57159 -19.09018 -17.93507 -17.25598 -16.92688 -16.55768 -16.30964 -15.71882 -15.43359 -15.25303 -14.73468 -14.68137 -14.43299 -14.11422 -13.92640 -13.72950 -13.46595 -13.39548 -13.17979 -13.10821 -12.83321 -12.81799 -12.62214 -12.52312 -12.44329 -12.34175 -12.23115 -12.00895 -11.86505 -11.72856 -11.64533 -10.95829 -10.82705 -10.49485 -10.47427 -9.39106 -9.13888 -8.33441 -6.37999 1.31387 1.35951 1.44128 1.85676 2.22669 2.30931 2.78462 3.00877 3.14514 3.67471 3.77645 3.91742 4.01838 4.08027 4.15561 4.22336 4.36198 4.41648 4.44102 4.48634 4.60135 4.63472 4.65538 4.80466 4.82826 4.87248 4.91081 4.92871 4.98635 5.00178 5.01481 5.04186 5.10242 5.13973 5.26613 5.32127 5.36688 5.39494 5.47430 5.48658 5.68677 6.02674 6.24271 6.27195 6.63263 6.77399 7.23101 7.51126 8.83797 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.004661 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.534538 B = 6005.634442 C = 6055.386548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.228 3.772 5 C -0.533 4.533 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.498 3.502 14 O -0.575 6.575 15 C 0.053 3.947 16 N -0.538 5.538 17 C 0.027 3.973 18 C 0.123 3.877 19 H 0.053 0.947 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.186 4.186 24 C -0.150 4.150 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 -7.606 18.397 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.572 4.572 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.077 4.077 16 N -0.263 5.263 17 C -0.121 4.121 18 C 0.016 3.984 19 H 0.071 0.929 20 C -0.197 4.197 21 C -0.132 4.132 22 C -0.161 4.161 23 C -0.223 4.223 24 C -0.187 4.187 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.119 0.881 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.762 -6.800 18.180 22.696 hybrid contribution -0.278 0.371 -0.979 1.083 sum -12.040 -6.429 17.201 21.958 Atomic orbital electron populations 1.22147 0.93949 1.03634 1.01946 1.21736 0.95608 0.81318 1.03692 1.48071 1.64577 1.15143 1.05782 1.19240 0.94676 0.92884 0.82639 1.21566 0.97102 1.31934 1.06567 0.95536 1.25849 0.96702 0.97192 0.98950 1.70060 1.17448 1.46664 1.24493 0.85715 0.80456 0.78963 0.77796 1.20303 1.19908 1.16168 1.21216 0.77063 0.86728 0.86291 1.90604 1.46764 1.20422 1.87704 1.21978 1.01776 0.96163 0.87823 1.61502 1.52892 1.09372 1.02496 1.22421 0.93332 0.93783 1.02527 1.21193 0.95885 0.93077 0.88256 0.92937 1.21828 1.02039 0.98850 0.97018 1.21406 0.96147 0.89371 1.06277 1.21123 0.93683 1.00413 1.00856 1.23238 1.02726 0.98205 0.98156 1.23078 1.03901 0.99785 0.91947 0.88660 0.92315 0.93409 0.90984 0.89105 0.93533 0.96635 0.92322 0.86922 0.90254 0.90640 0.92935 0.94409 0.92997 0.92021 0.90249 0.92094 0.92769 0.94568 0.87924 0.89078 0.88134 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.79 16 2 C 0.10 2.95 5.93 86.38 0.51 3.46 16 3 N -0.60 -25.03 2.46 -826.16 -2.03 -27.06 16 4 C 0.23 11.40 4.23 85.64 0.36 11.76 16 5 C -0.53 -32.18 9.94 25.60 0.25 -31.93 16 6 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 7 C 0.01 0.65 5.47 84.65 0.46 1.12 16 8 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 9 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 13 C 0.50 20.83 7.29 87.65 0.64 21.47 16 14 O -0.58 -29.70 13.98 -3.03 -0.04 -29.74 16 15 C 0.05 1.58 3.73 85.56 0.32 1.90 16 16 N -0.54 -15.61 3.79 -901.63 -3.41 -19.02 16 17 C 0.03 0.76 8.48 127.69 1.08 1.84 16 18 C 0.12 2.62 1.93 44.92 0.09 2.71 16 19 H 0.05 0.97 8.09 -2.39 -0.02 0.95 16 20 C -0.14 -2.62 8.61 71.98 0.62 -2.00 16 21 C -0.13 -2.72 1.01 -52.18 -0.05 -2.77 16 22 C -0.10 -2.65 9.22 71.98 0.66 -1.98 16 23 C -0.19 -3.31 8.01 30.62 0.25 -3.07 16 24 C -0.15 -2.26 9.98 30.62 0.31 -1.95 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.21 7.22 -2.39 -0.02 1.20 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 29 H 0.09 2.24 6.44 -2.39 -0.02 2.22 16 30 H 0.05 2.14 7.13 -2.39 -0.02 2.13 16 31 H 0.02 0.84 6.85 -2.39 -0.02 0.82 16 32 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 33 H 0.11 3.17 4.70 -2.38 -0.01 3.16 16 34 H 0.08 1.90 7.16 -2.39 -0.02 1.88 16 35 H 0.07 1.95 6.65 -2.39 -0.02 1.94 16 36 H 0.05 1.86 5.78 -2.39 -0.01 1.85 16 37 H 0.04 0.85 8.11 -2.39 -0.02 0.83 16 38 H 0.05 1.14 7.24 -2.39 -0.02 1.12 16 39 H 0.06 1.09 6.48 -2.39 -0.02 1.07 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.45 7.41 -2.39 -0.02 1.43 16 42 H 0.05 1.27 8.09 -2.38 -0.02 1.25 16 43 H 0.04 1.21 7.75 -2.39 -0.02 1.19 16 44 H 0.10 1.59 8.13 -2.39 -0.02 1.57 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -77.34 363.00 3.80 -73.54 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.86 Total: 17.95 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.24 Total: -2.24 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -5.14 Total: -106.84 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.04 Total: -29.74 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -77.34 3.80 -73.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177238566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.475 kcal (2) G-P(sol) polarization free energy of solvation -77.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds