Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 120.00306 * 2 1 4 4 N 1.34776 * 120.00219 * 179.97438 * 2 1 3 5 5 C 1.47612 * 118.75074 * 175.80470 * 4 2 1 6 6 C 1.53852 * 111.36913 * 138.27998 * 5 4 2 7 7 C 1.51270 * 109.57403 * 320.04977 * 6 5 4 8 8 N 1.46197 * 109.15876 * 92.33909 * 7 6 5 9 9 C 1.46908 * 110.99802 * 144.72445 * 8 7 6 10 10 C 1.53004 * 109.46819 * 215.82714 * 9 8 7 11 11 C 1.52996 * 109.47129 * 294.48076 * 10 9 8 12 12 C 1.52998 * 109.46981 * 54.48094 * 10 9 8 13 13 C 1.52997 * 109.47011 * 174.47948 * 10 9 8 14 14 C 1.50697 * 109.46953 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00237 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99786 * 179.97438 * 14 13 10 17 17 N 1.31521 * 120.00290 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46733 * 90.00131 * 18 16 14 20 20 H 1.48494 * 109.47306 * 210.00132 * 18 16 14 21 21 H 1.48498 * 109.47088 * 330.00358 * 18 16 14 22 22 C 1.41446 * 116.34401 * 272.92210 * 8 7 6 23 23 C 1.44882 * 118.74354 * 355.78473 * 4 2 1 24 24 H 1.09000 * 109.47335 * 185.66373 * 1 2 3 25 25 H 1.08997 * 109.47180 * 305.66724 * 1 2 3 26 26 H 1.09004 * 109.47234 * 65.66614 * 1 2 3 27 27 H 1.08996 * 109.11274 * 258.78788 * 5 4 2 28 28 H 1.08998 * 109.11119 * 17.91109 * 5 4 2 29 29 H 1.08997 * 109.56182 * 199.95567 * 6 5 4 30 30 H 1.09004 * 109.37981 * 80.02326 * 6 5 4 31 31 H 1.09003 * 109.53104 * 332.41327 * 7 6 5 32 32 H 1.09006 * 109.52913 * 212.26106 * 7 6 5 33 33 H 1.08998 * 109.47030 * 335.82153 * 9 8 7 34 34 H 1.08994 * 109.47008 * 95.82828 * 9 8 7 35 35 H 1.08999 * 109.47301 * 77.83592 * 11 10 9 36 36 H 1.08996 * 109.47251 * 197.83564 * 11 10 9 37 37 H 1.09003 * 109.47429 * 317.83889 * 11 10 9 38 38 H 1.08998 * 109.47437 * 59.99841 * 12 10 9 39 39 H 1.08999 * 109.46867 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.47290 * 299.99469 * 12 10 9 41 41 H 1.09006 * 109.47125 * 300.00257 * 13 10 9 42 42 H 1.09000 * 109.47053 * 60.00104 * 13 10 9 43 43 H 0.96993 * 120.00394 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.38108 * 183.64204 * 22 8 7 45 45 H 1.08993 * 109.38875 * 303.43382 * 22 8 7 46 46 H 1.09005 * 109.43266 * 149.65584 * 23 4 2 47 47 H 1.08999 * 109.43559 * 29.78978 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6536 -1.1367 -0.0942 6 6 4.2979 -2.1583 0.8589 7 6 3.5479 -2.1691 2.1725 8 7 2.5070 -3.1945 2.1223 9 6 2.3323 -3.8320 3.4342 10 6 2.0131 -5.3159 3.2416 11 6 0.6559 -5.4601 2.5502 12 6 3.0972 -5.9627 2.3772 13 6 1.9671 -6.0088 4.6050 14 6 1.6520 -7.4702 4.4153 15 1 1.5003 -7.8654 3.4217 16 6 1.5586 -8.3030 5.5102 17 7 1.7439 -7.8218 6.7201 18 14 1.1688 -10.1147 5.2752 19 1 2.4335 -10.8764 5.1154 20 1 0.4327 -10.6206 6.4614 21 1 0.3304 -10.2873 4.0617 22 6 1.2615 -2.7986 1.5813 23 6 1.4321 -2.4040 0.0944 24 1 -0.3634 -1.0226 0.1014 25 1 -0.3633 0.5992 0.8349 26 1 -0.3634 0.4235 -0.9364 27 1 3.9503 -1.3668 -1.1174 28 1 4.0073 -0.1385 0.1639 29 1 5.3381 -1.8857 1.0371 30 1 4.2553 -3.1500 0.4086 31 1 3.0909 -1.1936 2.3392 32 1 4.2395 -2.3913 2.9852 33 1 3.2504 -3.7300 4.0128 34 1 1.5121 -3.3500 3.9661 35 1 0.7680 -5.2603 1.4845 36 1 0.2816 -6.4738 2.6923 37 1 -0.0488 -4.7488 2.9810 38 1 4.0641 -5.8600 2.8698 39 1 2.8700 -7.0200 2.2404 40 1 3.1300 -5.4692 1.4059 41 1 2.9340 -5.9060 5.0976 42 1 1.1947 -5.5479 5.2208 43 1 1.6777 -8.4076 7.4904 44 1 0.5549 -3.6250 1.6575 45 1 0.8799 -1.9437 2.1394 46 1 1.9691 -3.1937 -0.4311 47 1 0.4506 -2.2692 -0.3600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179817347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -27.708445 kcal Electronic energy + Delta-G solvation = -23927.196370 eV Core-core repulsion = 20724.160727 eV Total energy + Delta-G solvation = -3203.035643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52684 -38.68849 -36.44778 -34.43378 -33.28501 -32.12448 -29.85997 -28.64885 -27.16358 -26.49397 -25.74785 -25.01918 -22.79146 -22.06192 -20.52529 -19.01973 -18.03084 -17.23466 -16.55518 -16.15689 -15.79220 -15.42239 -15.06376 -14.46776 -14.34937 -13.92340 -13.84973 -13.30745 -13.15466 -12.93528 -12.61148 -12.44574 -12.21113 -12.14877 -12.03486 -11.75077 -11.68463 -11.37649 -11.00459 -10.90457 -10.83705 -10.70969 -10.65388 -10.37443 -10.28664 -10.00738 -9.87473 -9.64621 -9.02489 -8.89486 -8.68161 -8.32436 -7.85145 -5.97125 -3.97204 2.47979 2.91185 3.32376 3.39265 3.41390 4.06635 4.45615 4.48913 4.80841 4.87934 4.92698 5.04534 5.07943 5.21657 5.25346 5.33769 5.38733 5.51607 5.54997 5.63046 5.70239 5.73636 5.80278 5.87851 5.93282 5.99238 6.05851 6.19353 6.25479 6.33711 6.44429 6.50017 6.69473 6.77591 6.84979 7.21703 7.23888 7.26893 7.29408 7.49398 7.66227 7.70827 7.86007 8.03200 8.03787 8.47688 9.08357 9.65586 11.14492 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.003707 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.972569 B = 7552.000766 C = 7778.537305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.507 3.493 3 O -0.556 6.556 4 N -0.605 5.605 5 C 0.112 3.888 6 C -0.130 4.130 7 C 0.073 3.927 8 N -0.554 5.554 9 C 0.073 3.927 10 C -0.053 4.053 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.040 3.960 23 C 0.103 3.897 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.012 0.988 43 H 0.259 0.741 44 H 0.110 0.890 45 H 0.018 0.982 46 H 0.088 0.912 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 11.763 -13.764 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.296 3.704 3 O -0.435 6.435 4 N -0.338 5.338 5 C -0.010 4.010 6 C -0.168 4.168 7 C -0.055 4.055 8 N -0.278 5.278 9 C -0.053 4.053 10 C -0.054 4.054 11 C -0.190 4.190 12 C -0.169 4.169 13 C -0.005 4.005 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.090 4.090 23 C -0.020 4.020 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.127 0.873 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.051 11.952 -13.889 18.324 hybrid contribution -0.502 -0.520 0.651 0.973 sum -0.452 11.432 -13.238 17.497 Atomic orbital electron populations 1.22050 0.92103 1.04933 1.05011 1.20901 0.90737 0.83417 0.75341 1.90684 1.70736 1.31435 1.50612 1.47924 1.07065 1.06423 1.72355 1.21851 0.78736 1.01210 0.99234 1.21887 0.98839 1.00133 0.95975 1.21552 0.93635 0.93089 0.97205 1.58238 1.09273 1.33314 1.26996 1.22371 1.00096 0.95777 0.87080 1.20598 0.94585 0.91622 0.98608 1.21997 0.96844 1.02321 0.97879 1.21563 0.97280 0.99991 0.98085 1.19127 0.96815 0.94753 0.89762 1.21229 1.46956 0.93669 0.92582 0.92248 1.25016 0.95790 0.98373 0.95388 1.69965 1.50583 1.35329 0.97879 0.86678 0.78367 0.85911 0.77543 1.20809 1.21424 1.19930 1.22247 0.92375 1.00403 0.93933 1.21944 0.96612 0.86083 0.97388 0.89606 0.88940 0.88942 0.92122 0.89695 0.90631 0.89957 0.94839 0.91093 0.91777 0.95004 0.93973 0.91306 0.94545 0.94564 0.92934 0.93749 0.96844 0.97014 0.93174 0.87252 0.96400 0.89358 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.95 36.00 0.36 -1.15 16 2 C 0.51 6.15 7.73 -10.99 -0.08 6.07 16 3 O -0.56 -8.92 16.39 5.55 0.09 -8.83 16 4 N -0.60 -6.60 2.18 -172.42 -0.38 -6.98 16 5 C 0.11 1.19 6.16 -2.99 -0.02 1.17 16 6 C -0.13 -1.35 5.80 -27.16 -0.16 -1.51 16 7 C 0.07 0.90 5.32 -5.08 -0.03 0.88 16 8 N -0.55 -7.37 2.71 -239.49 -0.65 -8.02 16 9 C 0.07 1.19 4.26 -3.82 -0.02 1.18 16 10 C -0.05 -1.00 0.61 -154.51 -0.09 -1.10 16 11 C -0.13 -2.30 6.92 37.16 0.26 -2.04 16 12 C -0.11 -2.03 7.93 37.16 0.29 -1.74 16 13 C 0.03 0.80 4.04 -27.89 -0.11 0.69 16 14 C -0.51 -13.46 7.39 -34.44 -0.25 -13.71 16 15 H 0.06 1.53 5.83 -52.49 -0.31 1.23 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.04 0.47 4.87 -5.74 -0.03 0.44 16 23 C 0.10 0.98 5.20 -3.97 -0.02 0.96 16 24 H 0.09 0.57 5.29 -51.93 -0.27 0.30 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.03 6.95 -51.93 -0.36 0.67 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.91 7.98 -51.93 -0.41 0.49 16 31 H 0.03 0.45 7.32 -51.93 -0.38 0.07 16 32 H 0.07 0.90 7.13 -51.93 -0.37 0.53 16 33 H 0.06 1.08 7.13 -51.93 -0.37 0.71 16 34 H 0.03 0.54 7.74 -51.93 -0.40 0.13 16 35 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 36 H 0.07 1.35 6.25 -51.93 -0.32 1.03 16 37 H 0.04 0.59 7.26 -51.93 -0.38 0.21 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 1.04 6.62 -51.93 -0.34 0.69 16 40 H 0.04 0.71 7.45 -51.93 -0.39 0.32 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.11 1.32 3.70 -51.93 -0.19 1.13 16 45 H 0.02 0.23 8.11 -51.93 -0.42 -0.20 16 46 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 47 H 0.09 0.62 5.66 -51.93 -0.29 0.33 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -30.99 347.47 -8.06 -39.05 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -8.07 Total: -2.47 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 0.00 Total: -8.42 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.29 Total: -40.74 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.99 -8.06 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179817347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.341 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds