Wall clock time and date at job start Tue Mar 31 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 N 1.46904 * 109.46975 * 120.00017 * 2 1 3 5 5 C 1.46896 * 111.00055 * 86.14135 * 4 2 1 6 6 C 1.53127 * 109.52245 * 206.20096 * 5 4 2 7 7 C 1.53037 * 109.27610 * 182.43780 * 6 5 4 8 8 N 1.46846 * 109.52232 * 59.18230 * 7 6 5 9 9 C 1.46898 * 110.99907 * 174.15989 * 8 7 6 10 10 C 1.53001 * 109.47635 * 93.19793 * 9 8 7 11 11 C 1.52999 * 109.46957 * 66.00312 * 10 9 8 12 12 C 1.52997 * 109.46620 * 306.00802 * 10 9 8 13 13 C 1.52994 * 109.47406 * 186.00532 * 10 9 8 14 14 C 1.50700 * 109.47173 * 179.97438 * 13 10 9 15 15 H 1.07998 * 119.99617 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99806 * 179.97438 * 14 13 10 17 17 N 1.31504 * 120.00270 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99645 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47388 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47517 * 120.00099 * 18 16 14 21 21 H 1.48503 * 109.46953 * 240.00090 * 18 16 14 22 22 C 1.46852 * 111.19631 * 298.25423 * 8 7 6 23 23 C 1.53033 * 109.52226 * 61.74594 * 22 8 7 24 24 H 1.09001 * 109.47329 * 300.00462 * 1 2 3 25 25 H 1.09000 * 109.46929 * 59.99865 * 1 2 3 26 26 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47329 * 239.99538 * 2 1 3 28 28 H 1.09001 * 109.47381 * 304.91516 * 3 2 1 29 29 H 1.09000 * 109.47117 * 64.91896 * 3 2 1 30 30 H 1.09002 * 109.47163 * 184.91706 * 3 2 1 31 31 H 1.00903 * 110.99917 * 210.09572 * 4 2 1 32 32 H 1.09003 * 109.52524 * 326.32433 * 5 4 2 33 33 H 1.09000 * 109.49830 * 62.50005 * 6 5 4 34 34 H 1.08995 * 109.50099 * 302.37978 * 6 5 4 35 35 H 1.08996 * 109.46273 * 299.16412 * 7 6 5 36 36 H 1.09001 * 109.44660 * 179.18820 * 7 6 5 37 37 H 1.08997 * 109.46977 * 333.19453 * 9 8 7 38 38 H 1.09002 * 109.46865 * 213.20053 * 9 8 7 39 39 H 1.08997 * 109.47070 * 138.30552 * 11 10 9 40 40 H 1.08998 * 109.47558 * 258.31117 * 11 10 9 41 41 H 1.09001 * 109.47104 * 18.30647 * 11 10 9 42 42 H 1.09001 * 109.47468 * 345.47836 * 12 10 9 43 43 H 1.09005 * 109.47448 * 105.48503 * 12 10 9 44 44 H 1.09009 * 109.46716 * 225.47902 * 12 10 9 45 45 H 1.09003 * 109.47121 * 59.99496 * 13 10 9 46 46 H 1.09003 * 109.46906 * 299.99916 * 13 10 9 47 47 H 0.97000 * 120.00368 * 179.97438 * 17 16 14 48 48 H 1.09000 * 109.46207 * 181.75936 * 22 8 7 49 49 H 1.08998 * 109.46211 * 301.72716 * 22 8 7 50 50 H 1.09004 * 109.50319 * 180.88493 * 23 22 8 51 51 H 1.09000 * 109.51004 * 60.76036 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1081 -2.1410 0.9718 6 6 1.9719 -2.8782 2.3071 7 6 2.1256 -4.3825 2.0717 8 7 3.4392 -4.6540 1.4740 9 6 3.6778 -6.0991 1.3614 10 6 3.2369 -6.5827 -0.0216 11 6 4.1382 -5.9612 -1.0904 12 6 1.7869 -6.1628 -0.2703 13 6 3.3448 -8.1074 -0.0871 14 6 2.9100 -8.5837 -1.4491 15 1 2.5892 -7.8701 -2.1937 16 6 2.9227 -9.9303 -1.7450 17 7 3.3148 -10.7990 -0.8389 18 14 2.3844 -10.5206 -3.4335 19 1 1.9934 -9.3537 -4.2645 20 1 3.5067 -11.2405 -4.0873 21 1 1.2246 -11.4370 -3.2910 22 6 3.5751 -3.9949 0.1688 23 6 3.4647 -2.4790 0.3473 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6066 1.9811 -0.8427 29 1 1.7504 1.9302 0.9308 30 1 3.1264 1.4437 -0.0881 31 1 2.9086 -0.3181 1.4956 32 1 1.3087 -2.4537 0.3000 33 1 0.9906 -2.6753 2.7362 34 1 2.7472 -2.5359 2.9924 35 1 1.3416 -4.7265 1.3971 36 1 2.0434 -4.9089 3.0226 37 1 3.1068 -6.6224 2.1284 38 1 4.7399 -6.3035 1.4963 39 1 4.3842 -6.7130 -1.8402 40 1 3.6178 -5.1301 -1.5662 41 1 5.0549 -5.5976 -0.6260 42 1 1.3314 -5.8544 0.6708 43 1 1.7651 -5.3309 -0.9744 44 1 1.2310 -7.0040 -0.6845 45 1 2.7027 -8.5501 0.6744 46 1 4.3779 -8.4064 0.0901 47 1 3.3234 -11.7463 -1.0469 48 1 4.5457 -4.2400 -0.2625 49 1 2.7843 -4.3408 -0.4968 50 1 3.5499 -1.9910 -0.6236 51 1 4.2635 -2.1304 1.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179838410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:05 Heat of formation + Delta-G solvation = 24.003870 kcal Electronic energy + Delta-G solvation = -24175.285737 eV Core-core repulsion = 21110.325603 eV Total energy + Delta-G solvation = -3064.960135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.21899 -37.84154 -35.35203 -33.01047 -31.91175 -30.84636 -29.20209 -27.44700 -27.22311 -26.74695 -25.81549 -23.07619 -22.43798 -21.62827 -20.68992 -19.49983 -18.21118 -16.18106 -15.93180 -15.75745 -15.22448 -14.99085 -14.70034 -14.38551 -14.07776 -13.78011 -13.64782 -13.08328 -12.84834 -12.79546 -12.60913 -12.34129 -12.19488 -12.03848 -11.82548 -11.57269 -11.33358 -11.19059 -11.16531 -10.91157 -10.86210 -10.69380 -10.63261 -10.44794 -10.38255 -10.23753 -10.00804 -9.76938 -9.65176 -9.23825 -8.98905 -8.41031 -8.35207 -7.55252 -5.99228 -3.99671 3.29509 3.37731 3.40792 3.98363 4.35979 4.46056 4.71780 4.80742 4.92208 5.01100 5.13261 5.25873 5.35481 5.36203 5.44012 5.47234 5.54679 5.61233 5.62414 5.66068 5.68795 5.74139 5.84127 5.86087 5.89978 5.95301 6.05632 6.11534 6.13252 6.18185 6.25336 6.29224 6.35030 6.42732 6.49933 6.55150 6.67014 6.77780 7.00165 7.03997 7.19565 7.29906 7.32119 7.54324 7.58262 7.69570 7.82758 7.99915 8.44669 9.06212 9.63133 11.11977 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.003678 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.835635 B = 7611.107411 C = 8066.420430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 C -0.154 4.154 4 N -0.682 5.682 5 C 0.087 3.913 6 C -0.099 4.099 7 C 0.035 3.965 8 N -0.533 5.533 9 C 0.063 3.937 10 C -0.086 4.086 11 C -0.144 4.144 12 C -0.155 4.155 13 C 0.037 3.963 14 C -0.508 4.508 15 H 0.058 0.942 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.021 3.979 23 C -0.147 4.147 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.339 0.661 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.013 0.987 46 H 0.015 0.985 47 H 0.259 0.741 48 H 0.093 0.907 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 20.588 3.487 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.212 4.212 4 N -0.313 5.313 5 C -0.022 4.022 6 C -0.137 4.137 7 C -0.093 4.093 8 N -0.256 5.256 9 C -0.065 4.065 10 C -0.088 4.088 11 C -0.201 4.201 12 C -0.211 4.211 13 C 0.000 4.000 14 C -0.546 4.546 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.107 4.107 23 C -0.186 4.186 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.068 0.932 48 H 0.111 0.889 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.580 20.600 4.128 21.167 hybrid contribution -0.041 -0.926 -2.031 2.233 sum -2.621 19.674 2.097 19.958 Atomic orbital electron populations 1.21799 0.94721 1.01856 1.01359 1.21497 0.95960 0.93987 0.91885 1.21976 1.00689 0.96054 1.02463 1.60687 1.33923 1.03357 1.33331 1.21670 0.96474 0.87040 0.97046 1.21517 1.01705 0.93930 0.96573 1.22569 0.91429 0.95680 0.99623 1.62227 1.29076 1.10989 1.23349 1.22440 1.00989 0.85881 0.97165 1.21130 0.94243 0.99949 0.93447 1.22703 0.98172 0.99954 0.99264 1.22598 0.97420 1.00931 1.00169 1.19166 0.96977 0.86995 0.96910 1.21245 1.43159 0.91626 0.98609 0.92425 1.25015 0.95680 0.97143 0.96707 1.69968 1.48079 1.01823 1.33654 0.86628 0.78285 0.78795 0.84844 1.19835 1.21123 1.21146 1.23456 1.03780 0.91897 0.91546 1.22386 0.98106 0.97956 1.00182 0.92160 0.92889 0.92800 0.93875 0.92084 0.91826 0.92888 0.84227 0.91019 0.91632 0.91611 0.92786 0.91189 0.91940 0.91357 0.91556 0.93431 0.93626 0.92844 0.93916 0.90966 0.96818 0.96675 0.93164 0.88934 0.91470 0.92622 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.41 37.16 0.35 -0.91 16 2 C 0.08 0.70 3.03 -67.71 -0.21 0.49 16 3 C -0.15 -1.14 9.16 37.16 0.34 -0.80 16 4 N -0.68 -6.78 6.07 -99.61 -0.60 -7.38 16 5 C 0.09 0.99 2.33 -67.59 -0.16 0.83 16 6 C -0.10 -1.17 5.70 -26.65 -0.15 -1.32 16 7 C 0.04 0.48 4.85 -3.83 -0.02 0.46 16 8 N -0.53 -7.93 4.86 -234.67 -1.14 -9.07 16 9 C 0.06 1.08 4.81 -3.82 -0.02 1.07 16 10 C -0.09 -1.67 0.53 -154.51 -0.08 -1.76 16 11 C -0.14 -2.64 6.97 37.16 0.26 -2.38 16 12 C -0.16 -2.85 7.42 37.16 0.28 -2.57 16 13 C 0.04 0.92 3.91 -27.89 -0.11 0.81 16 14 C -0.51 -13.71 6.69 -34.44 -0.23 -13.94 16 15 H 0.06 1.53 6.86 -52.49 -0.36 1.17 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.60 13.28 55.43 0.74 -25.86 16 18 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.02 0.29 3.31 -3.83 -0.01 0.28 16 23 C -0.15 -1.73 5.34 -26.65 -0.14 -1.87 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.54 7.53 -51.93 -0.39 0.14 16 27 H 0.04 0.43 7.25 -51.93 -0.38 0.05 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.34 3.16 8.04 -39.29 -0.32 2.85 16 32 H 0.07 0.89 7.20 -51.93 -0.37 0.52 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.78 4.69 -51.93 -0.24 0.54 16 36 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 37 H 0.06 1.10 7.59 -51.93 -0.39 0.70 16 38 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 39 H 0.07 1.39 6.49 -51.93 -0.34 1.05 16 40 H 0.05 0.78 5.07 -51.93 -0.26 0.52 16 41 H 0.05 0.77 5.92 -51.93 -0.31 0.46 16 42 H 0.05 0.90 4.09 -51.93 -0.21 0.69 16 43 H 0.04 0.73 5.49 -51.93 -0.29 0.44 16 44 H 0.07 1.52 6.59 -51.92 -0.34 1.18 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.09 1.36 4.83 -51.93 -0.25 1.11 16 49 H 0.07 1.02 2.97 -51.93 -0.15 0.87 16 50 H 0.06 0.62 7.59 -51.93 -0.39 0.23 16 51 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -28.00 357.81 -9.83 -37.82 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -9.19 Total: 2.83 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 0.00 Total: -20.17 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -1.01 Total: -42.32 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.00 -9.83 -37.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179838410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.827 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds