Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 5 5 O 1.21279 * 119.99925 * 359.97438 * 4 2 1 6 6 C 1.50700 * 119.99961 * 180.02562 * 4 2 1 7 7 C 1.52992 * 109.47257 * 180.02562 * 6 4 2 8 8 C 1.53118 * 109.52214 * 294.87190 * 7 6 4 9 9 C 1.53050 * 109.27633 * 182.50350 * 8 7 6 10 10 N 1.46847 * 109.57099 * 59.08176 * 9 8 7 11 11 C 1.46907 * 110.99607 * 174.19159 * 10 9 8 12 12 C 1.52998 * 109.47078 * 314.21668 * 11 10 9 13 13 C 1.53001 * 109.47101 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47329 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99888 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00190 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99671 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00123 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47251 * 59.99597 * 18 16 14 20 20 H 1.48499 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.46955 * 299.99926 * 18 16 14 22 22 C 1.46845 * 111.20164 * 298.28988 * 10 9 8 23 23 C 1.53035 * 109.52187 * 61.74554 * 22 10 9 24 24 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 25 25 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 26 26 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 27 27 H 1.09001 * 109.47347 * 179.72623 * 3 2 1 28 28 H 1.09004 * 109.47133 * 299.72731 * 3 2 1 29 29 H 1.09008 * 109.47066 * 59.72535 * 3 2 1 30 30 H 1.09004 * 109.46932 * 300.00223 * 6 4 2 31 31 H 1.08997 * 109.47392 * 59.99562 * 6 4 2 32 32 H 1.08999 * 109.52537 * 55.00072 * 7 6 4 33 33 H 1.08997 * 109.50699 * 302.38229 * 8 7 6 34 34 H 1.09001 * 109.50412 * 62.49924 * 8 7 6 35 35 H 1.08998 * 109.40869 * 299.06963 * 9 8 7 36 36 H 1.08994 * 109.45528 * 179.13002 * 9 8 7 37 37 H 1.09003 * 109.46738 * 74.20910 * 11 10 9 38 38 H 1.08996 * 109.47315 * 194.20829 * 11 10 9 39 39 H 1.08999 * 109.47122 * 299.99517 * 12 11 10 40 40 H 1.08996 * 109.47733 * 59.99416 * 12 11 10 41 41 H 1.09003 * 109.47304 * 299.99892 * 13 12 11 42 42 H 1.09006 * 109.47020 * 59.99703 * 13 12 11 43 43 H 0.97000 * 119.99635 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.46157 * 301.72796 * 22 10 9 45 45 H 1.08995 * 109.45001 * 181.75590 * 22 10 9 46 46 H 1.09003 * 109.50142 * 180.88142 * 23 22 10 47 47 H 1.08998 * 109.50452 * 60.76241 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0056 5 8 1.5323 -2.2175 0.0110 6 6 3.6458 -1.1674 0.0061 7 6 4.1557 -2.6098 0.0122 8 6 3.7535 -3.2892 1.3242 9 6 4.3196 -4.7109 1.3512 10 7 5.7823 -4.6603 1.2322 11 6 6.3701 -5.9971 1.3926 12 6 5.7327 -6.6932 2.5968 13 6 6.3444 -8.0857 2.7635 14 6 5.7171 -8.7712 3.9499 15 1 4.9584 -8.2642 4.5276 16 6 6.1126 -10.0452 4.2987 17 7 7.0369 -10.6624 3.5955 18 14 5.3356 -10.8946 5.7697 19 1 3.8719 -11.0200 5.5528 20 1 5.9300 -12.2457 5.9322 21 1 5.5876 -10.0930 6.9942 22 6 6.1909 -4.0552 -0.0419 23 6 5.6820 -2.6135 -0.1098 24 1 -0.3634 0.0049 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 3.2691 1.0694 0.0049 28 1 1.9379 1.8381 -0.8924 29 1 1.9305 1.8424 0.8876 30 1 4.0095 -0.6576 -0.8860 31 1 4.0088 -0.6495 0.8938 32 1 3.7219 -3.1531 -0.8272 33 1 4.1540 -2.7229 2.1650 34 1 2.6665 -3.3278 1.3956 35 1 3.9070 -5.2809 0.5188 36 1 4.0480 -5.1920 2.2908 37 1 6.1858 -6.5852 0.4936 38 1 7.4442 -5.9049 1.5527 39 1 5.9169 -6.1051 3.4959 40 1 4.6585 -6.7854 2.4368 41 1 6.1599 -8.6736 1.8644 42 1 7.4187 -7.9938 2.9235 43 1 7.3154 -11.5585 3.8410 44 1 5.7695 -4.6284 -0.8678 45 1 7.2784 -4.0603 -0.1139 46 1 5.9720 -2.1698 -1.0622 47 1 6.1139 -2.0363 0.7078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182183580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = -50.884207 kcal Electronic energy + Delta-G solvation = -22461.529689 eV Core-core repulsion = 19257.489069 eV Total energy + Delta-G solvation = -3204.040620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38316 -38.73676 -35.92056 -35.14194 -33.28196 -31.43477 -30.56554 -29.53316 -27.97692 -26.53087 -25.46792 -23.37193 -22.95975 -21.60221 -19.85098 -19.40786 -19.33191 -17.21397 -16.38234 -16.30248 -16.19485 -15.40675 -14.84865 -14.54887 -14.42969 -14.21259 -14.02332 -13.73052 -13.19342 -13.04831 -12.96070 -12.86347 -12.70559 -12.34037 -12.14989 -12.05636 -11.84885 -11.45122 -11.30947 -11.02698 -10.79721 -10.68515 -10.57625 -10.50382 -10.39732 -10.04836 -9.74710 -9.50930 -9.24662 -9.03663 -8.98131 -8.28024 -7.89240 -5.93762 -3.95567 2.40151 2.68881 3.38097 3.41710 3.44890 4.24050 4.28191 4.52213 4.56768 4.68942 4.74843 4.88188 4.89929 5.03842 5.18449 5.20655 5.28808 5.32080 5.39781 5.41845 5.48342 5.54813 5.60084 5.73844 5.81978 5.89138 5.96465 5.98534 6.07558 6.09906 6.17635 6.33574 6.38312 6.42103 6.52794 6.80528 6.88337 7.00903 7.18824 7.54246 7.54461 7.74688 7.90554 7.93500 8.06979 8.50524 9.11395 9.67938 11.17721 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.002786 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.291856 B =10046.833427 C =10839.901708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.629 5.629 3 C 0.075 3.925 4 C 0.511 3.489 5 O -0.529 6.529 6 C -0.134 4.134 7 C -0.074 4.074 8 C -0.114 4.114 9 C 0.051 3.949 10 N -0.539 5.539 11 C 0.056 3.944 12 C -0.112 4.112 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.055 3.945 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 26.639 -10.366 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.364 5.364 3 C -0.068 4.068 4 C 0.300 3.700 5 O -0.404 6.404 6 C -0.174 4.174 7 C -0.093 4.093 8 C -0.151 4.151 9 C -0.077 4.077 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.073 4.073 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.839 26.204 -10.003 29.123 hybrid contribution -0.668 -0.882 0.107 1.112 sum -8.507 25.322 -9.896 28.487 Atomic orbital electron populations 1.21599 0.79353 1.02999 1.01865 1.47827 1.07134 1.06575 1.74874 1.21858 0.97683 0.85346 1.01930 1.20915 0.90635 0.82989 0.75501 1.90699 1.70408 1.30753 1.48582 1.21792 0.91344 1.00204 1.04012 1.20998 0.95236 0.93197 0.99825 1.21763 1.01404 0.95795 0.96183 1.22173 0.87378 0.96325 1.01790 1.62066 1.09212 1.22776 1.32374 1.22267 0.99363 0.86805 0.98645 1.21790 0.99194 0.98421 0.95575 1.19066 0.96084 0.89663 0.96711 1.21226 1.21726 0.99870 1.12808 0.92765 1.25031 0.95199 0.97488 0.96824 1.69963 1.30370 1.13609 1.39714 0.86659 0.79540 0.78588 0.83218 1.20273 1.21333 1.20241 1.22022 1.00085 0.94537 0.90649 1.21633 0.94590 0.96993 1.01489 0.92798 0.91455 0.90485 0.89974 0.92070 0.92003 0.89087 0.88744 0.90826 0.91933 0.90124 0.95314 0.89513 0.95503 0.91201 0.92610 0.93129 0.96844 0.96593 0.93028 0.95325 0.90991 0.91974 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.48 59.84 0.63 1.23 16 2 N -0.63 -5.04 3.27 -189.52 -0.62 -5.66 16 3 C 0.08 0.32 10.60 59.84 0.63 0.95 16 4 C 0.51 5.46 7.41 -10.98 -0.08 5.38 16 5 O -0.53 -7.80 13.56 5.56 0.08 -7.72 16 6 C -0.13 -1.12 3.49 -27.89 -0.10 -1.22 16 7 C -0.07 -0.83 1.90 -90.50 -0.17 -1.00 16 8 C -0.11 -1.55 5.09 -26.64 -0.14 -1.68 16 9 C 0.05 0.82 4.85 -3.83 -0.02 0.80 16 10 N -0.54 -8.74 4.81 -234.67 -1.13 -9.87 16 11 C 0.06 1.05 5.27 -3.82 -0.02 1.03 16 12 C -0.11 -2.45 4.40 -26.73 -0.12 -2.57 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 18 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 C 0.06 0.74 5.42 -3.84 -0.02 0.72 16 23 C -0.11 -1.14 5.38 -26.65 -0.14 -1.29 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 26 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 27 H 0.08 0.26 5.77 -51.93 -0.30 -0.03 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.09 0.56 7.80 -51.93 -0.40 0.15 16 31 H 0.09 0.66 7.78 -51.93 -0.40 0.26 16 32 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.20 6.02 -51.93 -0.31 0.89 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 1.51 5.81 -51.93 -0.30 1.21 16 37 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.10 6.21 -51.93 -0.32 0.78 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -33.87 362.41 -9.31 -43.18 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -8.72 Total: -4.54 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.09 Total: -11.17 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -1.01 Total: -42.50 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.87 -9.31 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182183580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.705 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds