Wall clock time and date at job start Tue Mar 31 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99731 * 2 1 4 4 C 1.46901 * 111.00344 * 123.95298 * 2 1 3 5 5 C 1.52998 * 112.85018 * 297.93290 * 4 2 1 6 6 N 1.46900 * 109.47180 * 55.64167 * 5 4 2 7 7 C 1.46903 * 110.99954 * 64.24310 * 6 5 4 8 8 C 1.46896 * 110.99796 * 188.19361 * 6 5 4 9 9 C 1.53006 * 109.47036 * 109.06275 * 8 6 5 10 10 C 1.53007 * 109.46857 * 306.56610 * 9 8 6 11 11 C 1.52998 * 109.47108 * 66.56205 * 9 8 6 12 12 C 1.52997 * 109.47018 * 186.56808 * 9 8 6 13 13 C 1.50698 * 109.46967 * 179.97438 * 12 9 8 14 14 H 1.08008 * 120.00169 * 359.97438 * 13 12 9 15 15 C 1.37882 * 120.00390 * 179.97438 * 13 12 9 16 16 N 1.31515 * 119.99472 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00206 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47386 * 59.99830 * 17 15 13 19 19 H 1.48496 * 109.47123 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46948 * 299.99690 * 17 15 13 21 21 C 1.53784 * 113.61007 * 69.12622 * 4 2 1 22 22 C 1.53962 * 87.01746 * 89.23128 * 21 4 2 23 23 C 1.53777 * 87.11076 * 25.36064 * 22 21 4 24 24 H 1.09002 * 109.47085 * 307.81742 * 1 2 3 25 25 H 1.08992 * 109.47481 * 67.82081 * 1 2 3 26 26 H 1.09003 * 109.46706 * 187.82609 * 1 2 3 27 27 H 1.09005 * 109.46662 * 183.95405 * 3 2 1 28 28 H 1.08994 * 109.47283 * 303.95761 * 3 2 1 29 29 H 1.09001 * 109.46857 * 63.95562 * 3 2 1 30 30 H 1.08994 * 109.47224 * 295.63986 * 5 4 2 31 31 H 1.09003 * 109.46821 * 175.64268 * 5 4 2 32 32 H 1.09005 * 109.47037 * 183.25475 * 7 6 5 33 33 H 1.09002 * 109.47117 * 303.25100 * 7 6 5 34 34 H 1.09001 * 109.47204 * 63.24993 * 7 6 5 35 35 H 1.08990 * 109.47562 * 349.06032 * 8 6 5 36 36 H 1.09006 * 109.47388 * 229.05429 * 8 6 5 37 37 H 1.08995 * 109.46673 * 74.34611 * 10 9 8 38 38 H 1.08996 * 109.46640 * 194.35020 * 10 9 8 39 39 H 1.08998 * 109.46994 * 314.34989 * 10 9 8 40 40 H 1.09006 * 109.46770 * 53.44766 * 11 9 8 41 41 H 1.08998 * 109.46801 * 173.44241 * 11 9 8 42 42 H 1.08998 * 109.47620 * 293.44443 * 11 9 8 43 43 H 1.08997 * 109.47099 * 299.99024 * 12 9 8 44 44 H 1.08999 * 109.47720 * 59.99952 * 12 9 8 45 45 H 0.97000 * 119.99751 * 179.97438 * 16 15 13 46 46 H 1.09003 * 113.61073 * 203.74769 * 21 4 2 47 47 H 1.08997 * 113.61987 * 334.65537 * 21 4 2 48 48 H 1.08994 * 113.53448 * 270.80835 * 22 21 4 49 49 H 1.09004 * 113.73895 * 139.94408 * 22 21 4 50 50 H 1.09004 * 113.61122 * 220.08822 * 23 22 21 51 51 H 1.09001 * 113.69179 * 89.20162 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.5919 -0.1747 2.4897 6 7 0.1288 -0.0624 2.5580 7 6 -0.5037 -1.3875 2.5114 8 6 -0.2870 0.6775 3.7569 9 6 -0.8258 2.0499 3.3480 10 6 0.2107 2.7670 2.4805 11 6 -2.1213 1.8731 2.5533 12 6 -1.1056 2.8820 4.6010 13 6 -1.6357 4.2340 4.1982 14 1 -1.7602 4.4757 3.1529 15 6 -1.9618 5.1624 5.1640 16 7 -1.8097 4.8683 6.4368 17 14 -2.6195 6.8379 4.6647 18 1 -3.8766 6.6664 3.8931 19 1 -2.8909 7.6457 5.8808 20 1 -1.6132 7.5340 3.8232 21 6 1.7476 -2.2797 1.0285 22 6 3.0920 -2.3648 0.2830 23 6 3.4966 -1.0808 1.0263 24 1 -0.3633 0.6301 0.8118 25 1 -0.3634 0.3879 -0.9515 26 1 -0.3633 -1.0181 0.1399 27 1 3.0828 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8523 29 1 1.7043 1.8723 0.9233 30 1 2.0378 0.8136 2.6018 31 1 1.9441 -0.8251 3.2904 32 1 -1.5876 -1.2727 2.5052 33 1 -0.1884 -1.9090 1.6076 34 1 -0.2043 -1.9639 3.3867 35 1 0.5687 0.8059 4.4196 36 1 -1.0676 0.1205 4.2752 37 1 0.2245 2.3197 1.4866 38 1 -0.0500 3.8223 2.4006 39 1 1.1960 2.6695 2.9364 40 1 -2.8185 1.2618 3.1265 41 1 -2.5664 2.8495 2.3623 42 1 -1.9019 1.3820 1.6053 43 1 -1.8440 2.3713 5.2189 44 1 -0.1827 3.0081 5.1671 45 1 -2.0387 5.5216 7.1163 46 1 1.7484 -2.7927 1.9902 47 1 0.8876 -2.5380 0.4105 48 1 3.0008 -2.2349 -0.7953 49 1 3.6906 -3.2342 0.5555 50 1 4.0466 -0.3726 0.4066 51 1 3.9768 -1.2640 1.9875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189007302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:56 Heat of formation + Delta-G solvation = 42.884915 kcal Electronic energy + Delta-G solvation = -25075.383027 eV Core-core repulsion = 22011.241636 eV Total energy + Delta-G solvation = -3064.141391 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54354 -37.62831 -34.86813 -34.56391 -32.19177 -28.93293 -27.85930 -26.97069 -26.41102 -26.28615 -25.13184 -24.56878 -23.15676 -22.26626 -20.74407 -18.46265 -17.86271 -16.52905 -16.20317 -15.73007 -15.26732 -14.65590 -14.44339 -14.24412 -13.89438 -13.56790 -13.33822 -13.04959 -12.92220 -12.72999 -12.37948 -12.14902 -12.03068 -11.87222 -11.60192 -11.52114 -11.46573 -11.24941 -10.98382 -10.86088 -10.81822 -10.74889 -10.59042 -10.43469 -10.33613 -10.23420 -10.02294 -9.97366 -9.56148 -8.96188 -8.88962 -8.30696 -8.25560 -7.45846 -5.95451 -3.95286 3.34999 3.39669 3.41924 3.99287 4.18254 4.49635 4.57847 4.74408 4.84419 4.94801 5.27096 5.38039 5.41046 5.49594 5.53302 5.60404 5.63210 5.64440 5.68523 5.71070 5.84576 5.87510 5.91475 5.95340 5.96317 6.03321 6.04793 6.16721 6.20643 6.29919 6.31252 6.34425 6.37315 6.54931 6.67822 6.81067 6.83385 6.87271 7.22536 7.24129 7.27902 7.31619 7.35091 7.44031 7.49846 7.72299 7.87561 8.04985 8.49795 9.09886 9.67231 11.16208 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029439 B = 0.004288 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.898491 B = 6527.535041 C = 6754.590368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.512 5.512 3 C 0.008 3.992 4 C 0.092 3.908 5 C 0.035 3.965 6 N -0.523 5.523 7 C 0.006 3.994 8 C 0.059 3.941 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.121 4.121 12 C 0.033 3.967 13 C -0.506 4.506 14 H 0.059 0.941 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.129 4.129 24 H 0.098 0.902 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.017 0.983 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.259 0.741 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.828 -13.859 -11.109 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.235 5.235 3 C -0.140 4.140 4 C 0.001 3.999 5 C -0.095 4.095 6 N -0.246 5.246 7 C -0.142 4.142 8 C -0.068 4.068 9 C -0.049 4.049 10 C -0.184 4.184 11 C -0.178 4.178 12 C -0.004 4.004 13 C -0.544 4.544 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.166 4.166 22 C -0.166 4.166 23 C -0.168 4.168 24 H 0.116 0.884 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.791 -13.749 -11.771 19.705 hybrid contribution -0.375 0.927 1.468 1.776 sum 7.416 -12.822 -10.303 18.043 Atomic orbital electron populations 1.23069 0.86750 1.02958 1.02028 1.62176 1.09090 1.13328 1.38909 1.22615 0.99726 0.89582 1.02080 1.22174 0.95122 0.93479 0.89084 1.22851 0.89013 1.01177 0.96448 1.62354 1.06217 1.16274 1.39777 1.22936 0.99855 0.90533 1.00844 1.22469 0.98871 0.95911 0.89549 1.20544 0.94465 0.92068 0.97808 1.21958 0.97088 1.01117 0.98282 1.21726 0.96770 1.01137 0.98214 1.19115 0.96341 0.93865 0.91090 1.21195 1.42083 0.98498 0.92618 0.92316 1.25010 0.96089 0.98430 0.95013 1.69958 1.49154 1.35149 0.99560 0.86739 0.79501 0.84489 0.77756 1.20323 1.21468 1.20344 1.23139 0.98021 0.95218 1.00264 1.22722 0.96769 0.97022 1.00109 1.22950 0.95117 0.98207 1.00484 0.88413 0.93882 0.92441 0.92462 0.91997 0.92781 0.90356 0.95041 0.91708 0.90091 0.96433 0.93867 0.92782 0.93118 0.92033 0.95094 0.94710 0.92228 0.94062 0.97006 0.97081 0.93146 0.90382 0.90868 0.89769 0.92315 0.91079 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 7.99 60.06 0.48 0.47 16 2 N -0.51 -6.29 4.81 -234.45 -1.13 -7.41 16 3 C 0.01 0.10 8.86 60.07 0.53 0.63 16 4 C 0.09 1.05 0.27 -130.79 -0.04 1.01 16 5 C 0.03 0.45 3.50 -3.83 -0.01 0.44 16 6 N -0.52 -7.20 0.67 -242.91 -0.16 -7.36 16 7 C 0.01 0.08 7.37 60.07 0.44 0.52 16 8 C 0.06 1.00 4.26 -3.82 -0.02 0.98 16 9 C -0.05 -0.94 0.61 -154.50 -0.09 -1.04 16 10 C -0.13 -2.38 6.47 37.16 0.24 -2.14 16 11 C -0.12 -2.28 8.15 37.16 0.30 -1.98 16 12 C 0.03 0.84 4.04 -27.89 -0.11 0.72 16 13 C -0.51 -13.76 7.36 -34.44 -0.25 -14.01 16 14 H 0.06 1.56 5.81 -52.48 -0.31 1.25 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.13 -1.30 4.88 -25.82 -0.13 -1.42 16 22 C -0.13 -1.21 8.00 -25.83 -0.21 -1.42 16 23 C -0.13 -1.31 7.19 -25.92 -0.19 -1.49 16 24 H 0.10 1.41 1.99 -51.93 -0.10 1.30 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.70 4.71 -51.93 -0.24 0.45 16 27 H 0.06 0.65 6.84 -51.93 -0.36 0.30 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.74 3.32 -51.93 -0.17 0.57 16 30 H 0.08 1.13 5.45 -51.93 -0.28 0.85 16 31 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.89 2.77 -51.93 -0.14 0.74 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 0.76 7.57 -51.93 -0.39 0.37 16 36 H 0.05 0.93 7.54 -51.93 -0.39 0.54 16 37 H 0.05 0.84 3.74 -51.93 -0.19 0.65 16 38 H 0.06 1.29 6.28 -51.93 -0.33 0.96 16 39 H 0.03 0.56 6.94 -51.93 -0.36 0.20 16 40 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 41 H 0.06 1.23 6.43 -51.93 -0.33 0.90 16 42 H 0.04 0.69 6.00 -51.93 -0.31 0.38 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 0.76 7.84 -51.93 -0.41 0.35 16 47 H 0.07 0.76 6.11 -51.93 -0.32 0.44 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.73 6.91 -51.93 -0.36 0.37 16 51 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -28.15 348.06 -8.25 -36.41 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.78 Total: -0.05 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 0.86 Total: -17.27 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.55 Total: -40.91 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.15 -8.25 -36.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189007302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.290 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds