Wall clock time and date at job start Tue Mar 31 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99731 * 2 1 4 4 C 1.46901 * 111.00344 * 123.95298 * 2 1 3 5 5 C 1.52998 * 112.85018 * 297.93290 * 4 2 1 6 6 N 1.46900 * 109.47180 * 55.64167 * 5 4 2 7 7 C 1.46903 * 110.99954 * 64.24310 * 6 5 4 8 8 C 1.46896 * 110.99796 * 188.19361 * 6 5 4 9 9 C 1.53006 * 109.47036 * 109.06275 * 8 6 5 10 10 C 1.53007 * 109.46857 * 306.56610 * 9 8 6 11 11 C 1.52998 * 109.47108 * 66.56205 * 9 8 6 12 12 C 1.52997 * 109.47018 * 186.56808 * 9 8 6 13 13 C 1.50698 * 109.46967 * 179.97438 * 12 9 8 14 14 H 1.08008 * 120.00169 * 359.97438 * 13 12 9 15 15 C 1.37882 * 120.00390 * 179.97438 * 13 12 9 16 16 N 1.31515 * 119.99472 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00206 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47386 * 59.99830 * 17 15 13 19 19 H 1.48496 * 109.47123 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46948 * 299.99690 * 17 15 13 21 21 C 1.53784 * 113.61007 * 69.12622 * 4 2 1 22 22 C 1.53962 * 87.01746 * 89.23128 * 21 4 2 23 23 C 1.53777 * 87.11076 * 25.36064 * 22 21 4 24 24 H 1.09002 * 109.47085 * 307.81742 * 1 2 3 25 25 H 1.08992 * 109.47481 * 67.82081 * 1 2 3 26 26 H 1.09003 * 109.46706 * 187.82609 * 1 2 3 27 27 H 1.09005 * 109.46662 * 183.95405 * 3 2 1 28 28 H 1.08994 * 109.47283 * 303.95761 * 3 2 1 29 29 H 1.09001 * 109.46857 * 63.95562 * 3 2 1 30 30 H 1.08994 * 109.47224 * 295.63986 * 5 4 2 31 31 H 1.09003 * 109.46821 * 175.64268 * 5 4 2 32 32 H 1.09005 * 109.47037 * 183.25475 * 7 6 5 33 33 H 1.09002 * 109.47117 * 303.25100 * 7 6 5 34 34 H 1.09001 * 109.47204 * 63.24993 * 7 6 5 35 35 H 1.08990 * 109.47562 * 349.06032 * 8 6 5 36 36 H 1.09006 * 109.47388 * 229.05429 * 8 6 5 37 37 H 1.08995 * 109.46673 * 74.34611 * 10 9 8 38 38 H 1.08996 * 109.46640 * 194.35020 * 10 9 8 39 39 H 1.08998 * 109.46994 * 314.34989 * 10 9 8 40 40 H 1.09006 * 109.46770 * 53.44766 * 11 9 8 41 41 H 1.08998 * 109.46801 * 173.44241 * 11 9 8 42 42 H 1.08998 * 109.47620 * 293.44443 * 11 9 8 43 43 H 1.08997 * 109.47099 * 299.99024 * 12 9 8 44 44 H 1.08999 * 109.47720 * 59.99952 * 12 9 8 45 45 H 0.97000 * 119.99751 * 179.97438 * 16 15 13 46 46 H 1.09003 * 113.61073 * 203.74769 * 21 4 2 47 47 H 1.08997 * 113.61987 * 334.65537 * 21 4 2 48 48 H 1.08994 * 113.53448 * 270.80835 * 22 21 4 49 49 H 1.09004 * 113.73895 * 139.94408 * 22 21 4 50 50 H 1.09004 * 113.61122 * 220.08822 * 23 22 21 51 51 H 1.09001 * 113.69179 * 89.20162 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.5919 -0.1747 2.4897 6 7 0.1288 -0.0624 2.5580 7 6 -0.5037 -1.3875 2.5114 8 6 -0.2870 0.6775 3.7569 9 6 -0.8258 2.0499 3.3480 10 6 0.2107 2.7670 2.4805 11 6 -2.1213 1.8731 2.5533 12 6 -1.1056 2.8820 4.6010 13 6 -1.6357 4.2340 4.1982 14 1 -1.7602 4.4757 3.1529 15 6 -1.9618 5.1624 5.1640 16 7 -1.8097 4.8683 6.4368 17 14 -2.6195 6.8379 4.6647 18 1 -3.8766 6.6664 3.8931 19 1 -2.8909 7.6457 5.8808 20 1 -1.6132 7.5340 3.8232 21 6 1.7476 -2.2797 1.0285 22 6 3.0920 -2.3648 0.2830 23 6 3.4966 -1.0808 1.0263 24 1 -0.3633 0.6301 0.8118 25 1 -0.3634 0.3879 -0.9515 26 1 -0.3633 -1.0181 0.1399 27 1 3.0828 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8523 29 1 1.7043 1.8723 0.9233 30 1 2.0378 0.8136 2.6018 31 1 1.9441 -0.8251 3.2904 32 1 -1.5876 -1.2727 2.5052 33 1 -0.1884 -1.9090 1.6076 34 1 -0.2043 -1.9639 3.3867 35 1 0.5687 0.8059 4.4196 36 1 -1.0676 0.1205 4.2752 37 1 0.2245 2.3197 1.4866 38 1 -0.0500 3.8223 2.4006 39 1 1.1960 2.6695 2.9364 40 1 -2.8185 1.2618 3.1265 41 1 -2.5664 2.8495 2.3623 42 1 -1.9019 1.3820 1.6053 43 1 -1.8440 2.3713 5.2189 44 1 -0.1827 3.0081 5.1671 45 1 -2.0387 5.5216 7.1163 46 1 1.7484 -2.7927 1.9902 47 1 0.8876 -2.5380 0.4105 48 1 3.0008 -2.2349 -0.7953 49 1 3.6906 -3.2342 0.5555 50 1 4.0466 -0.3726 0.4066 51 1 3.9768 -1.2640 1.9875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189007302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:56 Heat of formation + Delta-G solvation = 28.192017 kcal Electronic energy + Delta-G solvation = -25076.020159 eV Core-core repulsion = 22011.241636 eV Total energy + Delta-G solvation = -3064.778523 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51636 -39.00795 -36.26216 -35.56346 -34.23682 -29.94713 -29.38170 -28.51576 -27.84113 -27.59164 -26.12222 -25.69983 -24.72721 -23.50143 -21.79349 -19.58748 -19.29880 -18.31642 -17.43827 -16.88987 -16.55433 -16.22095 -15.73332 -15.37598 -15.01600 -14.81283 -14.67314 -14.47193 -14.22550 -14.04310 -13.84254 -13.43615 -13.21599 -13.12988 -12.92944 -12.71943 -12.63592 -12.55500 -12.47528 -12.39136 -12.27410 -12.10772 -11.94172 -11.91898 -11.71642 -11.64053 -11.29095 -11.09455 -10.88400 -10.87305 -10.57224 -10.49653 -9.39285 -8.54030 -8.14094 -6.20785 1.40131 1.42163 1.49474 2.43193 2.93352 3.19644 3.20992 3.68830 3.89132 4.00024 4.06688 4.09838 4.24744 4.35593 4.44472 4.47447 4.54815 4.59553 4.68861 4.71659 4.74318 4.83296 4.87184 4.89349 4.92050 4.94283 5.02024 5.04528 5.08837 5.13041 5.14249 5.18405 5.23361 5.26624 5.34071 5.46963 5.49566 5.54250 5.54939 5.60472 5.62942 5.86521 5.89245 5.95335 6.12364 6.20143 6.32841 6.38037 6.45770 6.93931 7.46234 8.98021 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029439 B = 0.004288 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.898491 B = 6527.535041 C = 6754.590368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.511 5.511 3 C 0.010 3.990 4 C 0.088 3.912 5 C 0.038 3.962 6 N -0.519 5.519 7 C 0.007 3.993 8 C 0.071 3.929 9 C -0.043 4.043 10 C -0.113 4.113 11 C -0.111 4.111 12 C 0.041 3.959 13 C -0.512 4.512 14 H 0.065 0.935 15 C -0.003 4.003 16 N -0.938 5.938 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.269 1.269 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.128 4.128 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.021 0.979 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.067 0.933 43 H -0.018 1.018 44 H -0.021 1.021 45 H 0.259 0.741 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -14.953 -13.124 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 N -0.234 5.234 3 C -0.138 4.138 4 C -0.003 4.003 5 C -0.092 4.092 6 N -0.242 5.242 7 C -0.140 4.140 8 C -0.057 4.057 9 C -0.044 4.044 10 C -0.170 4.170 11 C -0.169 4.169 12 C 0.003 3.997 13 C -0.550 4.550 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.580 5.580 17 Si 0.779 3.221 18 H -0.193 1.193 19 H -0.213 1.213 20 H -0.194 1.194 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.166 4.166 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.040 0.960 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.000 1.000 44 H -0.003 1.003 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.163 -14.854 -13.809 21.863 hybrid contribution -0.450 1.223 2.099 2.471 sum 7.713 -13.631 -11.710 19.556 Atomic orbital electron populations 1.23002 0.87050 1.03076 1.01386 1.62206 1.08787 1.13191 1.39177 1.22588 1.00394 0.89608 1.01255 1.22273 0.96248 0.94127 0.87616 1.22854 0.88091 1.00474 0.97786 1.62308 1.07061 1.17311 1.37492 1.22983 0.99675 0.89487 1.01843 1.22173 0.98170 0.94834 0.90540 1.20397 0.95590 0.92944 0.95474 1.21822 0.96435 0.99421 0.99333 1.21615 0.95888 1.00148 0.99199 1.18993 0.93694 0.94135 0.92837 1.21569 1.41250 0.99322 0.92887 0.91717 1.25896 0.96560 1.02543 0.94962 1.70104 1.50604 1.36532 1.00735 0.85664 0.79219 0.79682 0.77494 1.19272 1.21343 1.19372 1.23132 0.98526 0.93787 1.00760 1.22658 0.96344 0.97091 0.99666 1.22973 0.94056 0.98584 1.00977 0.90088 0.93758 0.91588 0.91544 0.91765 0.94408 0.92087 0.94795 0.91822 0.88410 0.96027 0.95181 0.93132 0.90708 0.94559 0.95342 0.94871 0.94321 0.91455 0.99972 1.00257 0.93203 0.89706 0.90776 0.90144 0.90852 0.91297 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 7.99 127.69 1.02 1.08 16 2 N -0.51 -11.38 4.81 -895.67 -4.30 -15.69 16 3 C 0.01 0.22 8.86 127.69 1.13 1.35 16 4 C 0.09 1.80 0.27 4.05 0.00 1.80 16 5 C 0.04 0.92 3.50 86.30 0.30 1.23 16 6 N -0.52 -13.61 0.67 -922.44 -0.61 -14.22 16 7 C 0.01 0.16 7.37 127.69 0.94 1.11 16 8 C 0.07 2.40 4.26 86.31 0.37 2.77 16 9 C -0.04 -1.72 0.61 -52.18 -0.03 -1.75 16 10 C -0.11 -4.24 6.47 71.98 0.47 -3.78 16 11 C -0.11 -4.15 8.15 71.98 0.59 -3.56 16 12 C 0.04 2.14 4.04 29.85 0.12 2.26 16 13 C -0.51 -28.53 7.36 25.60 0.19 -28.34 16 14 H 0.06 3.47 5.81 -2.91 -0.02 3.45 16 15 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 16 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 17 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 C -0.12 -2.12 4.88 31.18 0.15 -1.97 16 22 C -0.12 -1.89 8.00 31.18 0.25 -1.64 16 23 C -0.13 -2.27 7.19 31.12 0.22 -2.04 16 24 H 0.08 2.16 1.99 -2.39 0.00 2.15 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.40 4.71 -2.39 -0.01 1.39 16 27 H 0.07 1.40 6.84 -2.38 -0.02 1.38 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.00 3.32 -2.39 -0.01 0.99 16 30 H 0.06 1.72 5.45 -2.39 -0.01 1.71 16 31 H 0.03 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.10 1.85 2.77 -2.39 -0.01 1.84 16 34 H 0.02 0.46 8.14 -2.39 -0.02 0.45 16 35 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 36 H 0.05 1.74 7.54 -2.38 -0.02 1.72 16 37 H 0.07 2.43 3.74 -2.39 -0.01 2.42 16 38 H 0.04 1.52 6.28 -2.39 -0.02 1.50 16 39 H 0.03 1.05 6.94 -2.39 -0.02 1.03 16 40 H 0.03 1.21 8.13 -2.38 -0.02 1.19 16 41 H 0.04 1.58 6.43 -2.39 -0.02 1.57 16 42 H 0.07 2.15 6.00 -2.39 -0.01 2.13 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.08 1.37 7.84 -2.39 -0.02 1.35 16 47 H 0.07 1.28 6.11 -2.39 -0.01 1.26 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.07 1.27 6.91 -2.39 -0.02 1.25 16 51 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 Total: -1.00 -61.45 348.06 4.48 -56.97 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.90 Total: 14.86 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 6.18 Total: -31.20 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.63 Total: -87.38 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -61.45 4.48 -56.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189007302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.164 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds