Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47314 * 2 1 4 4 C 1.46494 * 120.00143 * 270.00280 * 3 2 1 5 5 C 1.50706 * 109.47104 * 270.00076 * 4 3 2 6 6 H 1.07999 * 120.00091 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00301 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99518 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00400 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47181 * 59.99394 * 9 7 5 11 11 H 1.48498 * 109.47427 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46798 * 299.99793 * 9 7 5 13 13 C 1.34776 * 119.99424 * 90.00394 * 3 2 1 14 14 O 1.21288 * 119.99400 * 180.27773 * 13 3 2 15 15 C 1.50695 * 120.00546 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47324 * 180.02562 * 15 13 3 17 17 C 1.46900 * 111.00236 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.01507 * 43.50935 * 17 16 15 19 19 C 1.54264 * 110.03108 * 282.06953 * 17 16 15 20 20 C 1.54891 * 104.19679 * 217.10095 * 19 17 16 21 21 C 1.54888 * 102.74625 * 37.94617 * 20 19 17 22 22 C 1.53875 * 110.03571 * 164.90418 * 17 16 15 23 23 C 1.53002 * 110.03036 * 238.57061 * 22 17 16 24 24 C 1.53002 * 110.02710 * 359.97438 * 22 17 16 25 25 H 1.08996 * 109.47532 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46860 * 299.99865 * 1 2 3 27 27 H 1.08995 * 109.47199 * 59.99367 * 1 2 3 28 28 H 1.09000 * 109.46860 * 240.00134 * 2 1 3 29 29 H 1.09001 * 109.47631 * 120.00557 * 2 1 3 30 30 H 1.08998 * 109.47316 * 29.99409 * 4 3 2 31 31 H 1.08999 * 109.47513 * 150.00074 * 4 3 2 32 32 H 0.97006 * 119.99705 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47239 * 300.00274 * 15 13 3 34 34 H 1.08997 * 109.47318 * 59.99969 * 15 13 3 35 35 H 1.00901 * 111.00120 * 303.95211 * 16 15 13 36 36 H 1.08997 * 110.49293 * 335.78617 * 19 17 16 37 37 H 1.09008 * 110.48698 * 98.42714 * 19 17 16 38 38 H 1.08999 * 110.75754 * 279.63134 * 20 19 17 39 39 H 1.08997 * 110.75357 * 156.25900 * 20 19 17 40 40 H 1.08998 * 110.48782 * 203.38154 * 21 20 19 41 41 H 1.09004 * 110.48666 * 80.73162 * 21 20 19 42 42 H 1.08999 * 109.47017 * 59.99782 * 23 22 17 43 43 H 1.09000 * 109.47055 * 179.97438 * 23 22 17 44 44 H 1.08991 * 109.47185 * 299.99846 * 23 22 17 45 45 H 1.08998 * 109.47265 * 53.62604 * 24 22 17 46 46 H 1.09007 * 109.46625 * 173.62289 * 24 22 17 47 47 H 1.09001 * 109.47536 * 293.61945 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8774 8 7 3.3494 3.1266 -3.6175 9 14 5.9134 2.0963 -3.4171 10 1 6.1401 0.6396 -3.5955 11 1 6.1610 2.7964 -4.7031 12 1 6.8413 2.6185 -2.3820 13 6 2.2430 2.0164 1.1673 14 8 2.6426 3.1616 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5889 17 6 2.0759 1.5460 4.8802 18 1 2.4640 0.5278 4.8542 19 6 0.5668 1.5293 5.2001 20 6 0.5006 1.7543 6.7312 21 6 1.6361 2.7790 6.9755 22 6 2.7557 2.3406 6.0091 23 6 3.7628 1.4522 6.7422 24 6 3.4624 3.5692 5.4329 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0283 31 1 2.0956 3.1411 -1.1383 32 1 3.6754 3.5171 -4.4434 33 1 0.9433 1.0124 2.5299 34 1 2.6212 0.4185 2.5302 35 1 3.2575 2.5443 3.5222 36 1 0.0562 2.3356 4.6736 37 1 0.1317 0.5651 4.9371 38 1 0.6966 0.8255 7.2669 39 1 -0.4645 2.1712 7.0189 40 1 1.9814 2.7268 8.0080 41 1 1.2982 3.7872 6.7356 42 1 4.5215 1.1070 6.0398 43 1 4.2390 2.0238 7.5389 44 1 3.2459 0.5933 7.1698 45 1 2.7562 4.1494 4.8390 46 1 3.8433 4.1847 6.2480 47 1 4.2912 3.2490 4.8015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191861703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = -48.179903 kcal Electronic energy + Delta-G solvation = -23336.445799 eV Core-core repulsion = 20132.522447 eV Total energy + Delta-G solvation = -3203.923352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.78705 -38.74594 -35.27803 -34.16016 -32.73113 -32.33316 -30.05806 -28.61153 -27.55840 -26.88707 -25.25242 -23.86497 -22.97460 -22.18232 -20.55878 -18.77243 -18.09236 -16.50512 -16.32381 -15.98534 -15.63915 -15.25473 -15.00468 -14.42943 -14.12102 -13.75044 -13.51147 -13.31464 -13.22193 -13.10633 -12.81962 -12.36471 -12.06124 -11.93880 -11.86681 -11.66161 -11.42361 -11.24520 -11.14029 -11.10983 -10.90999 -10.84885 -10.68406 -10.61713 -10.55550 -10.51188 -10.45017 -10.10405 -9.61826 -8.82372 -8.40793 -8.20033 -7.59870 -6.01621 -4.06396 3.32654 3.37199 3.39389 3.52407 3.82223 4.38804 4.39649 4.47350 4.51338 4.82808 5.14922 5.18253 5.21884 5.24134 5.32183 5.33241 5.35625 5.39326 5.52711 5.57768 5.60556 5.61180 5.69967 5.74980 5.83395 5.84255 5.88053 5.89711 5.94437 6.02806 6.07052 6.16289 6.25569 6.26305 6.32409 6.46196 6.51739 7.02130 7.23023 7.49760 7.55611 7.61297 7.95367 8.27154 8.50040 8.93663 9.18449 9.58680 11.06330 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.003991 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.518342 B = 7013.473278 C = 7756.790303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.039 3.961 16 N -0.666 5.666 17 C 0.090 3.910 18 H 0.041 0.959 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.110 4.110 22 C -0.068 4.068 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.353 0.647 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 -6.914 19.468 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.406 6.406 15 C -0.093 4.093 16 N -0.302 5.302 17 C -0.020 4.020 18 H 0.059 0.941 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.068 4.068 23 C -0.197 4.197 24 C -0.199 4.199 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.177 0.823 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.505 -5.871 19.237 20.853 hybrid contribution 1.711 -0.968 -0.472 2.022 sum -3.794 -6.839 18.765 20.330 Atomic orbital electron populations 1.22218 0.96836 1.01290 1.02378 1.21390 0.93503 0.84373 1.02462 1.48245 1.64104 1.13170 1.07729 1.19232 0.96085 0.93675 0.78168 1.21404 0.96987 1.31866 1.06243 0.92662 1.24931 0.97778 0.94949 0.96417 1.69928 1.35685 1.33406 1.14352 0.86574 0.84897 0.78192 0.77827 1.20311 1.21168 1.20227 1.20216 0.78781 0.87094 0.84901 1.90667 1.45300 1.17614 1.86977 1.21931 1.02178 0.94405 0.90791 1.60521 1.32902 1.37075 0.99669 1.22225 0.95758 0.95154 0.88826 0.94089 1.22455 0.95603 1.01798 0.95611 1.22440 0.98553 0.98937 0.96191 1.22423 0.94836 0.99306 0.98243 1.21246 0.95275 0.95734 0.94567 1.21937 0.98471 0.99251 1.00074 1.21849 1.00616 0.96999 1.00418 0.92289 0.93032 0.92029 0.90065 0.91994 0.95131 0.93906 0.92695 0.88964 0.93325 0.82341 0.90187 0.92287 0.91912 0.91661 0.91952 0.91195 0.92839 0.92550 0.92734 0.90378 0.93122 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.80 2.46 -175.06 -0.43 -13.23 16 4 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 5 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.50 10.65 7.71 -10.99 -0.08 10.57 16 14 O -0.53 -13.55 15.78 5.55 0.09 -13.47 16 15 C 0.04 0.61 4.55 -4.98 -0.02 0.59 16 16 N -0.67 -9.82 4.88 -106.81 -0.52 -10.35 16 17 C 0.09 1.05 2.86 -66.60 -0.19 0.85 16 18 H 0.04 0.47 7.50 -51.93 -0.39 0.08 16 19 C -0.12 -1.23 5.99 -25.07 -0.15 -1.38 16 20 C -0.12 -1.08 6.91 -24.74 -0.17 -1.26 16 21 C -0.11 -1.02 5.90 -25.07 -0.15 -1.17 16 22 C -0.07 -0.70 0.94 -153.39 -0.14 -0.84 16 23 C -0.14 -1.26 8.14 37.16 0.30 -0.96 16 24 C -0.14 -1.62 7.09 37.16 0.26 -1.36 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.09 1.28 6.81 -51.93 -0.35 0.92 16 34 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 35 H 0.35 5.59 5.85 -39.29 -0.23 5.36 16 36 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 37 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.51 7.84 -51.93 -0.41 0.10 16 41 H 0.07 0.69 7.86 -51.93 -0.41 0.28 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 1.04 7.49 -51.93 -0.39 0.65 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.64 7.03 -51.93 -0.36 0.28 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -32.21 365.93 -8.69 -40.91 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.62 Total: 2.08 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.44 Total: -2.35 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.21 Total: -49.70 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.21 -8.69 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191861703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.272 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds