Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47487 * 2 1 4 4 C 1.46505 * 120.00150 * 269.99951 * 3 2 1 5 5 C 1.50692 * 109.47196 * 269.99814 * 4 3 2 6 6 H 1.08005 * 119.99805 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00176 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00158 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99869 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47221 * 89.99854 * 9 7 5 11 11 H 1.48501 * 109.47137 * 209.99976 * 9 7 5 12 12 H 1.48501 * 109.46939 * 329.99500 * 9 7 5 13 13 C 1.34778 * 119.99981 * 89.99696 * 3 2 1 14 14 O 1.21286 * 120.00056 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00166 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47094 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99825 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.01823 * 316.59901 * 17 16 15 19 19 C 1.54271 * 110.07347 * 78.01802 * 17 16 15 20 20 C 1.54886 * 104.19563 * 142.91644 * 19 17 16 21 21 C 1.54965 * 102.77896 * 322.08277 * 20 19 17 22 22 C 1.53877 * 110.03201 * 195.20693 * 17 16 15 23 23 C 1.52993 * 110.03018 * 359.95580 * 22 17 16 24 24 C 1.53008 * 110.03019 * 121.33416 * 22 17 16 25 25 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47051 * 300.00480 * 1 2 3 27 27 H 1.09005 * 109.46725 * 59.99894 * 1 2 3 28 28 H 1.09005 * 109.47061 * 239.99585 * 2 1 3 29 29 H 1.09005 * 109.46725 * 120.00106 * 2 1 3 30 30 H 1.09004 * 109.46467 * 29.99887 * 4 3 2 31 31 H 1.08998 * 109.47120 * 149.99344 * 4 3 2 32 32 H 0.96998 * 120.00146 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46993 * 59.99914 * 15 13 3 34 34 H 1.09000 * 109.47129 * 300.00231 * 15 13 3 35 35 H 1.00906 * 110.99879 * 56.04931 * 16 15 13 36 36 H 1.09000 * 110.48179 * 261.59925 * 19 17 16 37 37 H 1.09003 * 110.48614 * 24.23621 * 19 17 16 38 38 H 1.08996 * 110.75547 * 80.37234 * 20 19 17 39 39 H 1.08997 * 110.75416 * 203.55825 * 20 19 17 40 40 H 1.08995 * 110.47846 * 279.23640 * 21 20 19 41 41 H 1.08993 * 110.52966 * 156.56948 * 21 20 19 42 42 H 1.09003 * 109.46859 * 187.51336 * 23 22 17 43 43 H 1.08999 * 109.47297 * 307.50595 * 23 22 17 44 44 H 1.08995 * 109.47725 * 67.51283 * 23 22 17 45 45 H 1.08994 * 109.47234 * 299.31106 * 24 22 17 46 46 H 1.09006 * 109.46856 * 59.31318 * 24 22 17 47 47 H 1.08999 * 109.46945 * 179.30652 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1825 -3.2578 9 14 3.0129 3.4351 -3.9292 10 1 3.1165 4.8554 -3.5081 11 1 3.4059 3.3119 -5.3560 12 1 1.6132 2.9691 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3110 2.2058 3.5888 17 6 2.0774 1.5456 4.8802 18 1 1.1364 0.9961 4.8535 19 6 3.2411 0.5854 5.2021 20 6 3.4317 0.7194 6.7333 21 6 3.1901 2.2305 6.9778 22 6 2.0454 2.5913 6.0086 23 6 2.2680 3.9910 5.4325 24 6 0.7022 2.5331 6.7391 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1384 32 1 5.7172 2.5729 -4.0837 33 1 2.6228 0.4187 2.5299 34 1 0.9444 1.0114 2.5302 35 1 1.7859 3.0649 3.5221 36 1 2.9748 -0.4383 4.9389 37 1 4.1455 0.8924 4.6767 38 1 2.6954 0.1197 7.2682 39 1 4.4433 0.4351 7.0230 40 1 4.0863 2.8034 6.7397 41 1 2.8863 2.4070 8.0095 42 1 2.3768 4.7064 6.2477 43 1 3.1721 3.9938 4.8236 44 1 1.4138 4.2702 4.8157 45 1 -0.1026 2.7530 6.0378 46 1 0.5585 1.5364 7.1564 47 1 0.6941 3.2684 7.5437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191861713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -43.182657 kcal Electronic energy + Delta-G solvation = -23366.394559 eV Core-core repulsion = 20162.687903 eV Total energy + Delta-G solvation = -3203.706656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82239 -38.85189 -35.40170 -34.21496 -32.64645 -32.33745 -30.34038 -28.79468 -27.60356 -27.24225 -25.32198 -23.86172 -22.96114 -21.95928 -20.53528 -18.79681 -18.11522 -16.91117 -16.52333 -16.03720 -15.72743 -15.11681 -15.00593 -14.55936 -14.12543 -13.78621 -13.52860 -13.45713 -13.21872 -13.07828 -12.84419 -12.53278 -12.31130 -12.00784 -11.90731 -11.71977 -11.62569 -11.43602 -11.23706 -11.10125 -10.94093 -10.88172 -10.65639 -10.60952 -10.57329 -10.51068 -10.44656 -10.12824 -9.50095 -8.92838 -8.55475 -8.24670 -7.66986 -6.05072 -4.03360 3.31088 3.36901 3.38841 3.40716 3.72375 4.34970 4.38587 4.42543 4.48988 4.80608 5.05511 5.17151 5.20565 5.21921 5.26435 5.29341 5.32864 5.35401 5.44560 5.54778 5.57640 5.59480 5.65931 5.72132 5.74939 5.82132 5.87175 5.88400 5.92848 5.98635 6.04228 6.15234 6.15507 6.22956 6.34870 6.39375 6.44777 6.72201 6.96269 7.13419 7.41161 7.52009 7.65376 8.31561 8.51412 8.98063 9.06384 9.55460 11.08476 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.003914 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.424616 B = 7152.400786 C = 7420.347182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.507 3.493 14 O -0.528 6.528 15 C 0.041 3.959 16 N -0.665 5.665 17 C 0.091 3.909 18 H 0.041 0.959 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.111 4.111 22 C -0.068 4.068 23 C -0.142 4.142 24 C -0.139 4.139 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.352 0.648 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -4.550 18.910 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.404 6.404 15 C -0.091 4.091 16 N -0.301 5.301 17 C -0.019 4.019 18 H 0.059 0.941 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.068 4.068 23 C -0.199 4.199 24 C -0.197 4.197 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.174 0.826 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.872 -4.016 18.714 21.536 hybrid contribution -1.451 0.350 -0.734 1.664 sum -11.323 -3.666 17.979 21.562 Atomic orbital electron populations 1.22233 0.96926 1.01502 1.02092 1.21420 0.93242 0.84026 1.03066 1.47933 1.64479 1.13344 1.07015 1.19615 0.97247 0.93315 0.80121 1.21344 0.95377 1.32778 1.07013 0.90757 1.24857 0.94979 0.95824 0.97366 1.69899 1.15141 1.45075 1.23559 0.86854 0.81448 0.81648 0.79740 1.19931 1.21115 1.19144 1.20254 0.78463 0.87095 0.84895 1.90666 1.44679 1.18087 1.86958 1.21910 0.99648 0.97061 0.90515 1.60486 1.62947 1.06916 0.99703 1.22225 0.96820 0.94121 0.88690 0.94117 1.22467 0.99381 0.98114 0.95635 1.22445 1.01184 0.96306 0.96165 1.22434 0.98059 0.96162 0.98164 1.21247 0.95305 0.95683 0.94597 1.21854 1.03079 0.94507 1.00499 1.21938 0.96159 1.01533 1.00044 0.92020 0.93186 0.92231 0.89740 0.91504 0.95408 0.94710 0.92615 0.88713 0.93273 0.82551 0.92227 0.90013 0.91965 0.91588 0.91136 0.91942 0.93090 0.90225 0.93016 0.92939 0.92714 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.66 5.93 -4.05 -0.02 1.64 16 3 N -0.60 -12.28 2.46 -175.06 -0.43 -12.71 16 4 C 0.22 5.38 4.23 -5.19 -0.02 5.36 16 5 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 6 H 0.07 2.38 8.06 -52.48 -0.42 1.96 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.51 10.42 7.71 -10.98 -0.08 10.34 16 14 O -0.53 -13.15 15.78 5.55 0.09 -13.06 16 15 C 0.04 0.62 4.55 -4.98 -0.02 0.60 16 16 N -0.67 -9.63 4.86 -106.80 -0.52 -10.15 16 17 C 0.09 1.04 2.86 -66.59 -0.19 0.85 16 18 H 0.04 0.44 7.50 -51.93 -0.39 0.06 16 19 C -0.12 -1.29 6.00 -25.07 -0.15 -1.44 16 20 C -0.12 -1.12 6.91 -24.70 -0.17 -1.29 16 21 C -0.11 -1.03 5.91 -25.03 -0.15 -1.18 16 22 C -0.07 -0.68 0.94 -153.39 -0.14 -0.83 16 23 C -0.14 -1.57 7.08 37.15 0.26 -1.31 16 24 C -0.14 -1.19 8.14 37.16 0.30 -0.88 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 29 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 30 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 31 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.09 1.36 7.03 -51.93 -0.37 0.99 16 34 H 0.05 0.63 7.14 -51.93 -0.37 0.26 16 35 H 0.35 5.24 5.86 -39.29 -0.23 5.01 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 41 H 0.06 0.51 7.84 -51.93 -0.41 0.10 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.06 7.43 -51.93 -0.39 0.68 16 44 H 0.05 0.58 7.09 -51.93 -0.37 0.21 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -33.43 362.35 -8.34 -41.77 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.59 Total: 2.37 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.45 Total: -3.57 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.18 Total: -50.15 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.43 -8.34 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191861713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.416 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds