Wall clock time and date at job start Tue Mar 31 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47487 * 2 1 4 4 C 1.46505 * 120.00150 * 269.99951 * 3 2 1 5 5 C 1.50692 * 109.47196 * 269.99814 * 4 3 2 6 6 H 1.08005 * 119.99805 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00176 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00158 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99869 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47221 * 89.99854 * 9 7 5 11 11 H 1.48501 * 109.47137 * 209.99976 * 9 7 5 12 12 H 1.48501 * 109.46939 * 329.99500 * 9 7 5 13 13 C 1.34778 * 119.99981 * 89.99696 * 3 2 1 14 14 O 1.21286 * 120.00056 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00166 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47094 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99825 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.01823 * 316.59901 * 17 16 15 19 19 C 1.54271 * 110.07347 * 78.01802 * 17 16 15 20 20 C 1.54886 * 104.19563 * 142.91644 * 19 17 16 21 21 C 1.54965 * 102.77896 * 322.08277 * 20 19 17 22 22 C 1.53877 * 110.03201 * 195.20693 * 17 16 15 23 23 C 1.52993 * 110.03018 * 359.95580 * 22 17 16 24 24 C 1.53008 * 110.03019 * 121.33416 * 22 17 16 25 25 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47051 * 300.00480 * 1 2 3 27 27 H 1.09005 * 109.46725 * 59.99894 * 1 2 3 28 28 H 1.09005 * 109.47061 * 239.99585 * 2 1 3 29 29 H 1.09005 * 109.46725 * 120.00106 * 2 1 3 30 30 H 1.09004 * 109.46467 * 29.99887 * 4 3 2 31 31 H 1.08998 * 109.47120 * 149.99344 * 4 3 2 32 32 H 0.96998 * 120.00146 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46993 * 59.99914 * 15 13 3 34 34 H 1.09000 * 109.47129 * 300.00231 * 15 13 3 35 35 H 1.00906 * 110.99879 * 56.04931 * 16 15 13 36 36 H 1.09000 * 110.48179 * 261.59925 * 19 17 16 37 37 H 1.09003 * 110.48614 * 24.23621 * 19 17 16 38 38 H 1.08996 * 110.75547 * 80.37234 * 20 19 17 39 39 H 1.08997 * 110.75416 * 203.55825 * 20 19 17 40 40 H 1.08995 * 110.47846 * 279.23640 * 21 20 19 41 41 H 1.08993 * 110.52966 * 156.56948 * 21 20 19 42 42 H 1.09003 * 109.46859 * 187.51336 * 23 22 17 43 43 H 1.08999 * 109.47297 * 307.50595 * 23 22 17 44 44 H 1.08995 * 109.47725 * 67.51283 * 23 22 17 45 45 H 1.08994 * 109.47234 * 299.31106 * 24 22 17 46 46 H 1.09006 * 109.46856 * 59.31318 * 24 22 17 47 47 H 1.08999 * 109.46945 * 179.30652 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1825 -3.2578 9 14 3.0129 3.4351 -3.9292 10 1 3.1165 4.8554 -3.5081 11 1 3.4059 3.3119 -5.3560 12 1 1.6132 2.9691 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3110 2.2058 3.5888 17 6 2.0774 1.5456 4.8802 18 1 1.1364 0.9961 4.8535 19 6 3.2411 0.5854 5.2021 20 6 3.4317 0.7194 6.7333 21 6 3.1901 2.2305 6.9778 22 6 2.0454 2.5913 6.0086 23 6 2.2680 3.9910 5.4325 24 6 0.7022 2.5331 6.7391 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1384 32 1 5.7172 2.5729 -4.0837 33 1 2.6228 0.4187 2.5299 34 1 0.9444 1.0114 2.5302 35 1 1.7859 3.0649 3.5221 36 1 2.9748 -0.4383 4.9389 37 1 4.1455 0.8924 4.6767 38 1 2.6954 0.1197 7.2682 39 1 4.4433 0.4351 7.0230 40 1 4.0863 2.8034 6.7397 41 1 2.8863 2.4070 8.0095 42 1 2.3768 4.7064 6.2477 43 1 3.1721 3.9938 4.8236 44 1 1.4138 4.2702 4.8157 45 1 -0.1026 2.7530 6.0378 46 1 0.5585 1.5364 7.1564 47 1 0.6941 3.2684 7.5437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191861713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:31 Heat of formation + Delta-G solvation = -65.039357 kcal Electronic energy + Delta-G solvation = -23367.342337 eV Core-core repulsion = 20162.687903 eV Total energy + Delta-G solvation = -3204.654433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99811 -40.13834 -37.00935 -35.40743 -34.76734 -33.12759 -31.90938 -30.22318 -28.71648 -28.30729 -26.50064 -24.86532 -24.35517 -23.61880 -21.40206 -20.03279 -19.34802 -19.09061 -17.89186 -17.43807 -16.82228 -16.54149 -16.08348 -15.93467 -15.66919 -14.93181 -14.70679 -14.61852 -14.44444 -14.28252 -14.06141 -13.84673 -13.68871 -13.40196 -13.19154 -13.00179 -12.82599 -12.60177 -12.46970 -12.41026 -12.14626 -12.03567 -11.91737 -11.85072 -11.74612 -11.70931 -11.36747 -11.34497 -11.29974 -10.83699 -10.58126 -9.43575 -9.27378 -8.34371 -6.39350 1.31095 1.35761 1.43969 1.81572 2.25230 2.30383 2.99802 3.24946 3.57931 3.65710 3.77146 3.99648 4.09807 4.25452 4.37879 4.41926 4.42499 4.47468 4.49059 4.54060 4.58748 4.63327 4.78631 4.80163 4.83108 4.89987 4.96271 4.98809 5.00343 5.07023 5.10778 5.12857 5.18197 5.25858 5.36358 5.37222 5.43805 5.46752 5.48441 5.60974 5.66108 6.08745 6.25364 6.42074 6.62023 6.74915 7.21577 7.46144 8.82882 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.003914 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.424616 B = 7152.400786 C = 7420.347182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.536 4.536 6 H 0.026 0.974 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.496 3.504 14 O -0.583 6.583 15 C 0.057 3.943 16 N -0.685 5.685 17 C 0.091 3.909 18 H 0.057 0.943 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.067 4.067 23 C -0.138 4.138 24 C -0.135 4.135 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.347 0.653 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 -5.655 20.289 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.105 3.895 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.284 3.716 14 O -0.463 6.463 15 C -0.075 4.075 16 N -0.320 5.320 17 C -0.018 4.018 18 H 0.074 0.926 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.067 4.067 23 C -0.196 4.196 24 C -0.192 4.192 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.169 0.831 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.892 -5.184 20.118 24.450 hybrid contribution -0.408 0.646 -1.110 1.348 sum -13.300 -4.537 19.007 23.638 Atomic orbital electron populations 1.22145 0.93892 1.03643 1.01999 1.21759 0.95645 0.81189 1.03823 1.48065 1.64357 1.15185 1.05771 1.19256 0.94676 0.92933 0.82667 1.21576 0.97154 1.32064 1.06647 0.95558 1.25869 0.96745 0.97190 0.98960 1.70055 1.17465 1.46611 1.24499 0.85698 0.80427 0.78936 0.77770 1.20260 1.19869 1.16117 1.21294 0.77041 0.86720 0.86516 1.90629 1.47110 1.20687 1.87891 1.21802 1.01720 0.96380 0.87549 1.60486 1.63610 1.07079 1.00857 1.22351 0.97507 0.94494 0.87439 0.92554 1.22473 0.97971 0.98524 0.96901 1.22433 1.02026 0.96258 0.94724 1.22438 0.97213 0.96240 0.98929 1.21269 0.96747 0.94302 0.94408 1.21788 1.01387 0.95986 1.00397 1.21896 0.94672 1.02582 1.00039 0.88697 0.92150 0.93464 0.91023 0.88851 0.93433 0.96585 0.92276 0.87727 0.89884 0.83071 0.91079 0.92952 0.90074 0.91291 0.92686 0.90155 0.91948 0.93266 0.93375 0.93061 0.91488 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 10.24 71.98 0.74 -2.73 16 2 C 0.10 2.89 5.93 86.38 0.51 3.40 16 3 N -0.60 -24.79 2.46 -826.15 -2.03 -26.82 16 4 C 0.23 11.34 4.23 85.63 0.36 11.70 16 5 C -0.54 -32.42 9.94 25.60 0.25 -32.16 16 6 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 7 C 0.01 0.61 5.47 84.65 0.46 1.08 16 8 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 9 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.50 20.57 7.71 87.66 0.68 21.24 16 14 O -0.58 -30.20 15.78 -3.05 -0.05 -30.25 16 15 C 0.06 1.65 4.55 85.56 0.39 2.04 16 16 N -0.68 -19.60 4.86 -491.82 -2.39 -21.99 16 17 C 0.09 1.92 2.86 45.64 0.13 2.05 16 18 H 0.06 1.03 7.50 -2.38 -0.02 1.02 16 19 C -0.12 -2.47 6.00 31.67 0.19 -2.28 16 20 C -0.12 -1.86 6.91 31.91 0.22 -1.64 16 21 C -0.11 -1.88 5.91 31.70 0.19 -1.69 16 22 C -0.07 -1.23 0.94 -51.46 -0.05 -1.28 16 23 C -0.14 -3.04 7.08 71.98 0.51 -2.53 16 24 C -0.13 -1.89 8.14 71.98 0.59 -1.30 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.21 7.22 -2.39 -0.02 1.19 16 27 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 29 H 0.09 2.24 6.44 -2.38 -0.02 2.22 16 30 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 31 H 0.02 0.86 6.85 -2.39 -0.02 0.85 16 32 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 33 H 0.10 2.82 7.03 -2.39 -0.02 2.80 16 34 H 0.08 1.85 7.14 -2.39 -0.02 1.83 16 35 H 0.35 10.42 5.86 -89.69 -0.53 9.90 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 1.10 7.85 -2.39 -0.02 1.08 16 41 H 0.08 1.08 7.84 -2.39 -0.02 1.07 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 1.38 7.43 -2.39 -0.02 1.36 16 44 H 0.05 1.07 7.09 -2.39 -0.02 1.05 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -77.31 362.35 3.23 -74.08 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.34 Total: 22.61 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.17 Total: -4.11 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.12 Total: -109.61 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.05 Total: -30.25 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -77.31 3.23 -74.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191861713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.040 kcal (2) G-P(sol) polarization free energy of solvation -77.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds