Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46843 * 111.00237 * 2 1 4 4 C 1.53032 * 109.52364 * 185.83936 * 3 2 1 5 5 C 1.53123 * 109.27625 * 300.82013 * 4 3 2 6 6 C 1.52993 * 109.52623 * 297.68461 * 5 4 3 7 7 C 1.53004 * 109.52049 * 177.55840 * 5 4 3 8 8 N 1.46901 * 109.46916 * 180.12602 * 7 5 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47206 * 299.99787 * 10 9 8 12 12 C 1.53001 * 109.47323 * 60.00045 * 10 9 8 13 13 C 1.53004 * 109.47360 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47387 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 10 16 16 C 1.37874 * 119.99821 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99834 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46679 * 90.00592 * 18 16 14 20 20 H 1.48496 * 109.47358 * 209.99839 * 18 16 14 21 21 H 1.48495 * 109.47285 * 330.00458 * 18 16 14 22 22 C 1.53112 * 109.21318 * 57.62550 * 5 4 3 23 23 C 1.46846 * 110.99765 * 124.21074 * 2 1 3 24 24 H 1.09004 * 109.46562 * 59.99935 * 1 2 3 25 25 H 1.08996 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46795 * 300.00069 * 1 2 3 27 27 H 1.09001 * 109.46334 * 65.82186 * 3 2 1 28 28 H 1.08997 * 109.45238 * 305.85010 * 3 2 1 29 29 H 1.09004 * 109.50355 * 180.88229 * 4 3 2 30 30 H 1.08999 * 109.50488 * 60.76188 * 4 3 2 31 31 H 1.09009 * 109.47437 * 299.87583 * 6 5 4 32 32 H 1.09000 * 109.47153 * 59.87358 * 6 5 4 33 33 H 1.08993 * 109.47466 * 179.87609 * 6 5 4 34 34 H 1.09004 * 109.46889 * 60.12983 * 7 5 4 35 35 H 1.08995 * 109.47384 * 300.12623 * 7 5 4 36 36 H 1.00901 * 111.00067 * 303.95263 * 8 7 5 37 37 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 38 38 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 39 39 H 1.08999 * 109.47049 * 60.00315 * 11 10 9 40 40 H 1.09005 * 109.47151 * 179.97438 * 11 10 9 41 41 H 1.08998 * 109.47171 * 300.00432 * 11 10 9 42 42 H 1.08991 * 109.46963 * 60.00286 * 12 10 9 43 43 H 1.09005 * 109.47384 * 179.97438 * 12 10 9 44 44 H 1.08999 * 109.47105 * 299.99791 * 12 10 9 45 45 H 1.09001 * 109.46514 * 300.00105 * 13 10 9 46 46 H 1.08998 * 109.46924 * 59.99625 * 13 10 9 47 47 H 0.97004 * 119.99990 * 179.97438 * 17 16 14 48 48 H 1.09003 * 109.50468 * 62.31417 * 22 5 4 49 49 H 1.08997 * 109.50316 * 182.43451 * 22 5 4 50 50 H 1.09000 * 109.46237 * 294.17854 * 23 2 1 51 51 H 1.09000 * 109.46059 * 54.15671 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5368 1.0144 6 6 3.7972 1.2373 2.3360 7 6 5.6361 0.4447 0.8406 8 7 6.2108 -0.3229 1.9535 9 6 7.6697 -0.4317 1.8200 10 6 8.2306 -1.2363 2.9941 11 6 7.8900 -0.5279 4.3068 12 6 7.6128 -2.6360 2.9947 13 6 9.7502 -1.3491 2.8555 14 6 10.3028 -2.1411 4.0124 15 1 9.6368 -2.5260 4.7705 16 6 11.6585 -2.3753 4.1024 17 7 12.4694 -1.9071 3.1790 18 14 12.3436 -3.3565 5.5368 19 1 12.3698 -4.7984 5.1825 20 1 13.7227 -2.8958 5.8380 21 1 11.4828 -3.1555 6.7301 22 6 3.5183 -0.8716 1.0225 23 6 1.9952 -0.7708 1.1337 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7325 1.8608 0.9376 28 1 1.5635 1.9255 -0.8331 29 1 3.9100 2.3511 -0.1310 30 1 3.7814 0.8566 -1.0906 31 1 4.2232 2.2407 2.3285 32 1 2.7161 1.3025 2.4590 33 1 4.2232 0.6680 3.1621 34 1 6.0624 1.4479 0.8327 35 1 5.8643 -0.0545 -0.1011 36 1 5.9586 0.0841 2.8417 37 1 7.9123 -0.9367 0.8850 38 1 8.1098 0.5655 1.8192 39 1 6.8076 -0.4472 4.4059 40 1 8.2893 -1.1015 5.1434 41 1 8.3302 0.4692 4.3064 42 1 7.8555 -3.1406 2.0596 43 1 8.0128 -3.2094 3.8310 44 1 6.5303 -2.5553 3.0938 45 1 9.9932 -1.8535 1.9203 46 1 10.1900 -0.3518 2.8554 47 1 13.4233 -2.0716 3.2426 48 1 3.7815 -1.3847 0.0975 49 1 3.9101 -1.4294 1.8729 50 1 1.7324 -0.2709 2.0660 51 1 1.5635 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227329490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = -24.414111 kcal Electronic energy + Delta-G solvation = -23570.610421 eV Core-core repulsion = 20503.550726 eV Total energy + Delta-G solvation = -3067.059696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.95950 -37.59331 -35.69870 -33.13973 -31.87278 -30.98341 -28.58631 -27.22812 -26.58639 -26.29591 -25.30551 -23.98735 -23.24961 -22.15775 -21.18295 -18.41964 -17.81803 -16.30828 -16.02515 -15.40763 -15.24213 -15.01497 -14.70120 -14.68046 -14.27890 -13.85154 -13.53702 -13.24820 -12.96476 -12.58376 -12.53566 -12.38595 -12.15910 -11.97360 -11.78683 -11.75250 -11.67356 -11.54741 -11.15880 -10.95799 -10.85430 -10.74190 -10.53226 -10.44773 -10.42905 -10.25255 -10.19061 -10.02442 -9.64063 -8.97594 -8.79260 -8.47400 -8.29443 -7.98633 -5.93968 -3.93925 3.34777 3.41249 3.43911 3.74918 4.38862 4.51788 4.61989 4.70562 4.80855 5.01585 5.12436 5.13700 5.15589 5.30246 5.38066 5.41847 5.44257 5.51161 5.59061 5.62773 5.66069 5.68883 5.78790 5.84194 5.87581 5.95006 5.97606 6.02624 6.05739 6.14612 6.30838 6.36891 6.38751 6.44399 6.55544 6.70140 6.82867 6.86306 6.88151 6.91818 7.24555 7.28053 7.30203 7.47362 7.72359 7.76996 7.89511 8.06675 8.51262 9.11592 9.68731 11.17744 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.041423 B = 0.002965 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.788886 B = 9440.940763 C = 9642.519815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.057 3.943 4 C -0.106 4.106 5 C -0.058 4.058 6 C -0.148 4.148 7 C 0.069 3.931 8 N -0.684 5.684 9 C 0.070 3.930 10 C -0.058 4.058 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.095 4.095 23 C 0.052 3.948 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.022 0.978 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.336 0.664 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.258 0.742 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.033 0.967 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.259 6.656 -5.289 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.145 4.145 5 C -0.058 4.058 6 C -0.205 4.205 7 C -0.061 4.061 8 N -0.317 5.317 9 C -0.059 4.059 10 C -0.058 4.058 11 C -0.185 4.185 12 C -0.172 4.172 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.132 4.132 23 C -0.076 4.076 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.157 0.843 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.051 0.949 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.034 5.831 -6.053 23.583 hybrid contribution 0.572 0.846 1.659 1.948 sum -21.462 6.677 -4.395 22.902 Atomic orbital electron populations 1.22343 0.87734 1.01937 1.00317 1.61934 1.07118 1.13789 1.43923 1.22090 0.95750 0.89111 1.00166 1.21623 0.93958 0.99947 0.98942 1.20584 0.94761 0.95758 0.94740 1.21994 1.01161 1.00053 0.97319 1.21953 0.92768 0.95578 0.95771 1.60613 1.11550 1.54689 1.04814 1.22091 0.85653 0.98139 0.99983 1.20612 0.98517 0.94399 0.92264 1.21764 0.97959 0.99868 0.98958 1.21584 0.98440 0.96124 1.01057 1.19125 0.87433 0.96780 0.97084 1.21240 0.91836 1.32963 1.08356 0.92316 1.25018 0.97371 0.96164 0.96085 1.69967 1.03493 1.46185 1.34151 0.86669 0.78288 0.80411 0.83080 1.20782 1.21421 1.19965 1.21511 0.92320 0.95971 1.03440 1.22220 0.96672 0.97683 0.91003 0.91591 0.91460 0.95985 0.94796 0.91188 0.91726 0.90984 0.93055 0.92800 0.91996 0.95879 0.91217 0.84333 0.91677 0.96102 0.94934 0.91770 0.94196 0.94209 0.92827 0.93894 0.96701 0.96980 0.93193 0.91367 0.89953 0.94891 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.59 60.07 0.58 0.77 16 2 N -0.54 -5.18 4.91 -242.96 -1.19 -6.38 16 3 C 0.06 0.50 5.22 -3.84 -0.02 0.48 16 4 C -0.11 -1.00 4.88 -26.65 -0.13 -1.13 16 5 C -0.06 -0.60 0.59 -154.39 -0.09 -0.69 16 6 C -0.15 -1.46 7.57 37.15 0.28 -1.17 16 7 C 0.07 0.85 4.65 -3.82 -0.02 0.83 16 8 N -0.68 -9.69 4.98 -113.78 -0.57 -10.26 16 9 C 0.07 1.22 4.65 -3.82 -0.02 1.20 16 10 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 11 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 12 C -0.11 -2.22 8.07 37.16 0.30 -1.92 16 13 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 14 C -0.51 -13.90 7.65 -34.44 -0.26 -14.17 16 15 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.09 -1.02 4.69 -26.65 -0.13 -1.15 16 23 C 0.05 0.50 5.21 -3.83 -0.02 0.48 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.03 0.30 6.51 -51.93 -0.34 -0.04 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.05 0.50 4.93 -51.93 -0.26 0.25 16 33 H 0.06 0.65 6.58 -51.93 -0.34 0.30 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.34 4.63 4.82 -39.29 -0.19 4.45 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 40 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 44 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 50 H 0.03 0.32 6.52 -51.93 -0.34 -0.02 16 51 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -28.82 371.54 -9.88 -38.71 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -9.90 Total: -0.42 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 0.46 Total: -17.63 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -1.02 Total: -42.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.82 -9.88 -38.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227329490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.294 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds