Wall clock time and date at job start Tue Mar 31 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46845 * 110.99863 * 294.20589 * 5 4 2 7 7 C 1.53035 * 109.52480 * 174.16803 * 6 5 4 8 8 C 1.53119 * 109.27990 * 59.17570 * 7 6 5 9 9 C 1.53115 * 109.16243 * 302.34852 * 8 7 6 10 10 C 1.46850 * 110.99602 * 170.00121 * 5 4 2 11 11 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 12 12 C 1.46894 * 111.00220 * 274.99988 * 11 2 1 13 13 C 1.53001 * 109.47508 * 179.97438 * 12 11 2 14 14 C 1.53001 * 109.46929 * 300.00053 * 13 12 11 15 15 C 1.52998 * 109.46926 * 59.99706 * 13 12 11 16 16 C 1.52996 * 109.47238 * 179.97438 * 13 12 11 17 17 C 1.50706 * 109.46805 * 180.02562 * 16 13 12 18 18 H 1.07996 * 120.00044 * 359.97438 * 17 16 13 19 19 C 1.37882 * 119.99646 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99516 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47295 * 60.00256 * 21 19 17 23 23 H 1.48505 * 109.46771 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47348 * 300.00077 * 21 19 17 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 29 29 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 30 30 H 1.09005 * 109.46286 * 294.18079 * 6 5 4 31 31 H 1.08997 * 109.46422 * 54.14867 * 6 5 4 32 32 H 1.09003 * 109.49771 * 299.24069 * 7 6 5 33 33 H 1.08995 * 109.50835 * 179.12362 * 7 6 5 34 34 H 1.09002 * 109.51880 * 182.44327 * 8 7 6 35 35 H 1.08997 * 109.52175 * 62.25694 * 8 7 6 36 36 H 1.09003 * 109.50692 * 297.71558 * 9 8 7 37 37 H 1.09001 * 109.50489 * 177.59542 * 9 8 7 38 38 H 1.08997 * 109.46114 * 305.84939 * 10 5 4 39 39 H 1.09001 * 109.46691 * 65.81912 * 10 5 4 40 40 H 1.00900 * 110.99934 * 38.95495 * 11 2 1 41 41 H 1.08998 * 109.47346 * 299.99916 * 12 11 2 42 42 H 1.09007 * 109.47035 * 60.00148 * 12 11 2 43 43 H 1.09001 * 109.47181 * 60.00256 * 14 13 12 44 44 H 1.09004 * 109.47029 * 179.97438 * 14 13 12 45 45 H 1.08993 * 109.47399 * 299.99677 * 14 13 12 46 46 H 1.09002 * 109.47127 * 60.00210 * 15 13 12 47 47 H 1.09001 * 109.47298 * 179.97438 * 15 13 12 48 48 H 1.08995 * 109.47769 * 300.00481 * 15 13 12 49 49 H 1.08998 * 109.47509 * 299.99978 * 16 13 12 50 50 H 1.08999 * 109.47418 * 60.00588 * 16 13 12 51 51 H 0.97002 * 119.99982 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.1305 0.4993 -1.2659 7 6 5.6404 0.3642 -1.0561 8 6 6.2200 -0.5568 -2.1333 9 6 5.5168 -1.9152 -2.0646 10 6 4.0105 -1.7140 -2.2452 11 7 2.0197 -0.6925 1.1994 12 6 2.0825 0.2225 2.3468 13 6 2.5951 -0.5332 3.5745 14 6 1.6452 -1.6889 3.8952 15 6 3.9921 -1.0864 3.2861 16 6 2.6611 0.4200 4.7694 17 6 3.1666 -0.3243 5.9783 18 1 3.4154 -1.3725 5.9021 19 6 3.3104 0.3327 7.1820 20 7 3.0069 1.6089 7.2750 21 14 3.9363 -0.5901 8.6807 22 1 5.2923 -1.1270 8.4008 23 1 4.0005 0.3351 9.8405 24 1 3.0144 -1.7119 8.9921 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -1.7197 -1.2952 29 1 1.7516 -0.1583 -2.1370 30 1 3.9376 0.9369 -2.2454 31 1 3.7125 1.1431 -0.4920 32 1 5.8343 -0.0606 -0.0712 33 1 6.1071 1.3466 -1.1276 34 1 7.2882 -0.6905 -1.9619 35 1 6.0606 -0.1133 -3.1161 36 1 5.7088 -2.3759 -1.0955 37 1 5.8952 -2.5614 -2.8567 38 1 3.5053 -2.6778 -2.1825 39 1 3.8182 -1.2661 -3.2201 40 1 1.4496 -1.4979 1.4100 41 1 2.7589 1.0461 2.1182 42 1 1.0870 0.6162 2.5525 43 1 1.5986 -2.3680 3.0438 44 1 2.0106 -2.2276 4.7695 45 1 0.6499 -1.2949 4.1006 46 1 4.6689 -0.2630 3.0576 47 1 4.3576 -1.6244 4.1608 48 1 3.9456 -1.7653 2.4348 49 1 3.3380 1.2431 4.5406 50 1 1.6660 0.8144 4.9750 51 1 3.1084 2.0712 8.1217 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229689224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:44 Heat of formation + Delta-G solvation = -25.859937 kcal Electronic energy + Delta-G solvation = -23922.996278 eV Core-core repulsion = 20855.873886 eV Total energy + Delta-G solvation = -3067.122392 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.19086 -37.64555 -35.55013 -33.00968 -32.13217 -30.79509 -29.62285 -26.78595 -26.38239 -26.18966 -24.87079 -23.32609 -22.85989 -22.20136 -20.27753 -19.62606 -17.76466 -16.22526 -16.11490 -15.42051 -14.86391 -14.71737 -14.49039 -14.42147 -14.10829 -13.64095 -13.44892 -13.23008 -12.90260 -12.85710 -12.55772 -12.34360 -12.09473 -11.92015 -11.81570 -11.57991 -11.37359 -11.16480 -10.94588 -10.89144 -10.76326 -10.70790 -10.67541 -10.38721 -10.34890 -10.16869 -10.14261 -10.02532 -9.56651 -8.90772 -8.74939 -8.25489 -8.07480 -7.76652 -5.90380 -3.89938 3.38651 3.42919 3.45549 3.91977 4.50090 4.59376 4.77915 4.83103 4.92988 5.02207 5.19183 5.24844 5.34606 5.42583 5.45264 5.45641 5.53234 5.59186 5.63866 5.72515 5.77464 5.80719 5.87512 5.89827 5.93340 5.98903 6.04747 6.09445 6.16925 6.18418 6.21869 6.40106 6.42982 6.47822 6.64402 6.83073 6.93444 6.95691 7.21303 7.25651 7.32674 7.39612 7.41143 7.61952 7.77576 7.89993 7.96918 8.10757 8.56033 9.15502 9.72435 11.21342 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.003980 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.024303 B = 7034.125610 C = 7757.981717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.073 0.927 4 C 0.071 3.929 5 N -0.510 5.510 6 C 0.061 3.939 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.116 4.116 10 C 0.058 3.942 11 N -0.658 5.658 12 C 0.073 3.927 13 C -0.056 4.056 14 C -0.127 4.127 15 C -0.112 4.112 16 C 0.034 3.966 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.335 0.665 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.013 0.987 50 H 0.010 0.990 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 -4.471 -20.646 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.091 0.909 4 C -0.057 4.057 5 N -0.234 5.234 6 C -0.067 4.067 7 C -0.154 4.154 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.071 4.071 11 N -0.289 5.289 12 C -0.055 4.055 13 C -0.056 4.056 14 C -0.185 4.185 15 C -0.169 4.169 16 C -0.003 4.003 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.154 0.846 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.032 0.968 50 H 0.029 0.971 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.614 -4.452 -20.232 20.725 hybrid contribution -0.936 0.180 0.368 1.022 sum -0.322 -4.272 -19.865 20.321 Atomic orbital electron populations 1.22499 0.97705 1.01960 1.02029 1.21556 0.91534 0.97939 0.91598 0.90930 1.22075 0.87907 1.00196 0.95553 1.61727 1.04532 1.11115 1.45987 1.22040 0.95014 0.90532 0.99101 1.21563 0.94595 0.99148 1.00141 1.21561 0.99511 0.95978 0.98661 1.21560 0.94341 0.97056 1.02379 1.22055 0.95898 0.97109 0.91998 1.60530 1.56364 1.09167 1.02847 1.22081 0.98151 0.94974 0.90336 1.20587 0.94996 0.95944 0.94116 1.21752 0.98565 0.97953 1.00202 1.21547 0.95655 0.99846 0.99845 1.19113 0.96636 0.93711 0.90866 1.21223 1.42664 0.96272 0.94143 0.92381 1.25008 0.95940 0.94819 0.98812 1.69958 1.49385 1.08971 1.25592 0.86746 0.79467 0.79621 0.82682 1.20324 1.21499 1.20395 0.92252 0.92720 0.92546 0.91187 0.95618 0.96232 0.90499 0.90426 0.92100 0.92121 0.92902 0.90737 0.92207 0.91181 0.96005 0.84616 0.92047 0.96512 0.94745 0.91965 0.94367 0.94461 0.93222 0.93394 0.96826 0.97140 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.16 37.16 0.34 -1.62 16 2 C 0.08 1.02 2.37 -67.71 -0.16 0.86 16 3 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 4 C 0.07 0.78 4.66 -3.82 -0.02 0.77 16 5 N -0.51 -6.04 4.38 -234.67 -1.03 -7.06 16 6 C 0.06 0.71 5.29 -3.84 -0.02 0.69 16 7 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 8 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 9 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 10 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 11 N -0.66 -9.45 5.19 -106.73 -0.55 -10.00 16 12 C 0.07 1.28 4.44 -3.83 -0.02 1.26 16 13 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 15 C -0.11 -2.22 8.06 37.16 0.30 -1.92 16 16 C 0.03 0.88 4.04 -27.88 -0.11 0.76 16 17 C -0.50 -14.00 7.65 -34.44 -0.26 -14.27 16 18 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 21 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 0.75 7.99 -51.93 -0.41 0.33 16 29 H 0.03 0.27 8.12 -51.93 -0.42 -0.16 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.99 6.32 -51.93 -0.33 0.66 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.33 4.76 6.51 -39.29 -0.26 4.50 16 41 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 42 H 0.02 0.30 7.44 -51.93 -0.39 -0.09 16 43 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 44 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 1.06 6.62 -51.93 -0.34 0.72 16 48 H 0.05 0.88 7.60 -51.93 -0.39 0.49 16 49 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -28.92 378.58 -10.65 -39.57 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -10.13 Total: 0.27 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -0.35 Total: -18.86 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.85 Total: -43.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.92 -10.65 -39.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229689224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.708 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds