Wall clock time and date at job start Tue Mar 31 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46988 * 90.00142 * 9 7 5 11 11 H 1.48502 * 109.47218 * 209.99962 * 9 7 5 12 12 H 1.48501 * 109.47118 * 330.00116 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.47182 * 179.72734 * 15 13 3 17 17 C 1.46840 * 111.00229 * 66.04782 * 16 15 13 18 18 C 1.53040 * 109.52568 * 174.16075 * 17 16 15 19 19 C 1.53112 * 109.27826 * 59.17731 * 18 17 16 20 20 H 1.09001 * 109.52641 * 62.25034 * 19 18 17 21 21 C 1.53005 * 109.52305 * 182.44397 * 19 18 17 22 22 C 1.53119 * 109.16328 * 302.34728 * 19 18 17 23 23 H 1.08996 * 109.50917 * 177.59993 * 22 19 18 24 24 C 1.53004 * 109.50254 * 297.67753 * 22 19 18 25 25 C 1.46844 * 111.00044 * 301.83447 * 16 15 13 26 26 H 1.09000 * 109.46885 * 300.00184 * 1 2 3 27 27 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 28 28 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 30 30 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 31 31 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 32 32 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 33 33 H 0.97007 * 120.00044 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 35 35 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 36 36 H 1.09003 * 109.46512 * 294.17606 * 17 16 15 37 37 H 1.08997 * 109.46593 * 54.15320 * 17 16 15 38 38 H 1.09003 * 109.50072 * 179.11825 * 18 17 16 39 39 H 1.09002 * 109.50058 * 299.19299 * 18 17 16 40 40 H 1.08994 * 109.47256 * 59.99829 * 21 19 18 41 41 H 1.08998 * 109.47480 * 180.02562 * 21 19 18 42 42 H 1.08999 * 109.46696 * 299.99816 * 21 19 18 43 43 H 1.09007 * 109.47253 * 59.99413 * 24 22 19 44 44 H 1.08997 * 109.47520 * 180.02562 * 24 22 19 45 45 H 1.09000 * 109.47021 * 299.99797 * 24 22 19 46 46 H 1.09002 * 109.46704 * 305.85754 * 25 16 15 47 47 H 1.09002 * 109.46529 * 65.82749 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 3.3494 3.1253 -3.6181 9 14 5.9134 2.0951 -3.4175 10 1 5.9762 0.8739 -4.2601 11 1 6.3926 3.2621 -4.2008 12 1 6.7737 1.9154 -2.2205 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3160 2.2040 3.5888 17 6 1.3951 3.3471 3.6298 18 6 1.6691 4.1799 4.8842 19 6 3.1196 4.6697 4.8589 20 1 3.2712 5.3147 3.9934 21 6 3.4175 5.4519 6.1397 22 6 4.0564 3.4620 4.7673 23 1 5.0888 3.8061 4.7060 24 6 3.8830 2.5857 6.0095 25 6 3.7131 2.6501 3.5163 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5819 1.6876 -2.0284 32 1 2.0958 3.1409 -1.1385 33 1 3.6753 3.5152 -4.4445 34 1 0.9422 1.0169 2.5319 35 1 2.6175 0.4159 2.5281 36 1 1.5434 3.9650 2.7442 37 1 0.3673 2.9849 3.6519 38 1 0.9959 5.0369 4.9062 39 1 1.5068 3.5667 5.7707 40 1 3.2681 4.8046 7.0038 41 1 4.4500 5.8006 6.1207 42 1 2.7465 6.3082 6.2068 43 1 2.8507 2.2408 6.0697 44 1 4.5504 1.7264 5.9441 45 1 4.1247 3.1659 6.9001 46 1 4.3690 1.7816 3.4558 47 1 3.8507 3.2712 2.6312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246064901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:16 Heat of formation + Delta-G solvation = -43.533443 kcal Electronic energy + Delta-G solvation = -23968.136853 eV Core-core repulsion = 20764.414986 eV Total energy + Delta-G solvation = -3203.721867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09916 -38.36656 -35.50474 -34.33241 -32.78827 -31.54217 -30.10813 -29.34788 -27.54197 -26.53859 -25.04718 -23.04486 -22.57567 -22.45625 -21.37397 -18.61144 -18.11616 -16.58767 -16.30869 -16.11360 -15.18431 -14.98666 -14.67686 -14.35469 -14.27794 -13.96899 -13.71033 -13.37334 -13.02524 -12.79588 -12.58217 -12.20826 -12.13073 -11.97134 -11.77944 -11.74009 -11.58215 -11.33419 -11.21545 -10.95696 -10.91925 -10.73331 -10.58562 -10.52272 -10.27737 -10.11182 -9.98804 -9.92537 -9.65232 -9.50054 -8.44986 -7.65753 -7.61712 -6.05651 -4.10411 3.28383 3.34201 3.36344 3.41647 3.97077 4.19992 4.43614 4.85048 4.93278 4.96642 5.13707 5.28814 5.29269 5.34372 5.46897 5.51984 5.56538 5.62578 5.68761 5.71728 5.72785 5.79194 5.83291 5.86965 5.94974 6.02845 6.04061 6.08975 6.19141 6.22299 6.26296 6.36933 6.40939 6.47483 6.48306 6.58290 6.72023 7.02991 7.26316 7.34990 7.43783 7.55499 7.90786 8.22704 8.42590 8.88932 9.08410 9.54871 11.02344 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.004918 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.054911 B = 5691.622396 C = 6552.885044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.474 3.526 14 O -0.539 6.539 15 C 0.033 3.967 16 N -0.511 5.511 17 C 0.041 3.959 18 C -0.106 4.106 19 C -0.089 4.089 20 H 0.069 0.931 21 C -0.146 4.146 22 C -0.080 4.080 23 H 0.066 0.934 24 C -0.139 4.139 25 C 0.036 3.964 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 -3.347 16.544 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.260 3.740 14 O -0.419 6.419 15 C -0.099 4.099 16 N -0.234 5.234 17 C -0.087 4.087 18 C -0.144 4.144 19 C -0.108 4.108 20 H 0.087 0.913 21 C -0.203 4.203 22 C -0.099 4.099 23 H 0.085 0.915 24 C -0.197 4.197 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.119 -2.897 16.801 17.539 hybrid contribution 1.055 0.154 -1.336 1.709 sum -3.065 -2.743 15.464 16.002 Atomic orbital electron populations 1.22209 0.96785 1.01425 1.02235 1.21414 0.93509 0.84261 1.02670 1.48422 1.63107 1.13177 1.08025 1.19239 0.96180 0.93566 0.78403 1.21413 0.96919 1.31789 1.06201 0.92594 1.24929 0.97804 0.94922 0.96417 1.69935 1.35693 1.33489 1.14293 0.86515 0.84735 0.77688 0.78592 1.20628 1.21095 1.19933 1.21672 0.78647 0.87441 0.86232 1.90554 1.46032 1.18437 1.86827 1.22323 1.02957 0.97015 0.87610 1.62419 1.03853 1.17852 1.39259 1.22227 0.95376 0.92484 0.98626 1.21608 0.95923 0.98645 0.98218 1.21164 0.95226 0.96332 0.98060 0.91257 1.21870 1.01012 0.99627 0.97805 1.21140 0.98449 0.94993 0.95311 0.91545 1.21820 1.02646 0.98761 0.96424 1.22464 0.88482 0.99501 0.98684 0.93088 0.92148 0.92136 0.90045 0.91653 0.95236 0.94091 0.92749 0.88716 0.88575 0.91856 0.91897 0.92198 0.91474 0.92472 0.93035 0.93154 0.91370 0.93552 0.93607 0.91915 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.66 5.93 -4.05 -0.02 1.64 16 3 N -0.60 -12.31 2.46 -175.06 -0.43 -12.74 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 5 C -0.52 -14.83 9.39 -34.44 -0.32 -15.16 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.47 9.50 7.09 -10.98 -0.08 9.43 16 14 O -0.54 -12.85 11.21 5.56 0.06 -12.79 16 15 C 0.03 0.49 4.42 -4.98 -0.02 0.47 16 16 N -0.51 -7.59 4.14 -236.12 -0.98 -8.56 16 17 C 0.04 0.60 5.09 -3.84 -0.02 0.58 16 18 C -0.11 -1.32 5.02 -26.65 -0.13 -1.45 16 19 C -0.09 -1.14 2.57 -90.50 -0.23 -1.37 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 21 C -0.15 -1.52 8.80 37.16 0.33 -1.19 16 22 C -0.08 -1.06 2.77 -90.54 -0.25 -1.31 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 C -0.14 -1.59 8.34 37.16 0.31 -1.28 16 25 C 0.04 0.57 4.41 -3.83 -0.02 0.56 16 26 H 0.05 0.64 7.23 -51.93 -0.38 0.26 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 1.21 7.43 -51.93 -0.39 0.82 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.09 1.23 7.12 -51.93 -0.37 0.87 16 35 H 0.10 1.32 7.39 -51.93 -0.38 0.94 16 36 H 0.06 1.15 6.00 -51.93 -0.31 0.84 16 37 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.78 6.59 -51.93 -0.34 0.44 16 40 H 0.06 0.55 6.37 -51.93 -0.33 0.22 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.82 6.02 -51.93 -0.31 0.50 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.46 6.39 -51.93 -0.33 0.13 16 46 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.08 1.63 5.36 -51.93 -0.28 1.35 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -31.25 352.53 -8.89 -40.14 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.36 Total: 0.58 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.21 Total: -2.91 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.67 Total: -47.24 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.06 Total: -12.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.25 -8.89 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246064901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.397 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds