Wall clock time and date at job start Tue Mar 31 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47289 * 2 1 4 4 C 1.46501 * 120.00074 * 270.00312 * 3 2 1 5 5 C 1.50704 * 109.47159 * 269.99815 * 4 3 2 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00227 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99635 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99900 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47418 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47129 * 119.99987 * 9 7 5 12 12 H 1.48504 * 109.47226 * 239.99631 * 9 7 5 13 13 C 1.34778 * 120.00224 * 90.00320 * 3 2 1 14 14 O 1.21282 * 120.00297 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99613 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46833 * 180.02562 * 15 13 3 17 17 C 1.46847 * 111.00076 * 293.95050 * 16 15 13 18 18 C 1.53032 * 109.52562 * 185.84036 * 17 16 15 19 19 C 1.53117 * 109.28126 * 300.82274 * 18 17 16 20 20 H 1.09002 * 109.52261 * 297.74975 * 19 18 17 21 21 C 1.52999 * 109.52354 * 177.62191 * 19 18 17 22 22 C 1.53119 * 109.15738 * 57.65434 * 19 18 17 23 23 H 1.08999 * 109.50798 * 62.28956 * 22 19 18 24 24 C 1.53006 * 109.50212 * 182.40507 * 22 19 18 25 25 C 1.46840 * 111.00497 * 58.16457 * 16 15 13 26 26 H 1.09000 * 109.47248 * 60.00117 * 1 2 3 27 27 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46844 * 299.99889 * 1 2 3 29 29 H 1.09002 * 109.46791 * 239.99622 * 2 1 3 30 30 H 1.09003 * 109.47554 * 120.00300 * 2 1 3 31 31 H 1.08995 * 109.47091 * 29.99466 * 4 3 2 32 32 H 1.09005 * 109.47268 * 150.00281 * 4 3 2 33 33 H 0.97003 * 119.99899 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47303 * 60.00792 * 15 13 3 35 35 H 1.08997 * 109.47357 * 299.99945 * 15 13 3 36 36 H 1.09004 * 109.45626 * 65.82689 * 17 16 15 37 37 H 1.08997 * 109.45530 * 305.85452 * 17 16 15 38 38 H 1.08999 * 109.50437 * 180.88272 * 18 17 16 39 39 H 1.09004 * 109.53700 * 60.79091 * 18 17 16 40 40 H 1.09000 * 109.47273 * 60.13095 * 21 19 18 41 41 H 1.09004 * 109.47320 * 180.13008 * 21 19 18 42 42 H 1.09001 * 109.47399 * 300.12849 * 21 19 18 43 43 H 1.08997 * 109.47114 * 60.00125 * 24 22 19 44 44 H 1.09004 * 109.47157 * 179.97438 * 24 22 19 45 45 H 1.09000 * 109.47140 * 300.00057 * 24 22 19 46 46 H 1.09000 * 109.46098 * 294.17938 * 25 16 15 47 47 H 1.09000 * 109.46247 * 54.14549 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 3.3496 3.1273 -3.6170 9 14 5.9133 2.0963 -3.4171 10 1 6.6007 1.2403 -2.4171 11 1 5.9203 1.4182 -4.7382 12 1 6.6216 3.3971 -3.5247 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2064 3.5888 17 6 3.7454 2.5100 3.6276 18 6 4.0616 3.3277 4.8820 19 6 3.2474 4.6242 4.8589 20 1 3.5362 5.2204 3.9933 21 6 3.5144 5.4185 6.1390 22 6 1.7579 4.2806 4.7696 23 1 1.4606 3.7176 5.6544 24 6 0.9401 5.5710 4.6856 25 6 1.5085 3.4353 3.5185 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5817 1.6876 -2.0283 32 1 2.0956 3.1410 -1.1384 33 1 3.6757 3.5179 -4.4429 34 1 2.6213 0.4186 2.5302 35 1 0.9433 1.0125 2.5299 36 1 4.0195 3.0831 2.7418 37 1 4.3127 1.5795 3.6481 38 1 5.1250 3.5662 4.9024 39 1 3.8012 2.7500 5.7689 40 1 4.5755 5.6598 6.2022 41 1 2.9326 6.3401 6.1227 42 1 3.2253 4.8216 7.0040 43 1 1.2370 6.1322 3.7997 44 1 -0.1200 5.3258 4.6217 45 1 1.1209 6.1743 5.5753 46 1 1.7930 4.0040 2.6332 47 1 0.4512 3.1769 3.4597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246064903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:18 Heat of formation + Delta-G solvation = -47.481246 kcal Electronic energy + Delta-G solvation = -23883.160352 eV Core-core repulsion = 20679.267295 eV Total energy + Delta-G solvation = -3203.893056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02578 -38.25378 -35.50388 -34.40802 -32.79748 -31.98483 -30.10773 -29.31770 -27.47841 -26.49688 -25.02286 -23.05043 -22.53570 -22.02019 -21.09624 -19.45732 -18.33647 -16.60273 -16.31666 -15.86694 -15.24687 -14.81886 -14.62143 -14.30581 -14.25483 -14.05858 -13.78395 -13.38396 -13.08116 -12.84526 -12.48695 -12.20663 -12.04328 -11.96426 -11.85931 -11.72018 -11.52085 -11.49676 -11.25535 -11.12091 -10.90320 -10.71827 -10.58641 -10.53035 -10.37724 -10.14419 -9.97975 -9.94468 -9.61979 -9.52947 -8.45568 -7.71249 -7.58743 -6.06068 -4.10721 3.27802 3.34000 3.36689 3.41299 3.96615 4.17072 4.43356 4.83250 4.91148 4.96067 5.13094 5.21842 5.28815 5.33826 5.47796 5.53056 5.58988 5.63006 5.67137 5.69533 5.73564 5.76405 5.81063 5.82191 5.91536 5.97466 6.04040 6.09943 6.15119 6.21801 6.24906 6.32529 6.35689 6.42762 6.48006 6.50794 6.73275 7.02919 7.25830 7.34008 7.43754 7.55328 7.90545 8.22420 8.42251 8.88830 9.08090 9.54602 11.02008 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.004897 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.781913 B = 5715.891488 C = 6501.199850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.474 3.526 14 O -0.539 6.539 15 C 0.033 3.967 16 N -0.515 5.515 17 C 0.040 3.960 18 C -0.105 4.105 19 C -0.089 4.089 20 H 0.070 0.930 21 C -0.145 4.145 22 C -0.078 4.078 23 H 0.069 0.931 24 C -0.147 4.147 25 C 0.036 3.964 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -2.549 16.141 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.260 3.740 14 O -0.418 6.418 15 C -0.099 4.099 16 N -0.238 5.238 17 C -0.088 4.088 18 C -0.143 4.143 19 C -0.108 4.108 20 H 0.088 0.912 21 C -0.202 4.202 22 C -0.097 4.097 23 H 0.087 0.913 24 C -0.205 4.205 25 C -0.091 4.091 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.480 -2.086 16.396 17.125 hybrid contribution 1.123 0.094 -1.302 1.722 sum -3.357 -1.993 15.094 15.591 Atomic orbital electron populations 1.22213 0.96769 1.01438 1.02255 1.21415 0.93521 0.84251 1.02670 1.48419 1.63094 1.13186 1.08014 1.19247 0.96204 0.93582 0.78401 1.21456 0.96895 1.31732 1.06194 0.92543 1.24932 0.97810 0.94935 0.96421 1.69943 1.35592 1.33500 1.14355 0.86460 0.84689 0.78046 0.78331 1.19834 1.20945 1.20900 1.21659 0.78602 0.87486 0.86225 1.90553 1.46295 1.18169 1.86821 1.22322 1.03089 0.96884 0.87604 1.62430 1.06210 1.15704 1.39457 1.22250 0.88232 0.99627 0.98706 1.21576 0.98981 0.95694 0.98075 1.21199 0.95085 0.96325 0.98188 0.91152 1.21859 1.01036 0.99891 0.97461 1.21114 0.94603 0.95593 0.98366 0.91251 1.21837 0.99549 0.97352 1.01731 1.22484 0.96602 0.91052 0.98962 0.92132 0.92126 0.93071 0.90028 0.91665 0.95209 0.94066 0.92801 0.88623 0.88615 0.91564 0.91750 0.91985 0.91820 0.93072 0.92668 0.92968 0.92582 0.92954 0.92586 0.90066 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.05 -0.02 1.64 16 3 N -0.60 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.25 6.37 5.16 -5.19 -0.03 6.35 16 5 C -0.52 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.47 9.56 7.09 -10.98 -0.08 9.48 16 14 O -0.54 -12.88 11.20 5.56 0.06 -12.82 16 15 C 0.03 0.50 4.41 -4.98 -0.02 0.48 16 16 N -0.52 -7.86 4.86 -236.12 -1.15 -9.01 16 17 C 0.04 0.62 5.09 -3.84 -0.02 0.60 16 18 C -0.11 -1.37 5.38 -26.65 -0.14 -1.51 16 19 C -0.09 -1.14 2.29 -90.50 -0.21 -1.35 16 20 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.15 -1.51 8.90 37.16 0.33 -1.18 16 22 C -0.08 -1.00 2.39 -90.54 -0.22 -1.22 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 C -0.15 -1.69 8.90 37.16 0.33 -1.36 16 25 C 0.04 0.56 4.26 -3.84 -0.02 0.54 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.10 1.32 7.32 -51.93 -0.38 0.94 16 35 H 0.10 1.28 7.18 -51.93 -0.37 0.90 16 36 H 0.07 1.28 6.00 -51.93 -0.31 0.97 16 37 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.54 6.51 -51.93 -0.34 0.20 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 46 H 0.08 1.54 5.36 -51.93 -0.28 1.27 16 47 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -31.40 357.39 -9.11 -40.51 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.57 Total: 0.59 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.13 Total: -2.87 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.84 Total: -47.70 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.06 Total: -12.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.40 -9.11 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246064903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.969 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds