Wall clock time and date at job start Tue Mar 31 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.47161 * 2 1 4 4 C 1.46501 * 120.00051 * 269.99689 * 3 2 1 5 5 C 1.50705 * 109.47160 * 270.00040 * 4 3 2 6 6 H 1.08003 * 119.99866 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99985 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99701 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00090 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46989 * 60.00270 * 9 7 5 11 11 H 1.48501 * 109.47370 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47017 * 300.00009 * 9 7 5 13 13 C 1.34781 * 119.99964 * 90.00157 * 3 2 1 14 14 O 1.21281 * 120.00035 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99638 * 0.27208 * 13 3 2 16 16 N 1.46908 * 109.46716 * 179.72900 * 15 13 3 17 17 C 1.46846 * 110.99598 * 288.14628 * 16 15 13 18 18 C 1.53042 * 109.51679 * 174.16293 * 17 16 15 19 19 C 1.53114 * 109.27911 * 59.17960 * 18 17 16 20 20 C 1.53112 * 109.16374 * 302.34216 * 19 18 17 21 21 H 1.09008 * 109.50316 * 297.71337 * 20 19 18 22 22 C 1.52998 * 109.53826 * 177.61530 * 20 19 18 23 23 C 1.46848 * 110.99965 * 163.93902 * 16 15 13 24 24 H 1.08998 * 109.46660 * 65.82677 * 23 16 15 25 25 C 1.53005 * 109.46106 * 305.85231 * 23 16 15 26 26 H 1.09003 * 109.46881 * 59.99725 * 1 2 3 27 27 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47362 * 300.00126 * 1 2 3 29 29 H 1.09001 * 109.47362 * 239.99874 * 2 1 3 30 30 H 1.08999 * 109.47137 * 119.99825 * 2 1 3 31 31 H 1.08997 * 109.46652 * 29.99948 * 4 3 2 32 32 H 1.08998 * 109.47077 * 150.00219 * 4 3 2 33 33 H 0.97003 * 119.99867 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47327 * 299.72341 * 15 13 3 35 35 H 1.08999 * 109.47304 * 59.72745 * 15 13 3 36 36 H 1.08996 * 109.46566 * 294.17657 * 17 16 15 37 37 H 1.08994 * 109.46163 * 54.15041 * 17 16 15 38 38 H 1.09001 * 109.50624 * 299.23217 * 18 17 16 39 39 H 1.09003 * 109.53384 * 179.14152 * 18 17 16 40 40 H 1.09010 * 109.52066 * 182.43402 * 19 18 17 41 41 H 1.09000 * 109.57294 * 62.28538 * 19 18 17 42 42 H 1.09001 * 109.47499 * 300.17936 * 22 20 19 43 43 H 1.08999 * 109.47076 * 60.17841 * 22 20 19 44 44 H 1.09001 * 109.47137 * 180.17805 * 22 20 19 45 45 H 1.09004 * 109.46809 * 66.82520 * 25 23 16 46 46 H 1.08996 * 109.47057 * 186.82200 * 25 23 16 47 47 H 1.08996 * 109.47571 * 306.82312 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1248 -3.6185 9 14 5.9132 2.0955 -3.4174 10 1 6.1403 0.6386 -3.5947 11 1 6.1605 2.7946 -4.7040 12 1 6.8411 2.6189 -2.3828 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9977 1.3040 2.4723 16 7 2.3209 2.2023 3.5889 17 6 3.7719 2.3962 3.7051 18 6 4.0629 3.4462 4.7799 19 6 3.4833 2.9754 6.1166 20 6 1.9799 2.7344 5.9556 21 1 1.4875 3.6703 5.6915 22 6 1.4025 2.2067 7.2705 23 6 1.7492 1.7051 4.8468 24 1 2.2301 0.7653 5.1180 25 6 0.2469 1.4760 4.6685 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6877 -2.0283 32 1 2.0956 3.1411 -1.1384 33 1 3.6748 3.5147 -4.4448 34 1 0.9499 1.0099 2.5343 35 1 2.6281 0.4165 2.5258 36 1 4.2433 1.4532 3.9816 37 1 4.1707 2.7350 2.7490 38 1 3.6034 4.3933 4.4973 39 1 5.1404 3.5792 4.8771 40 1 3.6505 3.7398 6.8756 41 1 3.9705 2.0486 6.4197 42 1 1.8962 1.2715 7.5348 43 1 1.5671 2.9401 8.0598 44 1 0.3329 2.0325 7.1537 45 1 0.0850 0.6572 3.9674 46 1 -0.1988 1.2239 5.6307 47 1 -0.2156 2.3834 4.2804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246592412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:07 Heat of formation + Delta-G solvation = -42.939528 kcal Electronic energy + Delta-G solvation = -23768.458159 eV Core-core repulsion = 20564.762047 eV Total energy + Delta-G solvation = -3203.696113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.86706 -38.40803 -35.22588 -34.10732 -33.04349 -32.71709 -30.04515 -28.90463 -27.68385 -26.23264 -25.80774 -23.06972 -22.80111 -21.45146 -21.21463 -19.58384 -18.17188 -16.60381 -16.32566 -15.73790 -15.44147 -14.93357 -14.67340 -14.55486 -14.28566 -14.06700 -13.62018 -13.29423 -13.05269 -12.75054 -12.65227 -12.46615 -12.15939 -12.05723 -11.95508 -11.71383 -11.70108 -11.53175 -11.24225 -11.09826 -10.88507 -10.82657 -10.71576 -10.55313 -10.48514 -10.20920 -10.07137 -10.05698 -9.59723 -8.78817 -8.39659 -7.99907 -7.56524 -6.00439 -4.05071 3.33389 3.37896 3.40219 3.56263 3.69973 4.27078 4.48404 4.66996 4.71361 4.89074 5.09564 5.20412 5.29909 5.31300 5.33562 5.36291 5.38296 5.45094 5.52633 5.54788 5.56588 5.68052 5.75926 5.76451 5.79706 5.86003 5.87101 5.98382 6.03140 6.06690 6.08615 6.22949 6.25995 6.26913 6.39736 6.51559 6.51857 7.06662 7.26189 7.34957 7.52107 7.63840 7.96917 8.28799 8.53452 8.95517 9.24009 9.60133 11.07481 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.004541 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.668971 B = 6165.131800 C = 7083.921861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.031 3.969 16 N -0.514 5.514 17 C 0.056 3.944 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.084 4.084 21 H 0.080 0.920 22 C -0.147 4.147 23 C 0.088 3.912 24 H 0.036 0.964 25 C -0.154 4.154 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 -6.474 18.463 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.100 4.100 16 N -0.239 5.239 17 C -0.071 4.071 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.103 4.103 21 H 0.098 0.902 22 C -0.205 4.205 23 C -0.021 4.021 24 H 0.054 0.946 25 C -0.211 4.211 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.215 -5.287 18.163 19.623 hybrid contribution 1.340 -1.101 -0.327 1.764 sum -3.876 -6.388 17.836 19.338 Atomic orbital electron populations 1.22225 0.96897 1.01265 1.02342 1.21382 0.93451 0.84479 1.02419 1.48262 1.64405 1.13100 1.07721 1.19216 0.96033 0.93652 0.78168 1.21406 0.97017 1.31790 1.06180 0.92675 1.24923 0.97735 0.94980 0.96423 1.69926 1.35662 1.33509 1.14315 0.86586 0.84964 0.78189 0.77821 1.20321 1.21187 1.20225 1.20165 0.78814 0.87127 0.84667 1.90649 1.44635 1.17711 1.86836 1.22172 1.02557 0.94230 0.91021 1.61540 1.12852 1.47219 1.02249 1.22164 0.86955 0.97072 1.00956 1.21542 1.00089 0.99708 0.93864 1.21654 0.95239 1.00794 0.97583 1.21163 0.96081 0.99273 0.93745 0.90192 1.21890 1.00936 1.00866 0.96788 1.21615 0.95153 0.95670 0.89636 0.94643 1.22040 0.95132 1.02306 1.01606 0.92003 0.92297 0.93117 0.90068 0.92089 0.95196 0.93936 0.92718 0.88159 0.92872 0.95897 0.88918 0.90800 0.91797 0.92063 0.92592 0.92981 0.92669 0.92264 0.92651 0.91836 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.74 5.94 -4.04 -0.02 1.72 16 3 N -0.60 -12.87 2.46 -175.05 -0.43 -13.30 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 5 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.77 7.36 -10.98 -0.08 10.68 16 14 O -0.52 -13.40 14.42 5.56 0.08 -13.32 16 15 C 0.03 0.49 3.82 -4.97 -0.02 0.48 16 16 N -0.51 -7.95 4.12 -228.12 -0.94 -8.89 16 17 C 0.06 0.88 5.11 -3.83 -0.02 0.86 16 18 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 19 C -0.12 -1.24 5.29 -26.61 -0.14 -1.38 16 20 C -0.08 -0.90 2.40 -90.55 -0.22 -1.12 16 21 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 22 C -0.15 -1.23 8.88 37.16 0.33 -0.90 16 23 C 0.09 1.05 1.96 -67.72 -0.13 0.92 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 C -0.15 -1.61 8.43 37.16 0.31 -1.29 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.65 7.25 -51.93 -0.38 0.28 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.10 1.38 4.61 -51.93 -0.24 1.14 16 35 H 0.05 0.79 7.31 -51.93 -0.38 0.41 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 1.79 6.35 -51.93 -0.33 1.46 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.46 6.31 -51.93 -0.33 0.13 16 45 H 0.05 0.55 6.40 -51.93 -0.33 0.22 16 46 H 0.06 0.54 6.12 -51.93 -0.32 0.22 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -32.54 358.82 -8.87 -41.40 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -8.48 Total: -1.44 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.22 Total: -0.76 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.63 Total: -48.33 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.54 -8.87 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246592412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.536 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds