Wall clock time and date at job start Tue Mar 31 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46781 * 2 1 4 4 C 1.36936 * 120.00020 * 83.64627 * 3 2 1 5 5 H 1.08005 * 120.00048 * 217.09657 * 4 3 2 6 6 C 1.38815 * 120.00255 * 37.09635 * 4 3 2 7 7 N 1.31615 * 119.99680 * 217.55944 * 6 4 3 8 8 Si 1.86799 * 119.99805 * 37.55804 * 6 4 3 9 9 H 1.48495 * 109.46921 * 90.29919 * 8 6 4 10 10 H 1.48499 * 109.47177 * 210.29948 * 8 6 4 11 11 H 1.48496 * 109.47184 * 330.30155 * 8 6 4 12 12 C 1.46505 * 120.00206 * 263.64324 * 3 2 1 13 13 H 1.08990 * 109.47319 * 175.41339 * 12 3 2 14 14 C 1.52998 * 109.46863 * 55.40857 * 12 3 2 15 15 C 1.50698 * 109.46702 * 295.41232 * 12 3 2 16 16 O 1.21278 * 120.00383 * 15.89714 * 15 12 3 17 17 N 1.34784 * 119.99940 * 195.89538 * 15 12 3 18 18 C 1.46496 * 120.00073 * 179.72366 * 17 15 12 19 19 H 1.09004 * 109.47123 * 35.00397 * 18 17 15 20 20 C 1.52995 * 109.47392 * 275.00240 * 18 17 15 21 21 C 1.52999 * 109.47546 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47204 * 59.99658 * 21 20 18 23 23 C 1.53004 * 109.47156 * 300.00368 * 22 21 20 24 24 C 1.52999 * 109.46964 * 155.00139 * 18 17 15 25 25 H 1.09004 * 109.46990 * 60.00176 * 24 18 17 26 26 C 1.52995 * 109.47148 * 300.00250 * 24 18 17 27 27 H 1.09005 * 109.47558 * 305.60537 * 1 2 3 28 28 H 1.09001 * 109.47279 * 65.60873 * 1 2 3 29 29 H 1.09005 * 109.47027 * 185.60643 * 1 2 3 30 30 H 1.09002 * 109.47387 * 240.00156 * 2 1 3 31 31 H 1.08999 * 109.47121 * 119.99569 * 2 1 3 32 32 H 0.97005 * 119.99711 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47453 * 299.99886 * 14 12 3 34 34 H 1.09000 * 109.47025 * 60.00565 * 14 12 3 35 35 H 1.08998 * 109.46806 * 180.02562 * 14 12 3 36 36 H 0.97001 * 119.99504 * 0.02562 * 17 15 12 37 37 H 1.09004 * 109.47115 * 300.00162 * 20 18 17 38 38 H 1.08998 * 109.47098 * 60.00062 * 20 18 17 39 39 H 1.09004 * 109.46729 * 300.00010 * 21 20 18 40 40 H 1.08995 * 109.47535 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.46783 * 180.02562 * 22 21 20 42 42 H 1.08991 * 109.46868 * 60.00237 * 22 21 20 43 43 H 1.08997 * 109.46956 * 300.00126 * 23 22 21 44 44 H 1.08998 * 109.47106 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47802 * 60.00146 * 26 24 18 46 46 H 1.09008 * 109.46980 * 179.97438 * 26 24 18 47 47 H 1.08998 * 109.47283 * 299.99436 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1227 2.0705 1.1786 5 1 1.8895 3.1246 1.2102 6 6 2.5283 1.4145 2.3328 7 7 1.9855 1.7244 3.4911 8 14 3.8443 0.0919 2.2418 9 1 5.1813 0.7105 2.4288 10 1 3.6103 -0.9134 3.3094 11 1 3.7875 -0.5725 0.9151 12 6 2.3948 2.0251 -1.2609 13 1 2.6534 3.0672 -1.0737 14 6 1.2195 1.9588 -2.2383 15 6 3.5823 1.3117 -1.8541 16 8 3.8890 0.2086 -1.4541 17 7 4.3035 1.8995 -2.8293 18 6 5.4615 1.2085 -3.4017 19 1 5.2645 0.1370 -3.4368 20 6 6.6934 1.4723 -2.5336 21 6 7.9030 0.7512 -3.1317 22 6 8.1568 1.2702 -4.5485 23 6 6.9249 1.0062 -5.4167 24 6 5.7156 1.7269 -4.8186 25 1 5.9127 2.7984 -4.7835 26 6 4.4838 1.4630 -5.6868 27 1 -0.3634 0.5983 0.8356 28 1 -0.3634 0.4244 -0.9359 29 1 -0.3633 -1.0228 0.1004 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2687 1.2657 4.2976 33 1 0.9610 0.9166 -2.4256 34 1 0.3606 2.4748 -1.8092 35 1 1.4999 2.4374 -3.1766 36 1 4.0584 2.7818 -3.1490 37 1 6.8904 2.5439 -2.4985 38 1 6.5124 1.1030 -1.5242 39 1 7.7062 -0.3203 -3.1671 40 1 8.7804 0.9388 -2.5130 41 1 9.0183 0.7561 -4.9747 42 1 8.3536 2.3416 -4.5131 43 1 6.7282 -0.0653 -5.4520 44 1 7.1056 1.3763 -6.4259 45 1 3.6221 1.9771 -5.2609 46 1 4.6647 1.8328 -6.6961 47 1 4.2868 0.3916 -5.7219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330675172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:58 Heat of formation + Delta-G solvation = -39.578154 kcal Electronic energy + Delta-G solvation = -24162.600876 eV Core-core repulsion = 20959.050523 eV Total energy + Delta-G solvation = -3203.550353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.87600 -38.22599 -35.78612 -33.83350 -32.50431 -32.11389 -30.92239 -29.28166 -28.57735 -26.31708 -24.20636 -23.29760 -22.23143 -21.41707 -20.86007 -20.13434 -19.03004 -16.81457 -16.35800 -15.85506 -15.17248 -14.82048 -14.57302 -14.29362 -14.13485 -13.99115 -13.59188 -13.24254 -12.96942 -12.79657 -12.45958 -12.35242 -12.16331 -11.98292 -11.90142 -11.75607 -11.57943 -11.37060 -11.23267 -11.09737 -10.96603 -10.66650 -10.57144 -10.49967 -10.26733 -10.17244 -10.12702 -9.71455 -9.41494 -8.74662 -8.54497 -8.31222 -6.75033 -6.07010 -3.30178 3.41302 3.51829 3.61586 3.68234 3.88659 4.54167 4.61817 4.69877 4.78103 4.99573 4.99708 5.12325 5.30952 5.33870 5.38086 5.40299 5.42943 5.53853 5.63289 5.65156 5.77767 5.86726 5.89395 5.91423 5.93301 6.05428 6.09056 6.10747 6.14658 6.20473 6.25829 6.36038 6.43286 6.48131 6.55533 6.59551 6.75640 6.82072 6.99321 7.15332 7.39914 8.02011 8.07065 8.40039 8.94380 9.08272 9.77455 10.21900 11.07369 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.005542 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.798878 B = 5050.979726 C = 5890.877618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 N -0.570 5.570 4 C -0.288 4.288 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.872 5.872 8 Si 0.827 3.173 9 H -0.295 1.295 10 H -0.300 1.300 11 H -0.230 1.230 12 C 0.151 3.849 13 H 0.088 0.912 14 C -0.150 4.150 15 C 0.489 3.511 16 O -0.529 6.529 17 N -0.738 5.738 18 C 0.152 3.848 19 H 0.081 0.919 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.097 4.097 25 H 0.072 0.928 26 C -0.145 4.145 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 0.972 -19.026 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 N -0.290 5.290 4 C -0.416 4.416 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.509 5.509 8 Si 0.653 3.347 9 H -0.222 1.222 10 H -0.227 1.227 11 H -0.153 1.153 12 C 0.039 3.961 13 H 0.106 0.894 14 C -0.210 4.210 15 C 0.275 3.725 16 O -0.403 6.403 17 N -0.392 5.392 18 C 0.046 3.954 19 H 0.100 0.900 20 C -0.170 4.170 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.148 4.148 24 C -0.116 4.116 25 H 0.091 0.909 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.226 0.774 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.128 0.118 -18.487 19.814 hybrid contribution 0.950 -0.263 0.120 0.993 sum 8.078 -0.145 -18.367 20.066 Atomic orbital electron populations 1.22361 0.99521 0.99282 1.01415 1.20987 0.91229 0.85550 0.99654 1.44035 1.71563 1.12064 1.01368 1.18576 1.43093 0.95897 0.84011 0.90804 1.25422 0.97099 0.97103 0.94797 1.70116 1.38165 1.43025 0.99611 0.87639 0.84540 0.82885 0.79629 1.22217 1.22690 1.15251 1.20698 0.89812 0.97207 0.88408 0.89437 1.22181 0.99161 1.01934 0.97684 1.22969 0.84871 0.86971 0.77692 1.90636 1.70035 1.20535 1.59091 1.46499 1.30622 1.21571 1.40498 1.20846 0.85554 0.97995 0.90984 0.90044 1.21937 0.94389 1.00496 1.00164 1.21494 0.97908 1.00297 0.95805 1.21558 0.97481 1.01134 0.95541 1.21543 0.94114 1.00679 0.98510 1.21377 0.95478 1.00374 0.94372 0.90948 1.21805 0.97565 1.01974 0.98915 0.91962 0.94019 0.94759 0.93218 0.93800 0.92737 0.92666 0.91510 0.93482 0.77433 0.92063 0.91268 0.91943 0.92032 0.92156 0.92034 0.91825 0.91850 0.92230 0.92899 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 9.96 37.16 0.37 -3.05 16 2 C 0.15 3.53 3.78 -4.04 -0.02 3.51 16 3 N -0.57 -13.62 1.82 -166.98 -0.30 -13.92 16 4 C -0.29 -8.00 9.61 -15.06 -0.14 -8.15 16 5 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 6 C 0.06 1.75 5.01 -17.43 -0.09 1.66 16 7 N -0.87 -26.55 13.97 55.49 0.78 -25.77 16 8 Si 0.83 22.62 26.49 -169.99 -4.50 18.11 16 9 H -0.29 -8.26 7.11 56.52 0.40 -7.86 16 10 H -0.30 -8.24 7.11 56.52 0.40 -7.84 16 11 H -0.23 -6.34 5.07 56.52 0.29 -6.05 16 12 C 0.15 2.91 3.10 -69.08 -0.21 2.69 16 13 H 0.09 1.63 7.89 -51.93 -0.41 1.22 16 14 C -0.15 -2.36 8.13 37.16 0.30 -2.06 16 15 C 0.49 9.30 6.95 -10.98 -0.08 9.22 16 16 O -0.53 -12.23 13.17 5.56 0.07 -12.16 16 17 N -0.74 -10.56 4.38 -53.81 -0.24 -10.79 16 18 C 0.15 2.00 1.90 -67.94 -0.13 1.87 16 19 H 0.08 1.28 7.57 -51.93 -0.39 0.88 16 20 C -0.13 -1.79 5.49 -26.73 -0.15 -1.93 16 21 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 22 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 23 C -0.11 -0.98 5.20 -26.75 -0.14 -1.12 16 24 C -0.10 -0.95 2.30 -90.65 -0.21 -1.16 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 C -0.15 -1.34 9.03 37.16 0.34 -1.01 16 27 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.04 0.76 6.30 -51.93 -0.33 0.43 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 1.14 6.20 -51.93 -0.32 0.82 16 31 H 0.04 1.13 4.37 -51.93 -0.23 0.91 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 33 H 0.05 0.91 6.57 -51.93 -0.34 0.56 16 34 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.39 4.52 8.40 -40.82 -0.34 4.17 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 46 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -32.41 354.65 -8.08 -40.49 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.76 Total: 0.91 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.47 Total: -2.22 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.24 Total: -50.49 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.50 Total: 18.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.41 -8.08 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330675172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.916 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds