Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46985 * 2 1 4 4 C 1.36933 * 120.00351 * 82.66743 * 3 2 1 5 5 H 1.08001 * 120.00194 * 170.34176 * 4 3 2 6 6 C 1.38817 * 119.99801 * 350.34360 * 4 3 2 7 7 N 1.31617 * 119.99796 * 7.04609 * 6 4 3 8 8 Si 1.86800 * 119.99709 * 187.04683 * 6 4 3 9 9 H 1.48500 * 109.47319 * 90.00096 * 8 6 4 10 10 H 1.48508 * 109.46808 * 209.99731 * 8 6 4 11 11 H 1.48492 * 109.47383 * 329.99728 * 8 6 4 12 12 C 1.46502 * 119.99639 * 262.66832 * 3 2 1 13 13 H 1.09004 * 109.47188 * 174.29021 * 12 3 2 14 14 C 1.52998 * 109.47501 * 54.29061 * 12 3 2 15 15 C 1.50704 * 109.47018 * 294.28560 * 12 3 2 16 16 O 1.21282 * 119.99928 * 19.32180 * 15 12 3 17 17 N 1.34776 * 119.99842 * 199.32213 * 15 12 3 18 18 C 1.46503 * 119.99949 * 180.02562 * 17 15 12 19 19 H 1.08997 * 109.47067 * 325.00366 * 18 17 15 20 20 C 1.53005 * 109.47220 * 84.99842 * 18 17 15 21 21 C 1.52997 * 109.47139 * 60.00086 * 20 18 17 22 22 C 1.53005 * 109.47011 * 60.00028 * 21 20 18 23 23 C 1.52996 * 109.47004 * 299.99932 * 22 21 20 24 24 C 1.52993 * 109.47531 * 204.99995 * 18 17 15 25 25 H 1.09002 * 109.47521 * 180.02562 * 24 18 17 26 26 C 1.53005 * 109.46993 * 59.99708 * 24 18 17 27 27 H 1.09000 * 109.47208 * 66.34351 * 1 2 3 28 28 H 1.09004 * 109.47028 * 186.34141 * 1 2 3 29 29 H 1.09000 * 109.47645 * 306.33979 * 1 2 3 30 30 H 1.08999 * 109.47171 * 239.99582 * 2 1 3 31 31 H 1.08998 * 109.46874 * 119.99592 * 2 1 3 32 32 H 0.96998 * 119.99480 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46742 * 299.99618 * 14 12 3 34 34 H 1.08992 * 109.47007 * 59.99772 * 14 12 3 35 35 H 1.09000 * 109.46878 * 180.02562 * 14 12 3 36 36 H 0.97000 * 120.00303 * 359.97438 * 17 15 12 37 37 H 1.09001 * 109.46738 * 300.00041 * 20 18 17 38 38 H 1.08996 * 109.47282 * 180.02562 * 20 18 17 39 39 H 1.09002 * 109.46769 * 300.00203 * 21 20 18 40 40 H 1.09000 * 109.47160 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.46997 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.46734 * 59.99940 * 22 21 20 43 43 H 1.09003 * 109.47163 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.47556 * 300.00303 * 23 22 21 45 45 H 1.08995 * 109.46778 * 300.00081 * 26 24 18 46 46 H 1.08999 * 109.47149 * 60.00408 * 26 24 18 47 47 H 1.09001 * 109.46738 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1038 2.0772 1.1761 5 1 2.6059 3.0331 1.2027 6 6 1.5452 1.5542 2.3343 7 7 1.0567 0.3321 2.3355 8 14 1.4868 2.5851 3.8910 9 1 0.2195 3.3582 3.9256 10 1 1.5557 1.6944 5.0774 11 1 2.6388 3.5219 3.9079 12 6 2.4151 2.0178 -1.2584 13 1 2.6515 3.0662 -1.0765 14 6 1.2656 1.9213 -2.2635 15 6 3.6287 1.3183 -1.8144 16 8 3.9084 0.1993 -1.4397 17 7 4.4031 1.9364 -2.7280 18 6 5.5825 1.2562 -3.2689 19 1 6.0372 0.6431 -2.4908 20 6 5.1650 0.3655 -4.4409 21 6 4.5268 1.2260 -5.5332 22 6 5.5379 2.2667 -6.0185 23 6 5.9554 3.1573 -4.8466 24 6 6.5937 2.2968 -3.7542 25 1 7.4710 1.7907 -4.1571 26 6 7.0112 3.1874 -2.5823 27 1 -0.3633 0.4123 -0.9413 28 1 -0.3633 -1.0214 0.1135 29 1 -0.3634 0.6089 0.8278 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.6667 -0.0335 3.1449 33 1 1.0292 0.8728 -2.4455 34 1 0.3879 2.4272 -1.8614 35 1 1.5611 2.3945 -3.1999 36 1 4.1792 2.8312 -3.0280 37 1 4.4447 -0.3759 -4.0951 38 1 6.0424 -0.1408 -4.8430 39 1 3.6493 1.7320 -5.1307 40 1 4.2289 0.5914 -6.3679 41 1 5.0834 2.8794 -6.7970 42 1 6.4154 1.7606 -6.4209 43 1 6.6761 3.8984 -5.1922 44 1 5.0779 3.6633 -4.4441 45 1 6.1337 3.6935 -2.1800 46 1 7.4659 2.5744 -1.8041 47 1 7.7312 3.9291 -2.9282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330675173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -24.867328 kcal Electronic energy + Delta-G solvation = -24278.045627 eV Core-core repulsion = 21075.133183 eV Total energy + Delta-G solvation = -3202.912443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03661 -38.06840 -35.68267 -33.31961 -32.53407 -32.09763 -30.07718 -29.28679 -28.38431 -26.27241 -24.21134 -23.14749 -22.28898 -21.42463 -20.89270 -19.40276 -18.80888 -16.84069 -16.39557 -15.56916 -15.19229 -14.89385 -14.82472 -14.09080 -13.87719 -13.71110 -13.36267 -13.28132 -12.83610 -12.77717 -12.23396 -12.03842 -11.93989 -11.84787 -11.73627 -11.59360 -11.50490 -11.13647 -10.95150 -10.91217 -10.66867 -10.62272 -10.57364 -10.33243 -10.29262 -9.99296 -9.82108 -9.57944 -9.38639 -8.77489 -8.49337 -8.24047 -6.74030 -5.49298 -3.03505 3.41731 3.46958 3.49591 3.51624 3.75166 4.53480 4.59076 4.65623 4.71572 5.03969 5.15292 5.33816 5.35831 5.41932 5.43413 5.54574 5.56728 5.57805 5.67583 5.75414 5.82478 5.87285 5.95426 5.98529 6.03657 6.05602 6.14093 6.24745 6.26494 6.28832 6.36622 6.38683 6.57229 6.81752 6.93762 7.04356 7.19534 7.32701 7.46682 7.71967 8.07368 8.18347 8.27292 8.65248 9.06337 9.37838 9.96694 10.38966 11.38281 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.004815 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.965671 B = 5813.981194 C = 6381.665326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 N -0.574 5.574 4 C -0.245 4.245 5 H 0.071 0.929 6 C -0.005 4.005 7 N -0.901 5.901 8 Si 0.909 3.091 9 H -0.289 1.289 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.160 3.840 13 H 0.078 0.922 14 C -0.150 4.150 15 C 0.491 3.509 16 O -0.528 6.528 17 N -0.733 5.733 18 C 0.151 3.849 19 H 0.082 0.918 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.097 4.097 25 H 0.077 0.923 26 C -0.147 4.147 27 H 0.002 0.998 28 H 0.017 0.983 29 H 0.075 0.925 30 H 0.012 0.988 31 H 0.103 0.897 32 H 0.248 0.752 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.391 0.609 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.161 5.440 -15.913 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 N -0.293 5.293 4 C -0.374 4.374 5 H 0.089 0.911 6 C -0.201 4.201 7 N -0.548 5.548 8 Si 0.740 3.260 9 H -0.217 1.217 10 H -0.218 1.218 11 H -0.209 1.209 12 C 0.046 3.954 13 H 0.096 0.904 14 C -0.209 4.209 15 C 0.276 3.724 16 O -0.401 6.401 17 N -0.389 5.389 18 C 0.045 3.955 19 H 0.100 0.900 20 C -0.168 4.168 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.116 4.116 25 H 0.096 0.904 26 C -0.204 4.204 27 H 0.021 0.979 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.121 0.879 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.274 4.499 -15.405 18.055 hybrid contribution -0.127 0.915 0.634 1.121 sum 8.147 5.414 -14.770 17.716 Atomic orbital electron populations 1.22419 0.99925 0.98540 0.98595 1.21049 0.91277 0.83591 0.99606 1.44002 1.73220 1.11849 1.00262 1.19347 1.30099 1.01398 0.86559 0.91071 1.24809 1.00373 0.96849 0.98066 1.70256 1.44624 1.13640 1.26307 0.86169 0.77625 0.79197 0.83021 1.21661 1.21823 1.20865 1.20196 0.90396 0.96142 0.88666 0.90423 1.22217 0.99321 1.02144 0.97256 1.22898 0.85202 0.87160 0.77111 1.90613 1.71663 1.19524 1.58336 1.46455 1.28035 1.19775 1.44626 1.20796 0.86298 0.93225 0.95175 0.89973 1.21899 1.00927 0.98251 0.95708 1.21484 0.98549 0.97469 0.97968 1.21537 0.99151 0.97499 0.97394 1.21594 1.00436 0.97713 0.95476 1.21396 0.97960 0.96403 0.95848 0.90432 1.21809 1.01405 0.99434 0.97761 0.97872 0.96345 0.90593 0.96960 0.87934 0.94085 0.92490 0.91703 0.93885 0.77476 0.91359 0.91845 0.91693 0.92464 0.92255 0.92209 0.91979 0.91940 0.92225 0.92539 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.11 37.16 0.34 -3.02 16 2 C 0.17 4.44 4.29 -4.04 -0.02 4.42 16 3 N -0.57 -14.56 2.31 -166.98 -0.39 -14.95 16 4 C -0.24 -6.69 9.74 -15.06 -0.15 -6.84 16 5 H 0.07 1.87 7.71 -52.49 -0.40 1.47 16 6 C 0.00 -0.14 5.09 -17.43 -0.09 -0.23 16 7 N -0.90 -25.82 7.48 55.49 0.42 -25.41 16 8 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.16 3.25 3.09 -69.08 -0.21 3.03 16 13 H 0.08 1.47 7.81 -51.93 -0.41 1.06 16 14 C -0.15 -2.63 8.12 37.16 0.30 -2.33 16 15 C 0.49 9.60 6.96 -10.98 -0.08 9.53 16 16 O -0.53 -12.61 14.14 5.56 0.08 -12.53 16 17 N -0.73 -10.59 3.54 -53.80 -0.19 -10.78 16 18 C 0.15 1.97 2.23 -67.93 -0.15 1.82 16 19 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 20 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16 21 C -0.12 -1.21 5.77 -26.73 -0.15 -1.36 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.11 -0.99 5.03 -26.73 -0.13 -1.12 16 24 C -0.10 -0.98 2.51 -90.62 -0.23 -1.20 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 C -0.15 -1.53 9.04 37.16 0.34 -1.20 16 27 H 0.00 0.05 6.43 -51.93 -0.33 -0.28 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 2.07 6.15 -51.93 -0.32 1.76 16 30 H 0.01 0.32 6.14 -51.93 -0.32 0.00 16 31 H 0.10 3.08 5.79 -51.93 -0.30 2.78 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.06 1.08 6.60 -51.93 -0.34 0.74 16 34 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.39 4.73 6.65 -40.82 -0.27 4.46 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 45 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -30.72 349.23 -8.80 -39.52 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.42 Total: 3.36 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.54 Total: -1.39 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.16 Total: -51.13 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.72 -8.80 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330675173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.652 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds