Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47258 * 2 1 4 4 C 1.36941 * 119.99954 * 94.88611 * 3 2 1 5 5 H 1.08001 * 119.99979 * 162.20112 * 4 3 2 6 6 C 1.38814 * 119.99868 * 342.21279 * 4 3 2 7 7 N 1.31618 * 119.99809 * 349.38245 * 6 4 3 8 8 Si 1.86797 * 119.99772 * 169.38409 * 6 4 3 9 9 H 1.48498 * 109.47458 * 89.99777 * 8 6 4 10 10 H 1.48499 * 109.47158 * 209.99849 * 8 6 4 11 11 H 1.48501 * 109.47038 * 329.99653 * 8 6 4 12 12 C 1.46500 * 119.99913 * 274.89014 * 3 2 1 13 13 H 1.09004 * 109.46471 * 174.95898 * 12 3 2 14 14 C 1.53002 * 109.46985 * 54.96287 * 12 3 2 15 15 C 1.50691 * 109.47230 * 294.95928 * 12 3 2 16 16 O 1.21281 * 119.99891 * 21.41736 * 15 12 3 17 17 N 1.34776 * 120.00088 * 201.41300 * 15 12 3 18 18 C 1.46498 * 120.00050 * 180.02562 * 17 15 12 19 19 H 1.08999 * 109.47533 * 325.00070 * 18 17 15 20 20 C 1.53003 * 109.47290 * 85.00093 * 18 17 15 21 21 C 1.53002 * 109.47076 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47232 * 299.99995 * 21 20 18 23 23 C 1.53003 * 109.47087 * 60.00011 * 22 21 20 24 24 C 1.52994 * 109.47158 * 299.99867 * 23 22 21 25 25 H 1.08999 * 109.47641 * 300.00008 * 24 23 22 26 26 C 1.53003 * 109.47158 * 179.97438 * 24 23 22 27 27 H 1.08996 * 109.47009 * 67.20697 * 1 2 3 28 28 H 1.08996 * 109.47287 * 187.20382 * 1 2 3 29 29 H 1.09004 * 109.47006 * 307.20419 * 1 2 3 30 30 H 1.09001 * 109.47084 * 240.00095 * 2 1 3 31 31 H 1.08997 * 109.47011 * 120.00348 * 2 1 3 32 32 H 0.97004 * 119.99226 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47040 * 299.99350 * 14 12 3 34 34 H 1.09006 * 109.47088 * 59.99921 * 14 12 3 35 35 H 1.09004 * 109.47038 * 179.97438 * 14 12 3 36 36 H 0.97000 * 120.00202 * 0.02562 * 17 15 12 37 37 H 1.09000 * 109.46872 * 60.00115 * 20 18 17 38 38 H 1.08997 * 109.47065 * 300.00159 * 20 18 17 39 39 H 1.09002 * 109.46775 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.47041 * 60.00384 * 21 20 18 41 41 H 1.09000 * 109.46700 * 299.99980 * 22 21 20 42 42 H 1.08993 * 109.46890 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46872 * 59.99803 * 23 22 21 44 44 H 1.08997 * 109.47065 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47065 * 59.99892 * 26 24 23 46 46 H 1.09001 * 109.47067 * 180.02562 * 26 24 23 47 47 H 1.09000 * 109.46872 * 299.99936 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3419 1.9930 1.1816 5 1 2.9594 2.8791 1.1796 6 6 1.8763 1.4742 2.3821 7 7 0.9612 0.5282 2.3793 8 14 2.5487 2.1187 4.0013 9 1 1.7208 3.2627 4.4608 10 1 2.5084 1.0382 5.0192 11 1 3.9514 2.5676 3.8112 12 6 2.1606 2.1078 -1.2641 13 1 2.4477 3.1393 -1.0598 14 6 0.8283 2.0886 -2.0160 15 6 3.2222 1.4482 -2.1060 16 8 3.5258 0.2918 -1.9025 17 7 3.8341 2.1433 -3.0853 18 6 4.8657 1.5018 -3.9041 19 1 5.4352 0.8041 -3.2902 20 6 4.2038 0.7440 -5.0568 21 6 5.2813 0.0746 -5.9123 22 6 6.2207 1.1423 -6.4767 23 6 6.8826 1.9001 -5.3240 24 6 5.8052 2.5695 -4.4685 25 1 5.2353 3.2671 -5.0822 26 6 6.4670 3.3268 -3.3155 27 1 -0.3633 0.3981 -0.9474 28 1 -0.3634 -1.0195 0.1289 29 1 -0.3633 0.6214 0.8186 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.6362 0.1655 3.2182 33 1 0.5412 1.0572 -2.2203 34 1 0.0604 2.5658 -1.4070 35 1 0.9339 2.6297 -2.9564 36 1 3.5915 3.0682 -3.2479 37 1 3.6344 1.4417 -5.6708 38 1 3.5342 -0.0163 -4.6547 39 1 4.8097 -0.4656 -6.7332 40 1 5.8511 -0.6231 -5.2986 41 1 5.6508 1.8398 -7.0904 42 1 6.9885 0.6653 -7.0857 43 1 7.4524 1.2024 -4.7102 44 1 7.5521 2.6604 -5.7260 45 1 7.1365 4.0873 -3.7172 46 1 5.6993 3.8033 -2.7057 47 1 7.0365 2.6288 -2.7018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330675174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = -30.359518 kcal Electronic energy + Delta-G solvation = -23971.064497 eV Core-core repulsion = 20767.913894 eV Total energy + Delta-G solvation = -3203.150603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84154 -38.16896 -35.71809 -33.80235 -32.48651 -32.05796 -30.02611 -29.09897 -28.47316 -26.29171 -24.23070 -23.18343 -21.96217 -21.29063 -20.59984 -20.11626 -19.00946 -16.91565 -16.25390 -15.88108 -14.96459 -14.77904 -14.50296 -14.23345 -14.16903 -13.73399 -13.38141 -13.32251 -12.88924 -12.79220 -12.41813 -12.06024 -11.96944 -11.75670 -11.63625 -11.54173 -11.24553 -11.21129 -10.96225 -10.89748 -10.67197 -10.63113 -10.60944 -10.46771 -10.29100 -10.16804 -9.89138 -9.55415 -9.29971 -8.70664 -8.53683 -8.28442 -6.65505 -5.60974 -3.09215 3.40514 3.46424 3.48385 3.49993 3.67704 4.53623 4.55745 4.63986 4.79428 5.00618 5.12710 5.32544 5.38019 5.38754 5.42521 5.45967 5.53372 5.59542 5.66363 5.73781 5.82066 5.92968 5.95387 5.96349 6.06196 6.07854 6.10295 6.13351 6.24217 6.30473 6.32937 6.43955 6.58947 6.83305 6.94281 7.00894 7.19228 7.36662 7.45345 7.72690 7.99953 8.11023 8.35382 8.51263 9.02549 9.35471 9.93059 10.39674 11.36869 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.004519 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.751956 B = 6194.791616 C = 6831.299334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.172 3.828 3 N -0.571 5.571 4 C -0.250 4.250 5 H 0.068 0.932 6 C -0.001 4.001 7 N -0.898 5.898 8 Si 0.907 3.093 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.160 3.840 13 H 0.079 0.921 14 C -0.153 4.153 15 C 0.495 3.505 16 O -0.530 6.530 17 N -0.738 5.738 18 C 0.151 3.849 19 H 0.083 0.917 20 C -0.128 4.128 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.097 4.097 25 H 0.071 0.929 26 C -0.147 4.147 27 H 0.011 0.989 28 H 0.015 0.985 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.077 0.923 32 H 0.250 0.750 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.392 0.608 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.516 4.696 -16.745 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.047 3.953 3 N -0.291 5.291 4 C -0.380 4.380 5 H 0.085 0.915 6 C -0.198 4.198 7 N -0.544 5.544 8 Si 0.737 3.263 9 H -0.216 1.216 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.046 3.954 13 H 0.097 0.903 14 C -0.213 4.213 15 C 0.280 3.720 16 O -0.404 6.404 17 N -0.392 5.392 18 C 0.045 3.955 19 H 0.101 0.899 20 C -0.167 4.167 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.116 4.116 25 H 0.090 0.910 26 C -0.204 4.204 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.656 3.724 -16.355 18.438 hybrid contribution 0.193 0.738 0.782 1.093 sum 7.849 4.461 -15.573 18.001 Atomic orbital electron populations 1.22621 0.99568 0.99072 0.99672 1.20723 0.91746 0.83767 0.99041 1.43890 1.75051 1.10804 0.99315 1.19280 1.25052 1.09753 0.83865 0.91460 1.24875 0.97763 0.99406 0.97788 1.70198 1.29666 1.30052 1.24511 0.86225 0.78540 0.77740 0.83787 1.21619 1.21658 1.20804 1.20185 0.91760 0.95642 0.87807 0.90347 1.22352 0.98291 1.02138 0.98497 1.22858 0.82738 0.87371 0.78986 1.90586 1.64011 1.17583 1.68190 1.46431 1.41019 1.15795 1.35920 1.20857 0.88823 0.94290 0.91489 0.89940 1.21917 0.98144 0.99909 0.96714 1.21498 0.97086 0.97801 0.99137 1.21557 0.98651 0.97963 0.97546 1.21557 0.97289 0.99370 0.96711 1.21383 0.96421 0.96918 0.96831 0.91015 1.21818 1.00687 0.99976 0.97954 0.97038 0.96593 0.89133 0.95674 0.90444 0.93966 0.91993 0.91587 0.94098 0.77459 0.92188 0.91374 0.92074 0.91846 0.92083 0.92150 0.91744 0.91842 0.92893 0.92161 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.98 37.16 0.33 -3.35 16 2 C 0.17 4.50 4.72 -4.04 -0.02 4.48 16 3 N -0.57 -14.54 2.37 -166.98 -0.40 -14.94 16 4 C -0.25 -6.86 9.67 -15.06 -0.15 -7.01 16 5 H 0.07 1.79 7.79 -52.49 -0.41 1.38 16 6 C 0.00 -0.03 5.14 -17.43 -0.09 -0.12 16 7 N -0.90 -25.66 7.92 55.49 0.44 -25.22 16 8 Si 0.91 21.97 29.57 -169.99 -5.03 16.94 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.16 3.26 3.12 -69.09 -0.22 3.05 16 13 H 0.08 1.50 7.85 -51.93 -0.41 1.09 16 14 C -0.15 -2.76 7.91 37.16 0.29 -2.46 16 15 C 0.50 9.67 7.00 -10.99 -0.08 9.59 16 16 O -0.53 -12.50 13.86 5.56 0.08 -12.43 16 17 N -0.74 -10.72 4.38 -53.81 -0.24 -10.96 16 18 C 0.15 1.98 1.90 -67.93 -0.13 1.85 16 19 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 20 C -0.13 -1.57 5.50 -26.73 -0.15 -1.72 16 21 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 22 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 23 C -0.11 -1.00 5.20 -26.73 -0.14 -1.14 16 24 C -0.10 -0.98 2.30 -90.62 -0.21 -1.18 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 C -0.15 -1.54 9.03 37.16 0.34 -1.21 16 27 H 0.01 0.24 5.19 -51.93 -0.27 -0.03 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 2.47 6.11 -51.93 -0.32 2.15 16 30 H 0.03 0.66 5.96 -51.93 -0.31 0.35 16 31 H 0.08 2.28 6.16 -51.93 -0.32 1.97 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.06 1.20 5.90 -51.93 -0.31 0.89 16 34 H 0.07 1.24 8.11 -51.93 -0.42 0.81 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.39 4.65 8.39 -40.82 -0.34 4.31 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.67 7.44 -51.93 -0.39 0.29 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -30.80 352.37 -8.87 -39.66 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.51 Total: 3.38 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.52 Total: -1.76 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.19 Total: -51.11 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.80 -8.87 -39.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330675174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.303 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds