Wall clock time and date at job start Tue Mar 31 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47744 * 2 1 4 4 C 1.36944 * 119.99700 * 85.11805 * 3 2 1 5 5 H 1.07994 * 119.99887 * 183.91756 * 4 3 2 6 6 C 1.38813 * 119.99816 * 3.91767 * 4 3 2 7 7 N 1.31621 * 119.99915 * 331.23637 * 6 4 3 8 8 Si 1.86800 * 119.99753 * 151.24001 * 6 4 3 9 9 H 1.48505 * 109.47237 * 94.97790 * 8 6 4 10 10 H 1.48503 * 109.47131 * 214.97781 * 8 6 4 11 11 H 1.48497 * 109.47072 * 334.98148 * 8 6 4 12 12 C 1.46490 * 120.00334 * 265.12321 * 3 2 1 13 13 H 1.08997 * 109.47775 * 174.54681 * 12 3 2 14 14 C 1.53003 * 109.47326 * 54.54941 * 12 3 2 15 15 C 1.50699 * 109.47319 * 294.55294 * 12 3 2 16 16 O 1.21282 * 120.00157 * 17.77145 * 15 12 3 17 17 N 1.34779 * 120.00077 * 197.77975 * 15 12 3 18 18 C 1.46504 * 119.99639 * 179.97438 * 17 15 12 19 19 H 1.09000 * 109.47292 * 34.99700 * 18 17 15 20 20 C 1.53000 * 109.46897 * 274.99735 * 18 17 15 21 21 C 1.53002 * 109.47136 * 300.00149 * 20 18 17 22 22 C 1.53005 * 109.46927 * 300.00066 * 21 20 18 23 23 C 1.52998 * 109.47157 * 60.00386 * 22 21 20 24 24 C 1.53002 * 109.46868 * 154.99890 * 18 17 15 25 25 H 1.09000 * 109.47354 * 179.97438 * 24 18 17 26 26 C 1.52998 * 109.47126 * 300.00010 * 24 18 17 27 27 H 1.08999 * 109.47260 * 306.33715 * 1 2 3 28 28 H 1.08999 * 109.46952 * 66.33332 * 1 2 3 29 29 H 1.08997 * 109.47884 * 186.33380 * 1 2 3 30 30 H 1.09006 * 109.47044 * 239.99839 * 2 1 3 31 31 H 1.09003 * 109.46926 * 120.00667 * 2 1 3 32 32 H 0.97000 * 119.99387 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46929 * 59.99777 * 14 12 3 34 34 H 1.08997 * 109.47532 * 180.02562 * 14 12 3 35 35 H 1.09008 * 109.46881 * 300.00340 * 14 12 3 36 36 H 0.97001 * 119.99937 * 359.97438 * 17 15 12 37 37 H 1.09000 * 109.46815 * 180.02562 * 20 18 17 38 38 H 1.08996 * 109.47542 * 60.00683 * 20 18 17 39 39 H 1.09003 * 109.46729 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.47317 * 60.00086 * 21 20 18 41 41 H 1.09007 * 109.46683 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47643 * 299.99982 * 22 21 20 43 43 H 1.09000 * 109.47173 * 59.99309 * 23 22 21 44 44 H 1.09000 * 109.47477 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.47477 * 180.02562 * 26 24 18 46 46 H 1.09000 * 109.46872 * 300.00091 * 26 24 18 47 47 H 1.09000 * 109.47173 * 59.99682 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1515 2.0603 1.1817 5 1 2.4509 3.0979 1.1774 6 6 1.9017 1.4149 2.3850 7 7 1.0409 0.4203 2.4321 8 14 2.7871 1.9582 3.9376 9 1 1.9350 2.9192 4.6829 10 1 3.0612 0.7743 4.7911 11 1 4.0691 2.6130 3.5729 12 6 2.3643 2.0358 -1.2640 13 1 2.6128 3.0803 -1.0762 14 6 1.1729 1.9592 -2.2209 15 6 3.5501 1.3406 -1.8818 16 8 3.8574 0.2256 -1.5166 17 7 4.2693 1.9579 -2.8400 18 6 5.4223 1.2822 -3.4402 19 1 5.2213 0.2131 -3.5098 20 6 6.6588 1.5129 -2.5691 21 6 6.9410 3.0135 -2.4713 22 6 7.1910 3.5777 -3.8714 23 6 5.9544 3.3470 -4.7425 24 6 5.6723 1.8464 -4.8402 25 1 6.5304 1.3440 -5.2866 26 6 4.4357 1.6157 -5.7112 27 1 -0.3634 0.6089 0.8278 28 1 -0.3633 0.4125 -0.9412 29 1 -0.3635 -1.0213 0.1134 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5140 0.8900 32 1 0.8661 -0.0303 3.2730 33 1 0.3152 2.4620 -1.7741 34 1 1.4304 2.4459 -3.1615 35 1 0.9244 0.9146 -2.4087 36 1 4.0234 2.8496 -3.1323 37 1 7.5168 1.0105 -3.0158 38 1 6.4809 1.1109 -1.5717 39 1 7.8222 3.1778 -1.8511 40 1 6.0831 3.5163 -2.0248 41 1 7.3915 4.6469 -3.8018 42 1 8.0489 3.0750 -4.3180 43 1 5.0965 3.8497 -4.2959 44 1 6.1323 3.7493 -5.7398 45 1 4.6139 2.0173 -6.7088 46 1 4.2347 0.5467 -5.7808 47 1 3.5778 2.1184 -5.2647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330675175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:05 Heat of formation + Delta-G solvation = -27.646045 kcal Electronic energy + Delta-G solvation = -24300.437049 eV Core-core repulsion = 21097.404111 eV Total energy + Delta-G solvation = -3203.032938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.03788 -38.08079 -35.66824 -33.32824 -32.51788 -32.09951 -30.17450 -29.34115 -28.38801 -26.28085 -24.22476 -23.15435 -22.24671 -21.41206 -20.99014 -19.44338 -18.80374 -16.77064 -16.40810 -15.56651 -15.22248 -14.82961 -14.73064 -14.20690 -13.85124 -13.63350 -13.57074 -13.20932 -12.95359 -12.75248 -12.20047 -12.04182 -11.95293 -11.86284 -11.75434 -11.62300 -11.53483 -11.31725 -10.95318 -10.86877 -10.74109 -10.59007 -10.55839 -10.30800 -10.26754 -9.98039 -9.85860 -9.57534 -9.39277 -8.78648 -8.48469 -8.13202 -6.85554 -5.73422 -2.95483 3.42008 3.50059 3.53313 3.56447 3.73936 4.56181 4.59141 4.66130 4.72394 5.05195 5.17473 5.32253 5.36417 5.41268 5.44988 5.45858 5.55049 5.58730 5.66646 5.74643 5.79820 5.89306 5.93190 5.98254 6.01973 6.04010 6.16656 6.22669 6.26055 6.29131 6.39097 6.43275 6.55834 6.77135 6.88509 7.02969 7.14611 7.26725 7.38686 7.74208 7.99961 8.13168 8.27104 8.43657 9.04493 9.30940 9.93938 10.38343 11.29399 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.005292 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.931753 B = 5289.953506 C = 6112.506083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.171 3.829 3 N -0.572 5.572 4 C -0.260 4.260 5 H 0.074 0.926 6 C 0.009 3.991 7 N -0.882 5.882 8 Si 0.883 3.117 9 H -0.291 1.291 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.162 3.838 13 H 0.079 0.921 14 C -0.153 4.153 15 C 0.493 3.507 16 O -0.529 6.529 17 N -0.733 5.733 18 C 0.152 3.848 19 H 0.081 0.919 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.097 4.097 25 H 0.078 0.922 26 C -0.146 4.146 27 H 0.085 0.915 28 H 0.008 0.992 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.080 0.920 32 H 0.251 0.749 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.391 0.609 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 5.573 -15.914 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.047 3.953 3 N -0.292 5.292 4 C -0.388 4.388 5 H 0.092 0.908 6 C -0.189 4.189 7 N -0.526 5.526 8 Si 0.712 3.288 9 H -0.219 1.219 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.048 3.952 13 H 0.097 0.903 14 C -0.212 4.212 15 C 0.278 3.722 16 O -0.403 6.403 17 N -0.389 5.389 18 C 0.046 3.954 19 H 0.099 0.901 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.116 4.116 25 H 0.096 0.904 26 C -0.203 4.203 27 H 0.103 0.897 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.297 4.610 -15.437 18.122 hybrid contribution 0.434 0.667 0.763 1.102 sum 8.730 5.277 -14.674 17.872 Atomic orbital electron populations 1.22363 0.99556 0.98865 0.99475 1.20860 0.91525 0.83805 0.99106 1.43928 1.73658 1.11671 0.99921 1.19200 1.41119 0.95056 0.83392 0.90788 1.24694 0.98810 0.98105 0.97277 1.70333 1.31148 1.26144 1.24986 0.86569 0.80794 0.77454 0.83972 1.21870 1.21584 1.20806 1.20167 0.90728 0.96101 0.88196 0.90287 1.22269 0.99189 1.02135 0.97620 1.22869 0.84677 0.86923 0.77744 1.90604 1.69740 1.19843 1.60107 1.46457 1.30773 1.20258 1.41390 1.20794 0.85996 0.97672 0.90935 0.90054 1.21907 0.97414 0.96318 1.01267 1.21485 1.01565 0.96118 0.96370 1.21543 0.97742 1.00413 0.95880 1.21591 0.98250 0.95658 0.99696 1.21399 0.98750 0.96355 0.95125 0.90414 1.21805 0.97751 1.01904 0.98864 0.89651 0.97292 0.96309 0.96083 0.90158 0.93861 0.91671 0.93832 0.92437 0.77447 0.91903 0.91144 0.92400 0.91607 0.92243 0.92232 0.91947 0.92006 0.92921 0.92645 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.22 37.15 0.34 -3.14 16 2 C 0.17 4.44 4.34 -4.05 -0.02 4.43 16 3 N -0.57 -14.40 2.30 -166.99 -0.38 -14.78 16 4 C -0.26 -7.10 9.67 -15.06 -0.15 -7.24 16 5 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 6 C 0.01 0.25 5.01 -17.43 -0.09 0.16 16 7 N -0.88 -25.19 8.24 55.49 0.46 -24.74 16 8 Si 0.88 21.94 29.64 -169.99 -5.04 16.90 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 C 0.16 3.26 3.10 -69.09 -0.21 3.04 16 13 H 0.08 1.49 7.78 -51.93 -0.40 1.09 16 14 C -0.15 -2.64 8.07 37.16 0.30 -2.34 16 15 C 0.49 9.54 6.96 -10.98 -0.08 9.46 16 16 O -0.53 -12.51 14.10 5.56 0.08 -12.43 16 17 N -0.73 -10.49 3.54 -53.80 -0.19 -10.68 16 18 C 0.15 1.97 2.23 -67.93 -0.15 1.82 16 19 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 20 C -0.13 -1.70 5.60 -26.73 -0.15 -1.85 16 21 C -0.12 -1.35 5.77 -26.73 -0.15 -1.50 16 22 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 23 C -0.11 -0.99 5.03 -26.73 -0.13 -1.12 16 24 C -0.10 -0.94 2.51 -90.62 -0.23 -1.17 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 C -0.15 -1.37 9.04 37.16 0.34 -1.04 16 27 H 0.08 2.31 6.41 -51.93 -0.33 1.98 16 28 H 0.01 0.18 6.15 -51.93 -0.32 -0.14 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.54 6.19 -51.93 -0.32 0.22 16 31 H 0.08 2.36 5.90 -51.93 -0.31 2.06 16 32 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.07 6.50 -51.92 -0.34 0.73 16 36 H 0.39 4.68 6.65 -40.82 -0.27 4.40 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.83 7.60 -51.93 -0.39 0.44 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -30.69 350.06 -8.76 -39.45 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.42 Total: 2.72 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.54 Total: -1.72 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.12 Total: -50.20 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.04 Total: 16.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.69 -8.76 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330675175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.803 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds