Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47001 * 2 1 4 4 C 1.36940 * 119.99846 * 88.26294 * 3 2 1 5 5 H 1.08003 * 119.99888 * 351.30955 * 4 3 2 6 6 C 1.38810 * 119.99716 * 171.31046 * 4 3 2 7 7 N 1.31622 * 120.00450 * 334.58169 * 6 4 3 8 8 Si 1.86809 * 119.99643 * 154.58455 * 6 4 3 9 9 H 1.48495 * 109.46967 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.46843 * 299.99554 * 8 6 4 11 11 H 1.48496 * 109.47183 * 59.99657 * 8 6 4 12 12 C 1.46500 * 120.00238 * 268.25972 * 3 2 1 13 13 C 1.50697 * 109.47518 * 270.00529 * 12 3 2 14 14 O 1.21290 * 119.99723 * 359.97438 * 13 12 3 15 15 N 1.34773 * 120.00400 * 180.02562 * 13 12 3 16 16 C 1.46494 * 120.00063 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.47610 * 34.99354 * 16 15 13 18 18 C 1.52999 * 109.47277 * 274.99528 * 16 15 13 19 19 C 1.53007 * 109.47161 * 300.00262 * 18 16 15 20 20 C 1.53005 * 109.46802 * 299.99793 * 19 18 16 21 21 C 1.52999 * 109.47093 * 60.00165 * 20 19 18 22 22 H 1.08995 * 109.47241 * 59.99498 * 21 20 19 23 23 C 1.52996 * 109.47207 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.46868 * 299.99715 * 21 20 19 25 25 H 1.09002 * 109.47518 * 300.00331 * 24 21 20 26 26 C 1.53005 * 109.47214 * 180.02562 * 24 21 20 27 27 H 1.09000 * 109.47205 * 59.99805 * 1 2 3 28 28 H 1.09002 * 109.47427 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47115 * 300.00169 * 1 2 3 30 30 H 1.09003 * 109.46620 * 240.00419 * 2 1 3 31 31 H 1.08991 * 109.47424 * 120.00207 * 2 1 3 32 32 H 0.97000 * 119.99924 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46863 * 30.00247 * 12 3 2 34 34 H 1.08997 * 109.47009 * 149.99776 * 12 3 2 35 35 H 0.97001 * 120.00088 * 359.97438 * 15 13 12 36 36 H 1.09003 * 109.47264 * 59.99600 * 18 16 15 37 37 H 1.08995 * 109.47763 * 180.02562 * 18 16 15 38 38 H 1.09004 * 109.46728 * 59.99400 * 19 18 16 39 39 H 1.08990 * 109.47461 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.46614 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47020 * 300.00034 * 20 19 18 42 42 H 1.09004 * 109.47185 * 59.99091 * 23 21 20 43 43 H 1.08999 * 109.47846 * 179.97438 * 23 21 20 44 44 H 1.09006 * 109.47012 * 300.00124 * 23 21 20 45 45 H 1.09005 * 109.46798 * 299.99837 * 26 24 21 46 46 H 1.08998 * 109.47169 * 59.99573 * 26 24 21 47 47 H 1.08993 * 109.47303 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2126 2.0387 1.1854 5 1 1.8760 1.5948 2.1106 6 6 2.8423 3.2757 1.1978 7 7 3.6751 3.6001 0.2315 8 14 2.5076 4.4802 2.5860 9 1 3.2975 5.7186 2.3679 10 1 1.0609 4.8138 2.6138 11 1 2.8989 3.8654 3.8798 12 6 2.2988 2.0591 -1.2681 13 6 3.7339 1.8181 -1.6599 14 8 4.4519 1.1466 -0.9495 15 7 4.2198 2.3495 -2.7992 16 6 5.6150 2.1156 -3.1797 17 1 5.9120 1.1126 -2.8734 18 6 6.5114 3.1459 -2.4898 19 6 6.0945 4.5539 -2.9197 20 6 6.2385 4.6873 -4.4371 21 6 5.3422 3.6571 -5.1271 22 1 4.3041 3.8310 -4.8439 23 6 5.4866 3.7900 -6.6444 24 6 5.7590 2.2492 -4.6971 25 1 6.7971 2.0751 -4.9802 26 6 4.8631 1.2188 -5.3874 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.1154 4.4644 0.2404 33 1 1.6399 1.6672 -2.0430 34 1 2.1283 3.1295 -1.1534 35 1 3.6457 2.8868 -3.3672 36 1 6.4087 3.0509 -1.4088 37 1 7.5494 2.9723 -2.7732 38 1 5.0564 4.7278 -2.6366 39 1 6.7327 5.2879 -2.4280 40 1 5.9412 5.6903 -4.7435 41 1 7.2766 4.5133 -4.7202 42 1 6.5249 3.6159 -6.9272 43 1 4.8484 3.0558 -7.1360 44 1 5.1900 4.7931 -6.9511 45 1 3.8248 1.3926 -5.1046 46 1 4.9660 1.3140 -6.4684 47 1 5.1597 0.2158 -5.0808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330679076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = -34.215633 kcal Electronic energy + Delta-G solvation = -24448.569680 eV Core-core repulsion = 21245.251864 eV Total energy + Delta-G solvation = -3203.317816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.68378 -37.49902 -35.29230 -33.12758 -32.65118 -31.78844 -30.44594 -29.02639 -27.13272 -26.25405 -25.16329 -23.53135 -21.61524 -20.89080 -20.47913 -19.64997 -18.25191 -16.83675 -15.77357 -15.35220 -14.89459 -14.64463 -14.27413 -14.03737 -13.75394 -13.64436 -13.51092 -12.95819 -12.85235 -12.53688 -12.26911 -12.04098 -11.82538 -11.70542 -11.56058 -11.47751 -11.30763 -11.16298 -11.10306 -10.99585 -10.68049 -10.52049 -10.36914 -10.15937 -10.10673 -9.84596 -9.76133 -9.69068 -9.55224 -8.64533 -8.11559 -7.81313 -6.80965 -5.72306 -2.96757 3.44976 3.50700 3.52559 4.30127 4.45187 4.65632 4.84285 4.88514 4.94236 5.27453 5.42444 5.47794 5.54955 5.59473 5.61895 5.68031 5.74355 5.78778 5.91030 5.99405 6.00599 6.03069 6.06058 6.14118 6.19583 6.25028 6.32455 6.34958 6.38679 6.42217 6.52598 6.62667 6.62941 6.65208 6.81032 6.89066 6.91797 6.98368 7.15370 7.25739 7.70731 7.85869 8.34887 8.83237 9.25655 9.85335 10.01496 10.37344 11.37059 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.005979 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.168732 B = 4681.549176 C = 5686.955411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 N -0.575 5.575 4 C -0.243 4.243 5 H 0.074 0.926 6 C -0.001 4.001 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.294 1.294 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.164 3.836 13 C 0.531 3.469 14 O -0.534 6.534 15 N -0.740 5.740 16 C 0.161 3.839 17 H 0.073 0.927 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.086 4.086 22 H 0.070 0.930 23 C -0.147 4.147 24 C -0.092 4.092 25 H 0.072 0.928 26 C -0.145 4.145 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.251 0.749 33 H 0.032 0.968 34 H 0.099 0.901 35 H 0.382 0.618 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 0.170 -13.684 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 N -0.295 5.295 4 C -0.372 4.372 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.220 1.220 10 H -0.215 1.215 11 H -0.213 1.213 12 C 0.033 3.967 13 C 0.318 3.682 14 O -0.408 6.408 15 N -0.395 5.395 16 C 0.055 3.945 17 H 0.091 0.909 18 C -0.164 4.164 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.104 4.104 22 H 0.088 0.912 23 C -0.205 4.205 24 C -0.111 4.111 25 H 0.090 0.910 26 C -0.202 4.202 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.215 0.785 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.390 -0.215 -13.102 13.320 hybrid contribution -0.090 1.133 0.541 1.259 sum 2.299 0.919 -12.561 12.802 Atomic orbital electron populations 1.22325 0.99687 0.99021 1.01404 1.20689 0.91721 0.86461 0.99105 1.43878 1.74201 1.09387 1.02018 1.19154 1.32445 0.99379 0.86268 0.90774 1.24641 0.97610 0.99519 0.98074 1.69928 1.27382 1.21579 1.34813 0.86419 0.77658 0.81073 0.82095 1.21973 1.21459 1.21330 1.20650 0.89622 0.99827 0.86589 1.21952 0.91936 0.76538 0.77806 1.90493 1.60180 1.40278 1.49832 1.46267 1.10781 1.56580 1.25897 1.20575 0.83829 0.98612 0.91496 0.90925 1.21839 0.97492 0.94732 1.02287 1.21416 1.02577 0.96916 0.94108 1.21603 0.99150 0.98008 0.96161 1.21129 0.99982 0.94724 0.94603 0.91180 1.21892 1.01455 1.01223 0.95887 1.21423 0.99802 0.94595 0.95239 0.90967 1.21843 1.00314 0.98602 0.99481 0.93836 0.94389 0.92912 0.94783 0.93763 0.93840 0.95025 0.88309 0.78493 0.90417 0.93241 0.90931 0.93082 0.92667 0.92651 0.93044 0.92514 0.93092 0.92342 0.92931 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.23 37.16 0.38 -2.59 16 2 C 0.15 3.17 6.39 -4.04 -0.03 3.15 16 3 N -0.58 -14.42 2.02 -174.61 -0.35 -14.77 16 4 C -0.24 -6.72 9.70 -15.06 -0.15 -6.86 16 5 H 0.07 2.04 7.95 -52.48 -0.42 1.62 16 6 C 0.00 -0.03 4.88 -17.43 -0.09 -0.11 16 7 N -0.89 -24.61 8.98 55.49 0.50 -24.11 16 8 Si 0.90 21.92 29.62 -169.99 -5.04 16.89 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 C 0.16 3.77 5.42 -5.20 -0.03 3.74 16 13 C 0.53 12.25 5.85 -10.99 -0.06 12.19 16 14 O -0.53 -14.80 15.80 5.55 0.09 -14.71 16 15 N -0.74 -13.41 3.54 -53.81 -0.19 -13.60 16 16 C 0.16 2.67 2.23 -67.93 -0.15 2.52 16 17 H 0.07 1.39 7.58 -51.93 -0.39 0.99 16 18 C -0.12 -2.14 5.60 -26.73 -0.15 -2.29 16 19 C -0.11 -1.73 5.77 -26.73 -0.15 -1.88 16 20 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 21 C -0.09 -0.99 2.08 -90.62 -0.19 -1.18 16 22 H 0.07 0.86 6.50 -51.93 -0.34 0.52 16 23 C -0.15 -1.41 8.84 37.16 0.33 -1.08 16 24 C -0.09 -1.15 2.04 -90.62 -0.18 -1.34 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 C -0.15 -1.70 8.68 37.16 0.32 -1.38 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 31 H 0.04 0.98 8.05 -51.93 -0.42 0.57 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.10 2.44 6.33 -51.93 -0.33 2.11 16 35 H 0.38 6.12 6.65 -40.82 -0.27 5.85 16 36 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.27 7.60 -51.93 -0.39 0.87 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 46 H 0.05 0.52 6.43 -51.93 -0.33 0.19 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -30.61 357.31 -8.56 -39.17 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.66 Total: 4.40 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.29 Total: 1.36 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.04 Total: -52.49 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.09 Total: -14.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.04 Total: 16.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.61 -8.56 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330679076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.954 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds