Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46721 * 2 1 4 4 C 1.36932 * 120.00017 * 269.75250 * 3 2 1 5 5 H 1.08004 * 120.00298 * 322.10647 * 4 3 2 6 6 C 1.38816 * 119.99975 * 142.10022 * 4 3 2 7 7 N 1.31613 * 120.00133 * 156.97220 * 6 4 3 8 8 Si 1.86796 * 119.99915 * 336.97664 * 6 4 3 9 9 H 1.48496 * 109.47375 * 95.69905 * 8 6 4 10 10 H 1.48505 * 109.47349 * 215.70051 * 8 6 4 11 11 H 1.48501 * 109.47012 * 335.69734 * 8 6 4 12 12 C 1.46501 * 119.99852 * 89.76151 * 3 2 1 13 13 C 1.50696 * 109.47345 * 89.99272 * 12 3 2 14 14 O 1.21282 * 120.00128 * 0.02562 * 13 12 3 15 15 N 1.34781 * 120.00083 * 179.97438 * 13 12 3 16 16 C 1.46497 * 119.99999 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47036 * 34.99974 * 16 15 13 18 18 C 1.53004 * 109.47063 * 275.00019 * 16 15 13 19 19 C 1.52993 * 109.47120 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47363 * 59.99912 * 19 18 16 21 21 C 1.53004 * 109.47074 * 300.00116 * 20 19 18 22 22 H 1.08997 * 109.46744 * 179.97438 * 21 20 19 23 23 C 1.52990 * 109.47044 * 299.99636 * 21 20 19 24 24 C 1.52998 * 109.46945 * 155.00110 * 16 15 13 25 25 H 1.09000 * 109.47364 * 60.00065 * 24 16 15 26 26 C 1.52994 * 109.47106 * 299.99903 * 24 16 15 27 27 H 1.09004 * 109.46560 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46753 * 299.99464 * 1 2 3 29 29 H 1.08992 * 109.47209 * 59.99981 * 1 2 3 30 30 H 1.09001 * 109.46753 * 240.00536 * 2 1 3 31 31 H 1.08999 * 109.47002 * 120.00343 * 2 1 3 32 32 H 0.97002 * 120.00689 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46695 * 329.99294 * 12 3 2 34 34 H 1.08998 * 109.46824 * 209.99983 * 12 3 2 35 35 H 0.96996 * 119.99397 * 359.97438 * 15 13 12 36 36 H 1.09007 * 109.46945 * 300.00258 * 18 16 15 37 37 H 1.09003 * 109.47072 * 59.99859 * 18 16 15 38 38 H 1.09005 * 109.47231 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.47622 * 300.00165 * 19 18 16 40 40 H 1.08996 * 109.47603 * 179.97438 * 20 19 18 41 41 H 1.09007 * 109.46898 * 59.99733 * 20 19 18 42 42 H 1.09004 * 109.47654 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.47271 * 59.99861 * 23 21 20 44 44 H 1.09003 * 109.47382 * 300.00279 * 23 21 20 45 45 H 1.09000 * 109.46991 * 299.99527 * 26 24 16 46 46 H 1.08993 * 109.47412 * 60.00204 * 26 24 16 47 47 H 1.09003 * 109.47012 * 180.02562 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2513 2.0251 -1.1859 5 1 2.6733 1.4843 -2.0201 6 6 1.9450 3.3728 -1.3158 7 7 2.5498 4.0998 -2.2312 8 14 0.6747 4.1545 -0.1914 9 1 1.3603 4.8000 0.9568 10 1 -0.0936 5.1762 -0.9472 11 1 -0.2528 3.1087 0.3101 12 6 2.2574 2.0736 1.2687 13 6 3.6789 1.8374 1.7098 14 8 4.4196 1.1580 1.0310 15 7 4.1275 2.3820 2.8582 16 6 5.5096 2.1528 3.2867 17 1 6.1584 2.1080 2.4120 18 6 5.5936 0.8308 4.0523 19 6 7.0367 0.5917 4.5003 20 6 7.4848 1.7373 5.4102 21 6 7.4008 3.0594 4.6446 22 1 7.7195 3.8755 5.2929 23 6 8.3120 2.9967 3.4173 24 6 5.9580 3.2983 4.1963 25 1 5.3092 3.3431 5.0710 26 6 5.8740 4.6203 3.4308 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.3360 5.0416 -2.3218 33 1 1.5735 1.6905 2.0262 34 1 2.0909 3.1426 1.1362 35 1 3.5355 2.9262 3.4005 36 1 4.9446 0.8756 4.9270 37 1 5.2740 0.0147 3.4042 38 1 7.0965 -0.3499 5.0462 39 1 7.6861 0.5471 3.6260 40 1 8.5128 1.5668 5.7298 41 1 6.8354 1.7820 6.2846 42 1 8.2526 3.9387 2.8720 43 1 7.9930 2.1805 2.7691 44 1 9.3403 2.8263 3.7365 45 1 6.5230 4.5755 2.5562 46 1 4.8458 4.7908 3.1120 47 1 6.1940 5.4364 4.0787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330679077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = -35.542745 kcal Electronic energy + Delta-G solvation = -24017.344078 eV Core-core repulsion = 20813.968714 eV Total energy + Delta-G solvation = -3203.375364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.08080 -38.25801 -35.68889 -33.89840 -32.77973 -31.87801 -30.57240 -29.59949 -27.56026 -26.57425 -25.49220 -23.77074 -22.25240 -21.31641 -20.44290 -19.76265 -18.60057 -17.09281 -16.24338 -16.07903 -15.31740 -15.12934 -14.50102 -14.36512 -14.11889 -13.94847 -13.50128 -13.41138 -13.06205 -13.04338 -12.55636 -12.46070 -12.27408 -11.99520 -11.95307 -11.76705 -11.54273 -11.35307 -11.31785 -11.13823 -10.85947 -10.71877 -10.57797 -10.43192 -10.29029 -10.12045 -9.98112 -9.92139 -9.59119 -9.02931 -8.47924 -8.45292 -6.82721 -5.97348 -3.36947 3.22271 3.41022 3.46405 3.57871 3.72479 4.50019 4.56670 4.66217 4.75313 5.02761 5.04586 5.16546 5.29645 5.33687 5.35513 5.40310 5.44301 5.56258 5.59727 5.77644 5.78266 5.82351 5.91382 5.95164 5.95622 6.00716 6.03294 6.06617 6.16740 6.18377 6.19818 6.24491 6.30120 6.36560 6.38717 6.43642 6.53735 6.58491 6.85290 7.07150 7.09695 7.98653 8.18761 8.45087 8.93781 9.13975 9.71767 10.11383 11.18558 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.005208 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.511356 B = 5375.205230 C = 6013.995620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 N -0.580 5.580 4 C -0.255 4.255 5 H 0.079 0.921 6 C 0.033 3.967 7 N -0.896 5.896 8 Si 0.867 3.133 9 H -0.287 1.287 10 H -0.299 1.299 11 H -0.264 1.264 12 C 0.118 3.882 13 C 0.487 3.513 14 O -0.519 6.519 15 N -0.743 5.743 16 C 0.149 3.851 17 H 0.088 0.912 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.081 4.081 22 H 0.069 0.931 23 C -0.157 4.157 24 C -0.092 4.092 25 H 0.070 0.930 26 C -0.150 4.150 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.390 0.610 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -2.392 17.345 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 N -0.300 5.300 4 C -0.384 4.384 5 H 0.096 0.904 6 C -0.167 4.167 7 N -0.537 5.537 8 Si 0.696 3.304 9 H -0.216 1.216 10 H -0.226 1.226 11 H -0.188 1.188 12 C -0.013 4.013 13 C 0.272 3.728 14 O -0.392 6.392 15 N -0.397 5.397 16 C 0.044 3.956 17 H 0.106 0.894 18 C -0.166 4.166 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.100 4.100 22 H 0.088 0.912 23 C -0.214 4.214 24 C -0.111 4.111 25 H 0.089 0.911 26 C -0.207 4.207 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.223 0.777 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.625 -2.776 16.655 18.138 hybrid contribution -0.947 1.006 0.910 1.655 sum 5.677 -1.770 17.565 18.544 Atomic orbital electron populations 1.22340 0.99486 0.99312 1.01641 1.20830 0.91435 0.85827 0.99448 1.43740 1.73874 1.11478 1.00886 1.18778 1.35847 0.93391 0.90347 0.90362 1.25478 0.97976 0.96684 0.96591 1.69900 1.40671 1.06766 1.36317 0.87073 0.84217 0.78973 0.80103 1.21562 1.22642 1.18809 1.21327 0.90719 0.99102 0.90114 1.22817 0.92361 0.78581 0.79036 1.90603 1.57753 1.37900 1.52988 1.46452 1.12778 1.55184 1.25308 1.20909 0.84453 0.93068 0.97191 0.89424 1.21912 0.96444 0.98380 0.99869 1.21535 0.96643 0.97810 0.99656 1.21590 1.00898 0.94639 0.98054 1.21060 0.94506 0.97431 0.97017 0.91212 1.22033 0.98711 1.02655 0.97979 1.21376 0.96537 0.95044 0.98142 0.91143 1.21883 1.02603 0.95909 1.00323 0.94099 0.94105 0.92386 0.92759 0.94504 0.92784 0.91513 0.90337 0.77678 0.92316 0.91468 0.92197 0.91467 0.92119 0.92159 0.92273 0.91711 0.92994 0.92062 0.92287 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.24 37.16 0.38 -2.72 16 2 C 0.15 3.14 6.39 -4.04 -0.03 3.12 16 3 N -0.58 -14.17 1.56 -174.60 -0.27 -14.44 16 4 C -0.25 -7.32 9.90 -15.06 -0.15 -7.47 16 5 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 6 C 0.03 0.95 5.29 -17.43 -0.09 0.86 16 7 N -0.90 -27.68 13.97 55.49 0.78 -26.90 16 8 Si 0.87 21.44 25.10 -169.99 -4.27 17.17 16 9 H -0.29 -6.74 6.68 56.52 0.38 -6.36 16 10 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 11 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.12 2.55 5.00 -5.20 -0.03 2.52 16 13 C 0.49 10.22 7.86 -10.99 -0.09 10.13 16 14 O -0.52 -12.97 16.09 5.56 0.09 -12.88 16 15 N -0.74 -11.93 4.38 -53.81 -0.24 -12.17 16 16 C 0.15 2.13 1.62 -67.93 -0.11 2.02 16 17 H 0.09 1.51 5.87 -51.93 -0.30 1.21 16 18 C -0.13 -1.64 5.49 -26.73 -0.15 -1.79 16 19 C -0.12 -1.27 5.65 -26.73 -0.15 -1.42 16 20 C -0.11 -1.05 5.45 -26.73 -0.15 -1.20 16 21 C -0.08 -0.80 2.72 -90.65 -0.25 -1.05 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 C -0.16 -1.67 8.14 37.15 0.30 -1.37 16 24 C -0.09 -1.04 2.07 -90.65 -0.19 -1.23 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 C -0.15 -1.83 8.68 37.15 0.32 -1.50 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 1.16 8.04 -51.93 -0.42 0.75 16 31 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.08 1.80 3.37 -51.93 -0.18 1.63 16 35 H 0.39 5.24 8.39 -40.82 -0.34 4.89 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 43 H 0.06 0.79 4.81 -51.93 -0.25 0.54 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 46 H 0.06 0.79 7.44 -51.93 -0.39 0.40 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -32.81 353.93 -7.31 -40.12 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.37 Total: 4.88 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.36 Total: -1.12 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.27 Total: -53.51 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.27 Total: 17.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.81 -7.31 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330679077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.573 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds