Wall clock time and date at job start Tue Mar 31 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47051 * 2 1 4 4 C 1.36932 * 119.99705 * 264.03792 * 3 2 1 5 5 H 1.08003 * 119.99873 * 188.07664 * 4 3 2 6 6 C 1.38811 * 120.00329 * 8.07206 * 4 3 2 7 7 N 1.31614 * 120.00028 * 25.13097 * 6 4 3 8 8 Si 1.86803 * 120.00017 * 205.13017 * 6 4 3 9 9 H 1.48502 * 109.46897 * 84.98988 * 8 6 4 10 10 H 1.48494 * 109.47121 * 204.99035 * 8 6 4 11 11 H 1.48504 * 109.46935 * 324.99146 * 8 6 4 12 12 C 1.46497 * 119.99945 * 84.03280 * 3 2 1 13 13 C 1.50702 * 109.47471 * 270.00136 * 12 3 2 14 14 O 1.21273 * 120.00081 * 0.02562 * 13 12 3 15 15 N 1.34777 * 119.99674 * 179.97438 * 13 12 3 16 16 C 1.46497 * 119.99592 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47349 * 35.00247 * 16 15 13 18 18 C 1.52996 * 109.47465 * 275.00313 * 16 15 13 19 19 C 1.52999 * 109.47597 * 179.97438 * 18 16 15 20 20 C 1.53008 * 109.46829 * 59.99734 * 19 18 16 21 21 C 1.53000 * 109.47179 * 300.00122 * 20 19 18 22 22 H 1.09002 * 109.47496 * 300.00210 * 21 20 19 23 23 C 1.52998 * 109.47090 * 180.02562 * 21 20 19 24 24 C 1.52998 * 109.46985 * 155.00142 * 16 15 13 25 25 H 1.09002 * 109.47101 * 60.00426 * 24 16 15 26 26 C 1.53005 * 109.47402 * 300.00028 * 24 16 15 27 27 H 1.09004 * 109.47085 * 299.99969 * 1 2 3 28 28 H 1.09000 * 109.47380 * 60.00344 * 1 2 3 29 29 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47224 * 239.99712 * 2 1 3 31 31 H 1.08999 * 109.46910 * 119.99899 * 2 1 3 32 32 H 0.96999 * 120.00411 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46901 * 149.99928 * 12 3 2 34 34 H 1.09001 * 109.46991 * 30.00486 * 12 3 2 35 35 H 0.97000 * 120.00470 * 0.02562 * 15 13 12 36 36 H 1.09002 * 109.47170 * 299.99910 * 18 16 15 37 37 H 1.09003 * 109.47043 * 59.99843 * 18 16 15 38 38 H 1.08994 * 109.47705 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.46810 * 300.00158 * 19 18 16 40 40 H 1.09002 * 109.46857 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.46587 * 60.00722 * 20 19 18 42 42 H 1.09002 * 109.47101 * 300.00425 * 23 21 20 43 43 H 1.09005 * 109.47023 * 59.99842 * 23 21 20 44 44 H 1.09000 * 109.47467 * 180.02562 * 23 21 20 45 45 H 1.08991 * 109.46890 * 300.00056 * 26 24 16 46 46 H 1.09003 * 109.46277 * 59.99962 * 26 24 16 47 47 H 1.08994 * 109.46933 * 179.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3626 1.9856 -1.1795 5 1 2.8437 2.9526 -1.1705 6 6 2.0936 1.3556 -2.3867 7 7 1.1178 0.4760 -2.4669 8 14 3.1165 1.7560 -3.8976 9 1 4.3451 0.9219 -3.8989 10 1 2.3243 1.4723 -5.1211 11 1 3.4933 3.1923 -3.8738 12 6 2.1381 2.1158 1.2618 13 6 0.8469 2.8387 1.5469 14 8 -0.0821 2.7488 0.7726 15 7 0.7243 3.5843 2.6629 16 6 -0.5307 4.2875 2.9398 17 1 -1.3693 3.6863 2.5882 18 6 -0.5306 5.6353 2.2157 19 6 -1.8416 6.3694 2.5043 20 6 -1.9761 6.5998 4.0109 21 6 -1.9763 5.2520 4.7350 22 1 -2.8145 4.6505 4.3831 23 6 -2.1114 5.4823 6.2415 24 6 -0.6646 4.5179 4.4464 25 1 0.1739 5.1192 4.7979 26 6 -0.6647 3.1700 5.1705 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9300 0.0354 -3.3104 33 1 2.9502 2.8389 1.1856 34 1 2.3492 1.4164 2.0707 35 1 1.4672 3.6559 3.2825 36 1 0.3079 6.2365 2.5673 37 1 -0.4352 5.4711 1.1424 38 1 -1.8414 7.3298 1.9889 39 1 -2.6798 5.7680 2.1524 40 1 -2.9103 7.1224 4.2166 41 1 -1.1379 7.2012 4.3627 42 1 -1.2734 6.0839 6.5936 43 1 -3.0456 6.0052 6.4467 44 1 -2.1111 4.5221 6.7574 45 1 -1.5032 2.5689 4.8190 46 1 0.2691 2.6469 4.9644 47 1 -0.7596 3.3343 6.2438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330679078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:12 Heat of formation + Delta-G solvation = -32.507091 kcal Electronic energy + Delta-G solvation = -23812.754576 eV Core-core repulsion = 20609.510848 eV Total energy + Delta-G solvation = -3203.243728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.83782 -38.08210 -35.48744 -33.87195 -33.06620 -31.32090 -30.49689 -29.30646 -27.31164 -26.25166 -25.41067 -23.27038 -21.69110 -21.05176 -20.33326 -20.06434 -19.18844 -16.66646 -16.37095 -15.67847 -14.86043 -14.77953 -14.60938 -14.44699 -14.16182 -13.92954 -13.50021 -13.08136 -12.92157 -12.60384 -12.48618 -12.17133 -11.86708 -11.80757 -11.73738 -11.55387 -11.52242 -11.22302 -10.99797 -10.85855 -10.76137 -10.66528 -10.50105 -10.34943 -10.29997 -10.02298 -9.87987 -9.59814 -9.23825 -8.85850 -8.34569 -8.20502 -6.81187 -5.65698 -2.97463 3.45003 3.51683 3.53296 3.67531 3.80524 4.56870 4.58258 4.65380 4.74404 4.98394 5.12733 5.33378 5.36268 5.40628 5.42675 5.45905 5.49722 5.58411 5.61753 5.69875 5.74058 5.84552 5.87349 5.93744 5.98030 6.02858 6.15968 6.22010 6.22681 6.23508 6.32421 6.33709 6.45904 6.55153 6.70115 7.09660 7.13538 7.26441 7.34766 7.73952 7.92248 8.23303 8.37409 8.45348 9.23926 9.32834 9.93081 10.36843 11.37588 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.004163 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.226555 B = 6725.088935 C = 7186.330371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.166 3.834 3 N -0.569 5.569 4 C -0.247 4.247 5 H 0.073 0.927 6 C 0.000 4.000 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.283 1.283 12 C 0.131 3.869 13 C 0.469 3.531 14 O -0.506 6.506 15 N -0.745 5.745 16 C 0.152 3.848 17 H 0.080 0.920 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.085 4.085 22 H 0.071 0.929 23 C -0.147 4.147 24 C -0.090 4.090 25 H 0.071 0.929 26 C -0.147 4.147 27 H 0.017 0.983 28 H 0.091 0.909 29 H 0.009 0.991 30 H 0.090 0.910 31 H 0.000 1.000 32 H 0.250 0.750 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.388 0.612 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 8.921 17.218 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.042 3.958 3 N -0.288 5.288 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.198 4.198 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C -0.001 4.001 13 C 0.253 3.747 14 O -0.378 6.378 15 N -0.400 5.400 16 C 0.047 3.953 17 H 0.098 0.902 18 C -0.167 4.167 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.104 4.104 22 H 0.089 0.911 23 C -0.204 4.204 24 C -0.109 4.109 25 H 0.089 0.911 26 C -0.204 4.204 27 H 0.036 0.964 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.108 0.892 31 H 0.018 0.982 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.221 0.779 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.989 8.686 16.406 18.987 hybrid contribution 0.557 0.421 -0.497 0.857 sum -3.432 9.107 15.909 18.649 Atomic orbital electron populations 1.22253 0.98595 0.96984 1.02137 1.20916 0.93023 0.83875 0.98014 1.44240 1.73854 1.09661 1.01030 1.19224 1.31302 1.03520 0.83579 0.90944 1.24731 0.97707 1.00105 0.97211 1.70223 1.27076 1.31356 1.24702 0.86342 0.80270 0.77772 0.82707 1.21589 1.21991 1.20821 1.20922 0.92990 0.95218 0.91008 1.23498 0.93007 0.78491 0.79729 1.90680 1.40711 1.60615 1.45752 1.46592 1.15462 1.52153 1.25821 1.20792 0.88862 0.92667 0.93011 0.90194 1.21917 0.97113 0.96100 1.01603 1.21494 0.98171 1.00206 0.95654 1.21617 1.01473 0.96662 0.95350 1.21135 0.97532 0.96395 0.95329 0.91070 1.21877 1.01378 1.01609 0.95578 1.21408 0.97902 0.96795 0.94820 0.91110 1.21861 1.02373 0.96578 0.99606 0.96394 0.89068 0.97239 0.89246 0.98169 0.93921 0.91017 0.91695 0.77891 0.92347 0.91241 0.92095 0.91888 0.92204 0.92104 0.92836 0.92909 0.92355 0.92727 0.92359 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.71 37.16 0.32 -3.29 16 2 C 0.17 4.21 5.64 -4.04 -0.02 4.19 16 3 N -0.57 -14.47 2.12 -174.61 -0.37 -14.84 16 4 C -0.25 -6.90 9.70 -15.06 -0.15 -7.04 16 5 H 0.07 1.99 7.93 -52.48 -0.42 1.57 16 6 C 0.00 0.01 4.90 -17.43 -0.09 -0.08 16 7 N -0.89 -26.03 8.60 55.49 0.48 -25.55 16 8 Si 0.90 22.14 29.62 -169.99 -5.04 17.11 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.13 2.65 6.19 -5.19 -0.03 2.62 16 13 C 0.47 9.46 7.51 -10.98 -0.08 9.38 16 14 O -0.51 -12.79 13.69 5.56 0.08 -12.71 16 15 N -0.75 -11.12 4.38 -53.81 -0.24 -11.36 16 16 C 0.15 2.12 1.90 -67.93 -0.13 1.99 16 17 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 18 C -0.13 -1.76 5.49 -26.73 -0.15 -1.91 16 19 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 20 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 21 C -0.08 -0.81 2.25 -90.59 -0.20 -1.01 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 24 C -0.09 -0.94 1.83 -90.59 -0.17 -1.11 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 C -0.15 -1.50 8.68 37.16 0.32 -1.18 16 27 H 0.02 0.44 6.42 -51.93 -0.33 0.11 16 28 H 0.09 2.71 6.35 -51.93 -0.33 2.38 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.48 5.83 -51.93 -0.30 2.18 16 31 H 0.00 0.00 7.98 -51.93 -0.41 -0.41 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 34 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 35 H 0.39 4.60 8.39 -40.82 -0.34 4.26 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 47 H 0.05 0.48 6.43 -51.93 -0.33 0.14 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -32.00 355.29 -8.69 -40.69 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.62 Total: 2.29 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.34 Total: -0.98 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.13 Total: -51.75 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.04 Total: 17.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.00 -8.69 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330679078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.183 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds