Wall clock time and date at job start Tue Mar 31 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.47209 * 2 1 4 4 C 1.46897 * 110.99835 * 297.51580 * 3 2 1 5 5 C 1.50707 * 109.46937 * 292.34041 * 4 3 2 6 6 H 1.08004 * 119.99743 * 354.95945 * 5 4 3 7 7 C 1.37874 * 120.00163 * 174.96426 * 5 4 3 8 8 N 1.31518 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00086 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47311 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47218 * 119.99680 * 9 7 5 12 12 H 1.48502 * 109.47245 * 239.99624 * 9 7 5 13 13 C 1.46901 * 110.99668 * 61.46210 * 3 2 1 14 14 C 1.50700 * 109.47037 * 66.04906 * 13 3 2 15 15 O 1.21284 * 119.99944 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00353 * 179.97438 * 14 13 3 17 17 C 1.46500 * 120.00223 * 180.02562 * 16 14 13 18 18 H 1.08989 * 109.47293 * 34.99928 * 17 16 14 19 19 C 1.53001 * 109.46997 * 274.99348 * 17 16 14 20 20 C 1.53004 * 109.47126 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.46722 * 60.00776 * 20 19 17 22 22 C 1.52996 * 109.47073 * 299.99815 * 21 20 19 23 23 C 1.53003 * 109.46978 * 155.00047 * 17 16 14 24 24 H 1.09003 * 109.47405 * 60.00006 * 23 17 16 25 25 C 1.52996 * 109.47073 * 299.99813 * 23 17 16 26 26 H 1.09000 * 109.46660 * 299.08155 * 1 2 3 27 27 H 1.08995 * 109.46992 * 59.08300 * 1 2 3 28 28 H 1.08998 * 109.46634 * 179.08663 * 1 2 3 29 29 H 1.09002 * 109.47264 * 240.00227 * 2 1 3 30 30 H 1.08995 * 109.47575 * 120.00339 * 2 1 3 31 31 H 1.08997 * 109.47634 * 52.34304 * 4 3 2 32 32 H 1.09004 * 109.46742 * 172.34750 * 4 3 2 33 33 H 0.97001 * 119.99979 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47394 * 306.05092 * 13 3 2 35 35 H 1.08995 * 109.46905 * 186.04786 * 13 3 2 36 36 H 0.97005 * 119.99990 * 0.02562 * 16 14 13 37 37 H 1.09005 * 109.46548 * 60.00211 * 19 17 16 38 38 H 1.08998 * 109.47464 * 300.00615 * 19 17 16 39 39 H 1.08994 * 109.46952 * 300.00639 * 20 19 17 40 40 H 1.09004 * 109.46773 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.47092 * 59.99626 * 21 20 19 42 42 H 1.08997 * 109.46713 * 180.02562 * 21 20 19 43 43 H 1.08998 * 109.47298 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.47162 * 300.00342 * 22 21 20 45 45 H 1.08998 * 109.47007 * 299.99863 * 25 23 17 46 46 H 1.08997 * 109.47393 * 59.99819 * 25 23 17 47 47 H 1.09005 * 109.46935 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5978 2.0925 -1.2163 5 6 2.3001 1.5003 -2.4110 6 1 3.0507 0.7362 -2.2722 7 6 1.9845 1.9340 -3.6811 8 7 1.0702 2.8642 -3.8502 9 14 2.8544 1.1995 -5.1620 10 1 3.8320 0.1788 -4.7059 11 1 1.8554 0.5633 -6.0577 12 1 3.5680 2.2728 -5.8996 13 6 1.5774 2.0997 1.2048 14 6 2.2291 1.4890 2.4187 15 8 2.9876 0.5512 2.2925 16 7 1.9698 1.9857 3.6444 17 6 2.6037 1.3924 4.8244 18 1 3.6109 1.0636 4.5690 19 6 1.7799 0.1929 5.2970 20 6 2.4423 -0.4272 6.5290 21 6 2.5146 0.6143 7.6476 22 6 3.3383 1.8139 7.1750 23 6 2.6755 2.4341 5.9428 24 1 1.6682 2.7630 6.1982 25 6 3.4993 3.6337 5.4702 26 1 -0.3632 0.4995 0.8981 27 1 -0.3633 0.5280 -0.8816 28 1 -0.3632 -1.0275 -0.0164 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.5198 1.9901 -1.3409 32 1 1.8550 3.1483 -1.1301 33 1 0.8479 3.1691 -4.7438 34 1 0.4941 2.0220 1.2963 35 1 1.8613 3.1493 1.1294 36 1 1.3634 2.7361 3.7454 37 1 1.7287 -0.5492 4.5003 38 1 0.7726 0.5218 5.5524 39 1 3.4494 -0.7561 6.2731 40 1 1.8556 -1.2820 6.8654 41 1 1.5074 0.9433 7.9033 42 1 2.9869 0.1727 8.5251 43 1 3.3902 2.5556 7.9720 44 1 4.3455 1.4849 6.9192 45 1 4.5066 3.3048 5.2149 46 1 3.0277 4.0751 4.5923 47 1 3.5508 4.3756 6.2672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330977396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:48 Heat of formation + Delta-G solvation = -56.283246 kcal Electronic energy + Delta-G solvation = -23226.528851 eV Core-core repulsion = 20022.254111 eV Total energy + Delta-G solvation = -3204.274740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09124 -38.44699 -36.40697 -34.05352 -32.62819 -32.53564 -30.27330 -29.34514 -27.94624 -26.41356 -25.00712 -23.09224 -22.64788 -21.46281 -20.41875 -20.14214 -19.12116 -16.67338 -16.32879 -16.03405 -15.48841 -14.85796 -14.73460 -14.60392 -14.37909 -14.24273 -13.84988 -13.50997 -13.36263 -12.91792 -12.71010 -12.55258 -12.22044 -12.11418 -11.79627 -11.69592 -11.47871 -11.33879 -11.13027 -11.10231 -10.87494 -10.76375 -10.68411 -10.65022 -10.50340 -10.33436 -9.96537 -9.88571 -9.30890 -8.97509 -8.81588 -8.39738 -7.10682 -5.99353 -3.99226 3.07475 3.32802 3.34359 3.41758 3.48696 4.40016 4.47104 4.49584 4.64205 4.86587 4.97717 5.10022 5.16858 5.21231 5.23675 5.27617 5.36191 5.38213 5.51475 5.53566 5.68029 5.75754 5.79587 5.80683 5.82473 5.92338 5.95348 5.97164 5.98109 6.08744 6.12039 6.16645 6.23363 6.27560 6.53575 6.70125 6.74974 7.06888 7.31358 7.45862 7.70751 7.88560 8.12861 8.25031 8.57057 8.67550 9.10085 9.64807 11.11484 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.003351 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.907652 B = 8354.893893 C = 8647.670645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.516 5.516 4 C 0.188 3.812 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.032 3.968 14 C 0.516 3.484 15 O -0.519 6.519 16 N -0.737 5.737 17 C 0.153 3.847 18 H 0.086 0.914 19 C -0.130 4.130 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.097 4.097 24 H 0.073 0.927 25 C -0.148 4.148 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.004 0.996 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.395 0.605 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -0.701 22.971 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.240 5.240 4 C 0.063 3.937 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.100 4.100 14 C 0.303 3.697 15 O -0.393 6.393 16 N -0.390 5.390 17 C 0.048 3.952 18 H 0.104 0.896 19 C -0.168 4.168 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.116 4.116 24 H 0.091 0.909 25 C -0.205 4.205 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.022 0.978 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.474 -1.304 22.696 22.738 hybrid contribution -0.922 0.192 -0.859 1.275 sum -0.448 -1.112 21.836 21.869 Atomic orbital electron populations 1.22419 0.99996 1.00994 1.01402 1.22113 0.91258 0.91113 1.02738 1.62095 1.59088 1.01957 1.00892 1.19840 0.94891 0.93635 0.85330 1.21196 1.21114 1.21602 0.89971 0.91720 1.24972 0.95370 0.95319 0.99022 1.69967 1.32153 1.29775 1.22248 0.86454 0.79499 0.79083 0.82498 1.19589 1.21184 1.21089 1.21979 0.97749 0.99480 0.90784 1.20977 0.81411 0.83350 0.83982 1.90635 1.35236 1.27599 1.85798 1.46142 1.49714 1.37021 1.06114 1.20896 0.97710 0.92336 0.84256 0.89600 1.21930 0.99087 0.97985 0.97827 1.21495 1.01268 0.97835 0.94910 1.21566 1.00301 0.95990 0.97961 1.21565 0.99399 0.97300 0.96649 1.21403 1.00119 0.95317 0.94806 0.90883 1.21827 1.00364 0.97192 1.01128 0.94231 0.91391 0.93392 0.90233 0.91055 0.97793 0.95783 0.93086 0.92735 0.88845 0.77104 0.91303 0.92069 0.91747 0.91933 0.92029 0.92013 0.91698 0.91654 0.92500 0.92230 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.06 1.19 5.55 -3.82 -0.02 1.17 16 3 N -0.52 -11.58 4.43 -237.51 -1.05 -12.64 16 4 C 0.19 4.87 4.54 -4.97 -0.02 4.85 16 5 C -0.50 -14.26 8.40 -34.44 -0.29 -14.55 16 6 H 0.06 1.88 7.42 -52.48 -0.39 1.49 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.03 0.57 5.23 -4.98 -0.03 0.54 16 14 C 0.52 8.55 7.51 -10.99 -0.08 8.46 16 15 O -0.52 -10.54 13.98 5.55 0.08 -10.46 16 16 N -0.74 -8.85 4.38 -53.81 -0.24 -9.09 16 17 C 0.15 1.68 1.90 -67.93 -0.13 1.55 16 18 H 0.09 1.16 7.58 -51.94 -0.39 0.77 16 19 C -0.13 -1.36 5.49 -26.73 -0.15 -1.51 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 22 C -0.11 -0.82 5.21 -26.71 -0.14 -0.96 16 23 C -0.10 -0.81 2.30 -90.59 -0.21 -1.02 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 C -0.15 -1.25 9.04 37.16 0.34 -0.92 16 26 H 0.04 0.67 6.35 -51.93 -0.33 0.34 16 27 H 0.07 1.44 6.26 -51.93 -0.32 1.11 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 30 H 0.07 1.49 5.86 -51.93 -0.30 1.19 16 31 H 0.00 0.12 5.99 -51.93 -0.31 -0.19 16 32 H 0.02 0.66 7.90 -51.93 -0.41 0.25 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 0.90 6.06 -51.93 -0.31 0.58 16 35 H 0.09 1.56 7.91 -51.93 -0.41 1.15 16 36 H 0.40 3.73 8.39 -40.82 -0.34 3.39 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -31.83 358.84 -9.38 -41.21 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.49 Total: 0.92 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.80 Total: -6.36 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.55 Total: -47.71 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.83 -9.38 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330977396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.076 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds