Wall clock time and date at job start Tue Mar 31 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47139 * 2 1 4 4 C 1.46908 * 110.99887 * 59.76404 * 3 2 1 5 5 C 1.50703 * 109.46791 * 66.04392 * 4 3 2 6 6 H 1.07997 * 119.99997 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00009 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99922 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00280 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47433 * 270.00590 * 9 7 5 11 11 H 1.48501 * 109.47248 * 149.99986 * 9 7 5 12 12 H 1.48509 * 109.47054 * 30.00632 * 9 7 5 13 13 C 1.46898 * 110.99937 * 295.81708 * 3 2 1 14 14 C 1.50701 * 109.46637 * 288.23095 * 13 3 2 15 15 O 1.21281 * 120.00223 * 354.27094 * 14 13 3 16 16 N 1.34780 * 119.99760 * 174.27018 * 14 13 3 17 17 C 1.46497 * 119.99912 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47089 * 324.99482 * 17 16 14 19 19 C 1.53001 * 109.47286 * 85.00007 * 17 16 14 20 20 C 1.52996 * 109.47228 * 59.99839 * 19 17 16 21 21 C 1.53005 * 109.46916 * 60.00340 * 20 19 17 22 22 C 1.53001 * 109.46894 * 299.99864 * 21 20 19 23 23 C 1.52996 * 109.47228 * 60.00327 * 22 21 20 24 24 H 1.08994 * 109.47170 * 59.99722 * 23 22 21 25 25 C 1.53001 * 109.47228 * 179.97438 * 23 22 21 26 26 H 1.08998 * 109.46929 * 180.33760 * 1 2 3 27 27 H 1.08998 * 109.46956 * 300.33514 * 1 2 3 28 28 H 1.08993 * 109.47502 * 60.33414 * 1 2 3 29 29 H 1.09002 * 109.46885 * 240.00132 * 2 1 3 30 30 H 1.08999 * 109.47385 * 120.00038 * 2 1 3 31 31 H 1.09005 * 109.47207 * 306.05046 * 4 3 2 32 32 H 1.08999 * 109.47169 * 186.04651 * 4 3 2 33 33 H 0.97003 * 120.00138 * 359.97438 * 8 7 5 34 34 H 1.08999 * 109.47661 * 48.23141 * 13 3 2 35 35 H 1.09000 * 109.47160 * 168.23842 * 13 3 2 36 36 H 0.97000 * 119.99953 * 359.97438 * 16 14 13 37 37 H 1.09006 * 109.46741 * 180.02562 * 19 17 16 38 38 H 1.08999 * 109.47275 * 299.99799 * 19 17 16 39 39 H 1.08994 * 109.47170 * 300.00278 * 20 19 17 40 40 H 1.09005 * 109.47035 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.47105 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.47252 * 59.99988 * 21 20 19 43 43 H 1.09004 * 109.47333 * 300.00207 * 22 21 20 44 44 H 1.08999 * 109.47275 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.47051 * 179.97438 * 25 23 22 46 46 H 1.08999 * 109.47275 * 300.00039 * 25 23 22 47 47 H 1.09004 * 109.47333 * 59.99881 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5441 2.1115 1.1849 5 6 2.1614 1.5129 2.4225 6 1 2.8396 0.6767 2.3373 7 6 1.8613 2.0334 3.6635 8 7 1.0358 3.0520 3.7672 9 14 2.6270 1.2919 5.1975 10 1 1.7512 0.2098 5.7144 11 1 2.7775 2.3446 6.2340 12 1 3.9612 0.7318 4.8635 13 6 1.6321 2.0804 -1.2345 14 6 2.4412 1.5450 -2.3877 15 8 3.3311 0.7463 -2.1851 16 7 2.1759 1.9539 -3.6443 17 6 2.9620 1.4331 -4.7654 18 1 3.9928 1.2794 -4.4460 19 6 2.3681 0.1018 -5.2299 20 6 0.9213 0.3176 -5.6783 21 6 0.8895 1.3208 -6.8331 22 6 1.4834 2.6521 -6.3686 23 6 2.9302 2.4363 -5.9202 24 1 3.5151 2.0488 -6.7543 25 6 3.5244 3.7677 -5.4563 26 1 -0.3633 -1.0276 0.0061 27 1 -0.3633 0.5190 0.8870 28 1 -0.3634 0.5086 -0.8929 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.4585 2.0346 1.2469 32 1 1.8301 3.1604 1.1071 33 1 0.6384 3.4373 2.9706 34 1 0.5720 1.9155 -1.4270 35 1 1.8196 3.1485 -1.1241 36 1 1.4639 2.5924 -3.8064 37 1 2.9534 -0.2859 -6.0638 38 1 2.3907 -0.6129 -4.4073 39 1 0.3364 0.7051 -4.8442 40 1 0.4983 -0.6309 -6.0096 41 1 -0.1413 1.4748 -7.1522 42 1 1.4744 0.9333 -7.6672 43 1 0.8985 3.0396 -5.5344 44 1 1.4604 3.3669 -7.1911 45 1 4.5550 3.6139 -5.1365 46 1 3.5017 4.4821 -6.2793 47 1 2.9395 4.1557 -4.6223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330977397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:50 Heat of formation + Delta-G solvation = -56.655557 kcal Electronic energy + Delta-G solvation = -23556.192869 eV Core-core repulsion = 20351.901985 eV Total energy + Delta-G solvation = -3204.290884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32630 -38.43419 -36.55137 -33.60160 -32.78506 -32.70424 -30.50145 -29.52549 -27.77236 -26.38781 -24.80700 -23.21933 -22.74525 -21.64814 -21.04509 -19.52030 -19.08771 -16.98694 -16.38123 -15.92081 -15.68545 -15.30011 -14.92576 -14.59088 -14.29375 -13.92655 -13.71237 -13.53483 -13.49685 -13.03747 -12.98970 -12.40197 -12.16118 -12.02965 -11.93998 -11.76011 -11.66216 -11.49508 -11.26466 -11.17785 -11.13101 -10.77889 -10.65023 -10.51589 -10.35313 -10.19411 -10.06061 -9.98157 -9.37070 -8.85211 -8.60535 -8.33778 -7.22071 -6.33106 -4.00831 3.04719 3.32764 3.47635 3.52383 3.68471 4.38704 4.46964 4.52302 4.56487 4.84715 4.93880 4.96949 5.10593 5.16868 5.23625 5.30455 5.37326 5.40770 5.42716 5.55625 5.60968 5.63447 5.69485 5.71797 5.79685 5.84221 5.86061 5.95341 5.98590 6.04424 6.06528 6.10264 6.15140 6.18846 6.39403 6.58053 6.67803 6.89311 7.07497 7.16985 7.63954 7.85812 8.03241 8.33525 8.63453 8.65292 8.91481 9.68692 11.06139 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030009 B = 0.003632 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.837501 B = 7708.147338 C = 7963.132293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 N -0.508 5.508 4 C 0.179 3.821 5 C -0.582 4.582 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 1.074 2.926 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.287 1.287 13 C 0.030 3.970 14 C 0.515 3.485 15 O -0.517 6.517 16 N -0.732 5.732 17 C 0.153 3.847 18 H 0.086 0.914 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.098 4.098 24 H 0.081 0.919 25 C -0.148 4.148 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.082 0.918 31 H -0.010 1.010 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.394 0.606 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 -1.177 -22.637 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.065 4.065 3 N -0.232 5.232 4 C 0.054 3.946 5 C -0.621 4.621 6 H 0.076 0.924 7 C -0.189 4.189 8 N -0.554 5.554 9 Si 0.902 3.098 10 H -0.216 1.216 11 H -0.211 1.211 12 H -0.213 1.213 13 C -0.102 4.102 14 C 0.301 3.699 15 O -0.390 6.390 16 N -0.387 5.387 17 C 0.048 3.952 18 H 0.104 0.896 19 C -0.169 4.169 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.117 4.117 24 H 0.099 0.901 25 C -0.205 4.205 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.007 0.993 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.046 -1.646 -20.779 20.845 hybrid contribution -1.399 0.285 -1.868 2.352 sum -1.445 -1.361 -22.648 22.735 Atomic orbital electron populations 1.22412 0.99753 1.01145 1.01480 1.21991 0.91380 0.90856 1.02256 1.61955 1.59222 1.01890 1.00088 1.19943 0.93538 0.93541 0.87579 1.21982 1.29845 1.18892 0.91342 0.92365 1.25821 0.96056 0.95593 1.01466 1.70782 1.28995 1.22762 1.32879 0.83470 0.75759 0.75569 0.74983 1.21582 1.21100 1.21332 1.22009 0.96812 0.99994 0.91408 1.20920 0.84308 0.81308 0.83347 1.90663 1.31085 1.32945 1.84336 1.46160 1.38328 1.48041 1.06201 1.20847 0.96255 0.92424 0.85671 0.89611 1.21917 0.96236 0.97630 1.01141 1.21491 0.96999 0.98944 0.98124 1.21548 1.00614 0.95377 0.98137 1.21602 0.95453 0.97420 1.00831 1.21410 0.96850 0.95886 0.97536 0.90069 1.21821 1.01200 0.96282 1.01203 0.93165 0.91385 0.94119 0.92095 0.89966 0.99252 0.96465 0.92444 0.92854 0.88895 0.77112 0.91451 0.91282 0.91880 0.92234 0.92112 0.92022 0.92040 0.91751 0.92447 0.92677 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.50 9.27 37.16 0.34 -3.15 16 2 C 0.06 1.33 5.57 -3.82 -0.02 1.31 16 3 N -0.51 -11.44 4.30 -237.50 -1.02 -12.46 16 4 C 0.18 4.62 3.78 -4.97 -0.02 4.60 16 5 C -0.58 -16.75 8.52 -34.44 -0.29 -17.04 16 6 H 0.06 1.72 7.10 -52.49 -0.37 1.34 16 7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 8 N -0.92 -27.92 13.65 55.43 0.76 -27.17 16 9 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.03 0.53 5.33 -4.98 -0.03 0.50 16 14 C 0.51 8.57 7.38 -10.98 -0.08 8.49 16 15 O -0.52 -10.68 14.78 5.56 0.08 -10.60 16 16 N -0.73 -8.77 3.54 -53.80 -0.19 -8.96 16 17 C 0.15 1.66 2.23 -67.93 -0.15 1.51 16 18 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 19 C -0.13 -1.35 5.60 -26.73 -0.15 -1.50 16 20 C -0.12 -1.05 5.77 -26.73 -0.15 -1.20 16 21 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 22 C -0.12 -0.82 5.03 -26.73 -0.13 -0.95 16 23 C -0.10 -0.80 2.51 -90.62 -0.23 -1.02 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 C -0.15 -1.23 9.04 37.16 0.34 -0.90 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.43 6.25 -51.93 -0.32 1.10 16 28 H 0.04 0.67 6.29 -51.93 -0.33 0.35 16 29 H 0.06 1.24 6.55 -51.93 -0.34 0.90 16 30 H 0.08 1.89 6.86 -51.93 -0.36 1.54 16 31 H -0.01 -0.26 5.85 -51.93 -0.30 -0.57 16 32 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 33 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 34 H 0.05 0.86 5.95 -51.93 -0.31 0.55 16 35 H 0.09 1.57 7.81 -51.93 -0.41 1.17 16 36 H 0.39 3.86 6.66 -40.82 -0.27 3.59 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.62 7.60 -51.93 -0.39 0.22 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.44 6.51 -51.93 -0.34 0.10 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -32.65 353.74 -9.20 -41.85 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.24 Total: 1.32 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.83 Total: -10.08 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.45 Total: -48.59 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.65 -9.20 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330977397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.802 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds