Wall clock time and date at job start Tue Mar 31 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.46815 * 2 1 4 4 C 1.46907 * 110.99870 * 297.50658 * 3 2 1 5 5 C 1.50690 * 109.47194 * 292.34939 * 4 3 2 6 6 H 1.07997 * 120.00582 * 354.95848 * 5 4 3 7 7 C 1.37884 * 120.00124 * 174.96043 * 5 4 3 8 8 N 1.31518 * 119.99722 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00383 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47384 * 59.99383 * 9 7 5 11 11 H 1.48494 * 109.47200 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46920 * 299.99791 * 9 7 5 13 13 C 1.46894 * 111.00097 * 61.46415 * 3 2 1 14 14 C 1.50700 * 109.47178 * 66.04373 * 13 3 2 15 15 O 1.21277 * 119.99757 * 0.02562 * 14 13 3 16 16 N 1.34776 * 119.99797 * 179.97438 * 14 13 3 17 17 C 1.46503 * 119.99893 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.46841 * 34.72119 * 17 16 14 19 19 C 1.52999 * 109.47085 * 274.72403 * 17 16 14 20 20 C 1.52999 * 109.47253 * 300.00115 * 19 17 16 21 21 C 1.53004 * 109.47008 * 300.00101 * 20 19 17 22 22 C 1.53005 * 109.47104 * 59.99375 * 21 20 19 23 23 C 1.52995 * 109.47488 * 300.00479 * 22 21 20 24 24 H 1.08996 * 109.46895 * 300.00108 * 23 22 21 25 25 C 1.52999 * 109.47043 * 179.97438 * 23 22 21 26 26 H 1.09003 * 109.46648 * 179.09042 * 1 2 3 27 27 H 1.09001 * 109.46927 * 299.08150 * 1 2 3 28 28 H 1.08995 * 109.47350 * 59.09216 * 1 2 3 29 29 H 1.08997 * 109.46923 * 239.99893 * 2 1 3 30 30 H 1.08996 * 109.47040 * 119.99899 * 2 1 3 31 31 H 1.08998 * 109.46613 * 52.34993 * 4 3 2 32 32 H 1.08997 * 109.46613 * 172.34640 * 4 3 2 33 33 H 0.96998 * 120.00315 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47109 * 306.04326 * 13 3 2 35 35 H 1.09001 * 109.47069 * 186.04806 * 13 3 2 36 36 H 0.97003 * 120.00411 * 359.72489 * 16 14 13 37 37 H 1.09005 * 109.47122 * 59.99462 * 19 17 16 38 38 H 1.08996 * 109.47494 * 179.97438 * 19 17 16 39 39 H 1.08996 * 109.47017 * 59.99529 * 20 19 17 40 40 H 1.09000 * 109.47748 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.47315 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46632 * 300.00262 * 21 20 19 43 43 H 1.09003 * 109.46652 * 60.00899 * 22 21 20 44 44 H 1.09005 * 109.46663 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.47494 * 299.99901 * 25 23 22 46 46 H 1.09005 * 109.47122 * 60.00375 * 25 23 22 47 47 H 1.09003 * 109.46653 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5979 2.0925 -1.2165 5 6 2.3001 1.5002 -2.4110 6 1 3.0506 0.7361 -2.2723 7 6 1.9845 1.9338 -3.6812 8 7 1.0702 2.8640 -3.8503 9 14 2.8544 1.1992 -5.1621 10 1 2.6020 -0.2634 -5.2092 11 1 2.3380 1.8305 -6.4030 12 1 4.3146 1.4462 -5.0512 13 6 1.5774 2.0997 1.2048 14 6 2.2291 1.4891 2.4187 15 8 2.9875 0.5512 2.2925 16 7 1.9697 1.9859 3.6444 17 6 2.6036 1.3927 4.8244 18 1 3.6091 1.0592 4.5677 19 6 1.7761 0.1973 5.3011 20 6 0.3647 0.6652 5.6614 21 6 0.4427 1.7090 6.7773 22 6 1.2704 2.9044 6.3006 23 6 2.6817 2.4364 5.9404 24 1 3.1533 1.9950 6.8183 25 6 3.5090 3.6317 5.4631 26 1 -0.3633 -1.0276 -0.0163 27 1 -0.3633 0.4995 0.8981 28 1 -0.3634 0.5278 -0.8817 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5199 1.9900 -1.3410 32 1 1.8550 3.1482 -1.1303 33 1 0.8484 3.1694 -4.7438 34 1 0.4940 2.0220 1.2962 35 1 1.8613 3.1494 1.1293 36 1 1.3667 2.7391 3.7448 37 1 1.7204 -0.5463 4.5060 38 1 2.2479 -0.2444 6.1788 39 1 -0.1069 1.1067 4.7834 40 1 -0.2251 -0.1864 6.0006 41 1 -0.5628 2.0421 7.0343 42 1 0.9144 1.2676 7.6553 43 1 0.7987 3.3458 5.4227 44 1 1.3255 3.6482 7.0956 45 1 3.0373 4.0727 4.5850 46 1 3.5647 4.3756 6.2579 47 1 4.5147 3.2983 5.2068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330977398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:52 Heat of formation + Delta-G solvation = -52.787515 kcal Electronic energy + Delta-G solvation = -23535.625318 eV Core-core repulsion = 20331.502165 eV Total energy + Delta-G solvation = -3204.123154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29599 -38.40917 -36.34173 -33.57075 -32.67255 -32.53186 -30.44749 -29.43626 -27.98977 -26.41354 -24.99965 -23.07958 -22.71523 -21.61325 -20.93499 -19.30303 -19.04120 -16.85471 -16.08760 -15.80398 -15.59030 -15.30018 -14.84629 -14.57089 -14.25753 -14.13380 -13.79342 -13.49151 -13.37346 -12.93541 -12.70734 -12.35682 -12.22810 -12.10389 -11.88719 -11.73697 -11.66926 -11.40624 -11.11557 -11.09903 -10.84416 -10.74996 -10.72576 -10.51653 -10.47754 -10.16303 -9.96188 -9.88899 -9.32410 -8.98392 -8.80017 -8.38507 -7.10183 -5.98716 -3.98741 3.09153 3.37704 3.38003 3.40967 3.46107 4.42031 4.47514 4.50604 4.55684 4.88229 4.99128 5.09982 5.15801 5.20213 5.26911 5.34643 5.37120 5.40821 5.44539 5.59409 5.65956 5.74093 5.76639 5.81455 5.83315 5.89114 5.97460 5.98825 6.07734 6.09884 6.12081 6.18530 6.21850 6.24178 6.54336 6.72334 6.75681 7.07382 7.31847 7.46227 7.72060 7.88720 8.13471 8.25557 8.57834 8.68959 9.09874 9.65095 11.12032 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030336 B = 0.003609 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.785907 B = 7757.456039 C = 7996.484841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.516 5.516 4 C 0.189 3.811 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.902 5.902 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.032 3.968 14 C 0.516 3.484 15 O -0.519 6.519 16 N -0.732 5.732 17 C 0.153 3.847 18 H 0.086 0.914 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.098 4.098 24 H 0.080 0.920 25 C -0.148 4.148 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.004 0.996 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.394 0.606 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 0.176 22.261 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.240 5.240 4 C 0.064 3.936 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.100 4.100 14 C 0.303 3.697 15 O -0.394 6.394 16 N -0.387 5.387 17 C 0.048 3.952 18 H 0.104 0.896 19 C -0.169 4.169 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.117 4.117 24 H 0.099 0.901 25 C -0.205 4.205 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.022 0.978 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.123 -0.423 21.993 22.026 hybrid contribution -0.872 0.155 -0.827 1.212 sum -1.995 -0.267 21.166 21.261 Atomic orbital electron populations 1.22418 1.00010 1.00975 1.01385 1.22110 0.91249 0.91114 1.02724 1.62087 1.59088 1.01946 1.00881 1.19825 0.94865 0.93616 0.85308 1.21114 1.21226 1.21716 0.89998 0.91839 1.24967 0.95344 0.95302 0.98986 1.69944 1.32070 1.29678 1.22462 0.86563 0.79989 0.79273 0.81616 1.20279 1.21452 1.20173 1.21977 0.97727 0.99460 0.90842 1.20961 0.81407 0.83380 0.83998 1.90630 1.35270 1.27655 1.85814 1.46163 1.49804 1.36758 1.05951 1.20843 0.97339 0.92406 0.84628 0.89601 1.21915 0.95770 0.98004 1.01213 1.21491 0.97028 0.98471 0.98582 1.21547 0.99762 0.96034 0.98329 1.21603 0.94973 0.97697 1.01038 1.21408 0.96234 0.96093 0.97946 0.90121 1.21822 1.00058 0.97390 1.01240 0.93414 0.94238 0.91406 0.90260 0.91041 0.97819 0.95810 0.92971 0.92798 0.88910 0.77061 0.91283 0.91505 0.91822 0.92271 0.92124 0.92074 0.91981 0.91781 0.92277 0.92724 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.06 1.19 5.55 -3.82 -0.02 1.17 16 3 N -0.52 -11.56 4.43 -237.52 -1.05 -12.61 16 4 C 0.19 4.89 4.54 -4.98 -0.02 4.87 16 5 C -0.50 -14.31 8.40 -34.44 -0.29 -14.60 16 6 H 0.06 1.84 7.42 -52.49 -0.39 1.45 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.03 0.56 5.23 -4.98 -0.03 0.54 16 14 C 0.52 8.49 7.51 -10.99 -0.08 8.40 16 15 O -0.52 -10.49 13.97 5.56 0.08 -10.41 16 16 N -0.73 -8.71 3.54 -53.81 -0.19 -8.90 16 17 C 0.15 1.65 2.23 -67.93 -0.15 1.49 16 18 H 0.09 1.12 7.57 -51.93 -0.39 0.73 16 19 C -0.13 -1.34 5.61 -26.73 -0.15 -1.49 16 20 C -0.12 -1.05 5.77 -26.73 -0.15 -1.20 16 21 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 22 C -0.12 -0.82 5.03 -26.73 -0.13 -0.96 16 23 C -0.10 -0.79 2.52 -90.62 -0.23 -1.02 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 C -0.15 -1.24 9.03 37.16 0.34 -0.90 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.67 6.35 -51.93 -0.33 0.34 16 28 H 0.07 1.44 6.26 -51.93 -0.32 1.11 16 29 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 30 H 0.07 1.49 5.86 -51.93 -0.30 1.19 16 31 H 0.00 0.11 5.99 -51.93 -0.31 -0.20 16 32 H 0.02 0.65 7.90 -51.93 -0.41 0.24 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.05 0.89 6.06 -51.93 -0.31 0.57 16 35 H 0.09 1.55 7.91 -51.93 -0.41 1.14 16 36 H 0.39 3.86 6.65 -40.82 -0.27 3.59 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.53 7.44 -51.93 -0.39 0.14 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -31.58 354.40 -9.25 -40.83 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.31 Total: 1.21 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.84 Total: -6.46 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.51 Total: -47.51 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.58 -9.25 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330977398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.962 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds