Wall clock time and date at job start Tue Mar 31 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47236 * 2 1 4 4 C 1.46901 * 110.99960 * 200.01324 * 3 2 1 5 5 C 1.50701 * 109.46703 * 66.05070 * 4 3 2 6 6 H 1.08000 * 120.00516 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99737 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99886 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47302 * 89.99572 * 9 7 5 11 11 H 1.48496 * 109.47106 * 209.99906 * 9 7 5 12 12 H 1.48501 * 109.46995 * 329.99881 * 9 7 5 13 13 C 1.46893 * 110.99722 * 76.06380 * 3 2 1 14 14 C 1.50698 * 109.47228 * 200.15210 * 13 3 2 15 15 O 1.21282 * 120.00137 * 356.02085 * 14 13 3 16 16 N 1.34777 * 120.00452 * 176.29612 * 14 13 3 17 17 C 1.46500 * 120.00486 * 179.72452 * 16 14 13 18 18 H 1.09004 * 109.46421 * 325.00062 * 17 16 14 19 19 C 1.53001 * 109.47187 * 84.99819 * 17 16 14 20 20 C 1.52998 * 109.47037 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47167 * 300.00325 * 20 19 17 22 22 C 1.53001 * 109.47407 * 59.99902 * 21 20 19 23 23 C 1.52995 * 109.47191 * 205.00250 * 17 16 14 24 24 H 1.08998 * 109.47230 * 299.99991 * 23 17 16 25 25 C 1.52999 * 109.47216 * 60.00036 * 23 17 16 26 26 H 1.09008 * 109.47148 * 54.73503 * 1 2 3 27 27 H 1.09004 * 109.47235 * 174.73375 * 1 2 3 28 28 H 1.09002 * 109.47199 * 294.73747 * 1 2 3 29 29 H 1.09004 * 109.46706 * 240.00531 * 2 1 3 30 30 H 1.08990 * 109.46989 * 120.00434 * 2 1 3 31 31 H 1.08993 * 109.46824 * 186.04558 * 4 3 2 32 32 H 1.08993 * 109.47345 * 306.05035 * 4 3 2 33 33 H 0.97004 * 119.99527 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47502 * 80.14763 * 13 3 2 35 35 H 1.09005 * 109.47382 * 320.14662 * 13 3 2 36 36 H 0.97000 * 119.99725 * 359.72413 * 16 14 13 37 37 H 1.08997 * 109.47022 * 300.00426 * 19 17 16 38 38 H 1.09006 * 109.46419 * 60.00355 * 19 17 16 39 39 H 1.08998 * 109.47200 * 60.00533 * 20 19 17 40 40 H 1.09002 * 109.46921 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47179 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.47230 * 300.00189 * 21 20 19 43 43 H 1.09003 * 109.47125 * 60.00093 * 22 21 20 44 44 H 1.09001 * 109.47473 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47492 * 59.99985 * 25 23 17 46 46 H 1.09007 * 109.47292 * 180.02562 * 25 23 17 47 47 H 1.09003 * 109.47131 * 299.99642 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4101 1.4517 -0.4694 5 6 3.4701 1.0503 -1.9207 6 1 2.5658 0.7737 -2.4423 7 6 4.6795 1.0362 -2.5826 8 7 5.7807 1.3735 -1.9475 9 14 4.7541 0.5379 -4.3814 10 1 4.5827 1.7404 -5.2356 11 1 6.0695 -0.0890 -4.6672 12 1 3.6692 -0.4338 -4.6712 13 6 1.8838 1.9913 1.3310 14 6 1.9130 3.4927 1.2045 15 8 2.1073 4.0065 0.1232 16 7 1.7288 4.2646 2.2938 17 6 1.7632 5.7241 2.1718 18 1 2.4966 6.0083 1.4172 19 6 0.3814 6.2340 1.7577 20 6 0.4176 7.7582 1.6297 21 6 0.8062 8.3740 2.9752 22 6 2.1880 7.8640 3.3894 23 6 2.1516 6.3394 3.5177 24 1 1.4183 6.0551 4.2723 25 6 3.5334 5.8295 3.9318 26 1 -0.3634 0.5934 -0.8391 27 1 -0.3634 -1.0234 -0.0943 28 1 -0.3634 0.4300 0.9334 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7825 2.4701 -0.3584 32 1 4.0259 0.7733 0.1210 33 1 6.6315 1.3639 -2.4133 34 1 2.7076 1.6640 1.9653 35 1 0.9378 1.6827 1.7761 36 1 1.5734 3.8538 3.1587 37 1 0.1048 5.7957 0.7988 38 1 -0.3519 5.9497 2.5124 39 1 1.1508 8.0422 0.8748 40 1 -0.5670 8.1215 1.3350 41 1 0.8316 9.4598 2.8842 42 1 0.0730 8.0900 3.7301 43 1 2.9214 8.1480 2.6346 44 1 2.4651 8.3030 4.3479 45 1 4.2668 6.1138 3.1772 46 1 3.8100 6.2675 4.8909 47 1 3.5078 4.7436 4.0226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330977399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:54 Heat of formation + Delta-G solvation = -58.499406 kcal Electronic energy + Delta-G solvation = -23304.049168 eV Core-core repulsion = 20099.678328 eV Total energy + Delta-G solvation = -3204.370840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89697 -38.20614 -36.22884 -33.88407 -32.54195 -32.48088 -30.38746 -29.65069 -27.85844 -26.29829 -24.96230 -22.60723 -22.31700 -21.35862 -20.40083 -20.13834 -19.31218 -16.71780 -16.35254 -16.09784 -15.11440 -14.75090 -14.61497 -14.31211 -14.23042 -14.04469 -13.85506 -13.35737 -13.22719 -13.06236 -12.58148 -12.46039 -12.15190 -11.99507 -11.89359 -11.73589 -11.48170 -11.23936 -11.11067 -10.98756 -10.94032 -10.65275 -10.61408 -10.52066 -10.42371 -10.21326 -10.08956 -9.74387 -9.24164 -8.93537 -8.64522 -8.30511 -7.17526 -5.90776 -3.89837 3.29513 3.40350 3.45260 3.46013 3.49442 4.52122 4.52578 4.60496 4.74812 4.97909 5.02307 5.11470 5.29268 5.33990 5.35744 5.39338 5.45302 5.49323 5.60952 5.62726 5.65110 5.79171 5.79667 5.85453 5.90514 5.93762 6.01276 6.03654 6.07098 6.09726 6.12560 6.20728 6.30816 6.33283 6.40710 6.73444 6.82123 6.85348 7.39733 7.41058 7.85160 7.95611 8.24676 8.30388 8.63840 8.89014 9.16346 9.72404 11.20749 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018347 B = 0.004108 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.731388 B = 6814.536568 C = 7369.476287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.519 5.519 4 C 0.194 3.806 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.274 1.274 13 C 0.037 3.963 14 C 0.511 3.489 15 O -0.499 6.499 16 N -0.740 5.740 17 C 0.153 3.847 18 H 0.086 0.914 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.096 4.096 24 H 0.071 0.929 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.018 0.982 31 H 0.042 0.958 32 H -0.015 1.015 33 H 0.259 0.741 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.392 0.608 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 9.230 14.970 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.244 5.244 4 C 0.070 3.930 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.199 1.199 13 C -0.095 4.095 14 C 0.296 3.704 15 O -0.370 6.370 16 N -0.394 5.394 17 C 0.049 3.951 18 H 0.104 0.896 19 C -0.167 4.167 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.115 4.115 24 H 0.090 0.910 25 C -0.205 4.205 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.003 0.997 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.062 9.866 13.762 19.697 hybrid contribution 0.595 -0.875 0.098 1.063 sum -9.467 8.991 13.859 19.040 Atomic orbital electron populations 1.21807 0.96650 1.00343 1.01329 1.22011 0.94208 0.89911 1.01134 1.61868 1.26616 1.16453 1.19431 1.19799 0.80624 0.97370 0.95256 1.21120 0.93169 1.43982 0.95384 0.91958 1.24960 0.95654 0.95813 0.98227 1.69969 0.98361 1.49270 1.36480 0.86521 0.77038 0.78643 0.85325 1.20685 1.21454 1.19914 1.21901 1.01474 0.91857 0.94318 1.20825 0.76072 0.89563 0.83898 1.90750 1.45003 1.74762 1.26483 1.46113 1.76171 1.06141 1.10972 1.20874 0.97332 0.79804 0.97139 0.89582 1.21921 0.97193 0.95429 1.02200 1.21500 1.01549 0.95163 0.97363 1.21559 0.96953 0.99794 0.97430 1.21570 0.97517 0.94305 1.01580 1.21388 0.97878 0.95593 0.96662 0.91013 1.21828 0.96304 1.01351 1.01031 0.92025 0.93318 0.94085 0.89234 0.96370 0.94030 0.99723 0.93136 0.92965 0.89677 0.77480 0.91158 0.92207 0.91671 0.91987 0.92075 0.92121 0.91588 0.91775 0.92379 0.92807 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.96 37.16 0.37 -1.90 16 2 C 0.06 1.08 5.51 -3.82 -0.02 1.06 16 3 N -0.52 -11.64 4.01 -237.53 -0.95 -12.59 16 4 C 0.19 5.34 4.33 -4.98 -0.02 5.31 16 5 C -0.50 -14.71 8.23 -34.44 -0.28 -15.00 16 6 H 0.06 1.83 7.32 -52.49 -0.38 1.44 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 9 Si 0.90 22.62 29.54 -169.99 -5.02 17.60 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 14 C 0.51 9.48 7.53 -10.99 -0.08 9.40 16 15 O -0.50 -11.91 14.74 5.56 0.08 -11.83 16 16 N -0.74 -9.98 4.38 -53.81 -0.24 -10.21 16 17 C 0.15 1.95 1.90 -67.93 -0.13 1.82 16 18 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 19 C -0.13 -1.54 5.49 -26.73 -0.15 -1.68 16 20 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 22 C -0.11 -0.98 5.21 -26.71 -0.14 -1.12 16 23 C -0.10 -0.93 2.30 -90.60 -0.21 -1.14 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 C -0.15 -1.48 9.04 37.16 0.34 -1.14 16 26 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.57 6.91 -51.93 -0.36 0.22 16 29 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 30 H 0.02 0.33 7.99 -51.93 -0.42 -0.09 16 31 H 0.04 1.27 6.63 -51.93 -0.34 0.93 16 32 H -0.01 -0.43 8.12 -51.93 -0.42 -0.85 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.05 0.90 7.99 -51.93 -0.42 0.49 16 35 H 0.09 1.24 6.58 -51.93 -0.34 0.90 16 36 H 0.39 4.04 8.39 -40.82 -0.34 3.70 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -34.05 365.05 -9.43 -43.48 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.78 Total: 0.00 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.77 Total: -4.76 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.45 Total: -50.00 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.05 -9.43 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330977399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.020 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds