Wall clock time and date at job start Tue Mar 31 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47281 * 2 1 4 4 C 1.36938 * 120.00074 * 274.54591 * 3 2 1 5 5 H 1.08003 * 119.99860 * 179.97438 * 4 3 2 6 6 C 1.38808 * 120.00332 * 359.94553 * 4 3 2 7 7 N 1.31622 * 119.99878 * 23.52531 * 6 4 3 8 8 Si 1.86802 * 120.00492 * 203.52763 * 6 4 3 9 9 H 1.48501 * 109.46880 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47242 * 119.99994 * 8 6 4 11 11 H 1.48501 * 109.47066 * 240.00223 * 8 6 4 12 12 C 1.46501 * 120.00020 * 94.54272 * 3 2 1 13 13 H 1.09001 * 109.47228 * 185.74009 * 12 3 2 14 14 C 1.52995 * 109.47116 * 305.74379 * 12 3 2 15 15 C 1.50706 * 109.46770 * 65.74083 * 12 3 2 16 16 O 1.21275 * 120.00358 * 341.38714 * 15 12 3 17 17 N 1.34774 * 119.99716 * 161.38666 * 15 12 3 18 18 C 1.46501 * 120.00114 * 179.97438 * 17 15 12 19 19 C 1.52995 * 109.47376 * 275.00429 * 18 17 15 20 20 C 1.52994 * 109.47402 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47214 * 59.99951 * 20 19 18 22 22 C 1.53003 * 109.47525 * 180.02562 * 21 20 19 23 23 C 1.53008 * 109.47000 * 300.00120 * 21 20 19 24 24 C 1.52993 * 109.47061 * 155.00265 * 18 17 15 25 25 H 1.08997 * 109.46586 * 293.85281 * 1 2 3 26 26 H 1.08998 * 109.46992 * 53.84724 * 1 2 3 27 27 H 1.08996 * 109.47481 * 173.85337 * 1 2 3 28 28 H 1.08999 * 109.47102 * 120.00448 * 2 1 3 29 29 H 1.09005 * 109.46670 * 240.00502 * 2 1 3 30 30 H 0.96995 * 120.00156 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47375 * 59.99719 * 14 12 3 32 32 H 1.08999 * 109.47551 * 179.97438 * 14 12 3 33 33 H 1.09005 * 109.47029 * 299.99692 * 14 12 3 34 34 H 0.97000 * 120.00289 * 0.02562 * 17 15 12 35 35 H 1.09002 * 109.46428 * 35.00496 * 18 17 15 36 36 H 1.09003 * 109.47231 * 300.00000 * 19 18 17 37 37 H 1.08999 * 109.47334 * 59.99364 * 19 18 17 38 38 H 1.09004 * 109.47156 * 299.99728 * 20 19 18 39 39 H 1.08997 * 109.47360 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47277 * 59.99724 * 21 20 19 41 41 H 1.09002 * 109.47409 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.46789 * 300.00094 * 22 21 20 43 43 H 1.09003 * 109.46878 * 59.99332 * 22 21 20 44 44 H 1.09004 * 109.46886 * 299.99926 * 23 21 20 45 45 H 1.09002 * 109.47022 * 179.97438 * 23 21 20 46 46 H 1.09005 * 109.47347 * 300.00330 * 24 18 17 47 47 H 1.08994 * 109.47740 * 60.00310 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1580 2.0580 -1.1822 5 1 2.5177 3.0764 -1.1821 6 6 1.8379 1.4352 -2.3806 7 7 0.9962 0.4233 -2.3922 8 14 2.6018 2.0328 -3.9772 9 1 3.5081 3.1749 -3.6952 10 1 3.3762 0.9288 -4.5991 11 1 1.5287 2.4694 -4.9063 12 6 2.3573 2.0383 1.2647 13 1 2.6018 3.0838 1.0769 14 6 1.1632 1.9570 2.2177 15 6 3.5443 1.3487 1.8867 16 8 3.8485 0.2290 1.5341 17 7 4.2677 1.9765 2.8349 18 6 5.4212 1.3060 3.4400 19 6 4.9485 0.4204 4.5946 20 6 6.1531 -0.2803 5.2261 21 6 7.1331 0.7684 5.7559 22 6 8.3381 0.0678 6.3869 23 6 7.6058 1.6541 4.6012 24 6 6.4007 2.3551 3.9698 25 1 -0.3632 0.4156 0.9399 26 1 -0.3633 0.6063 -0.8298 27 1 -0.3634 -1.0217 -0.1100 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 0.7722 -0.0117 -3.2296 31 1 0.9187 0.9115 2.4056 32 1 1.4154 2.4454 3.1589 33 1 0.3047 2.4557 1.7678 34 1 4.0241 2.8720 3.1172 35 1 5.9183 0.6907 2.6900 36 1 4.4514 1.0357 5.3445 37 1 4.2506 -0.3269 4.2171 38 1 6.6499 -0.8957 4.4760 39 1 5.8164 -0.9108 6.0489 40 1 6.6364 1.3838 6.5059 41 1 9.0361 0.8149 6.7647 42 1 8.0016 -0.5635 7.2094 43 1 8.8347 -0.5474 5.6364 44 1 8.1026 1.0386 3.8511 45 1 8.3037 2.4015 4.9787 46 1 6.7374 2.9861 3.1472 47 1 5.9036 2.9704 4.7197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331328531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:44 Heat of formation + Delta-G solvation = -31.902531 kcal Electronic energy + Delta-G solvation = -23631.695931 eV Core-core repulsion = 20428.478418 eV Total energy + Delta-G solvation = -3203.217513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.72269 -38.24924 -35.82385 -34.21533 -32.27206 -30.93215 -30.84074 -29.59382 -28.43824 -26.02069 -24.13879 -22.84012 -22.71701 -21.32686 -20.50509 -20.04772 -19.03779 -16.86468 -16.33099 -15.82342 -15.01075 -14.82132 -14.42343 -14.33483 -14.24979 -13.74287 -13.35154 -13.30510 -12.90533 -12.72232 -12.32341 -12.27838 -12.06458 -11.84593 -11.77239 -11.57768 -11.29150 -11.21078 -10.98391 -10.87603 -10.79489 -10.68578 -10.61435 -10.40383 -10.24676 -10.16284 -9.84987 -9.53966 -9.43185 -8.76788 -8.55125 -8.18575 -6.82654 -5.66964 -2.98431 3.41804 3.47384 3.52449 3.53171 3.66768 4.54680 4.57189 4.57897 4.75754 4.98568 5.11499 5.30231 5.34255 5.41169 5.42373 5.44568 5.46871 5.50281 5.61131 5.67047 5.74007 5.80953 5.92198 5.93387 6.01749 6.03175 6.04413 6.14289 6.19017 6.26790 6.34510 6.42081 6.55992 6.78829 6.89776 6.99232 7.17636 7.28871 7.42665 7.72557 8.01069 8.11542 8.32449 8.45970 9.01777 9.32654 9.93509 10.37147 11.32653 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.004033 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.994485 B = 6941.023728 C = 7414.321063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.174 3.826 3 N -0.574 5.574 4 C -0.254 4.254 5 H 0.074 0.926 6 C 0.002 3.998 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.161 3.839 13 H 0.080 0.920 14 C -0.152 4.152 15 C 0.493 3.507 16 O -0.528 6.528 17 N -0.741 5.741 18 C 0.145 3.855 19 C -0.127 4.127 20 C -0.111 4.111 21 C -0.093 4.093 22 C -0.147 4.147 23 C -0.110 4.110 24 C -0.125 4.125 25 H 0.006 0.994 26 H 0.088 0.912 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.250 0.750 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.392 0.608 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 3.313 17.155 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.050 3.950 3 N -0.293 5.293 4 C -0.382 4.382 5 H 0.092 0.908 6 C -0.195 4.195 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.221 1.221 12 C 0.047 3.953 13 H 0.098 0.902 14 C -0.211 4.211 15 C 0.278 3.722 16 O -0.402 6.402 17 N -0.394 5.394 18 C 0.040 3.960 19 C -0.166 4.166 20 C -0.149 4.149 21 C -0.112 4.112 22 C -0.205 4.205 23 C -0.148 4.148 24 C -0.163 4.163 25 H 0.025 0.975 26 H 0.107 0.893 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.621 2.365 16.666 19.389 hybrid contribution 0.290 0.687 -0.712 1.031 sum 9.911 3.052 15.955 19.029 Atomic orbital electron populations 1.22437 0.99457 0.98872 0.99483 1.20832 0.91630 0.83613 0.98957 1.43977 1.73916 1.11687 0.99759 1.19316 1.38299 0.96967 0.83657 0.90784 1.24714 0.98951 0.98380 0.97466 1.70321 1.32463 1.25863 1.24841 0.86350 0.79271 0.77814 0.84199 1.20622 1.21663 1.22067 1.20184 0.90713 0.96141 0.88264 0.90192 1.22255 0.99109 1.02146 0.97614 1.22913 0.84825 0.87039 0.77438 1.90604 1.69390 1.19493 1.60678 1.46459 1.31203 1.19807 1.41977 1.20830 0.86752 0.93778 0.94658 1.21904 0.97869 0.99342 0.97487 1.21557 0.95827 0.97497 1.00067 1.21174 0.96015 0.96804 0.97197 1.21835 0.97778 1.00336 1.00534 1.21552 0.97074 0.98640 0.97557 1.21804 0.96204 0.97881 1.00434 0.97495 0.89309 0.96408 0.96250 0.90071 0.93970 0.92444 0.93795 0.91617 0.77465 0.89970 0.92196 0.91396 0.91792 0.92048 0.91311 0.92879 0.92821 0.92664 0.91707 0.91841 0.91407 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.16 37.16 0.34 -3.18 16 2 C 0.17 4.55 4.35 -4.04 -0.02 4.53 16 3 N -0.57 -14.59 2.30 -166.98 -0.38 -14.98 16 4 C -0.25 -6.98 9.72 -15.06 -0.15 -7.12 16 5 H 0.07 1.96 7.76 -52.48 -0.41 1.55 16 6 C 0.00 0.06 5.08 -17.43 -0.09 -0.03 16 7 N -0.89 -25.47 7.90 55.49 0.44 -25.03 16 8 Si 0.89 22.04 29.61 -169.99 -5.03 17.00 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 C 0.16 3.27 3.10 -69.08 -0.21 3.06 16 13 H 0.08 1.51 7.78 -51.93 -0.40 1.11 16 14 C -0.15 -2.66 8.05 37.16 0.30 -2.36 16 15 C 0.49 9.70 6.97 -10.98 -0.08 9.62 16 16 O -0.53 -12.63 14.10 5.56 0.08 -12.56 16 17 N -0.74 -10.84 5.08 -53.81 -0.27 -11.11 16 18 C 0.15 1.92 2.45 -67.94 -0.17 1.75 16 19 C -0.13 -1.57 5.49 -26.74 -0.15 -1.71 16 20 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 21 C -0.09 -0.81 2.72 -90.61 -0.25 -1.06 16 22 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 23 C -0.11 -0.99 5.20 -26.70 -0.14 -1.12 16 24 C -0.13 -1.25 5.39 -26.71 -0.14 -1.40 16 25 H 0.01 0.14 6.10 -51.93 -0.32 -0.18 16 26 H 0.09 2.43 6.25 -51.93 -0.32 2.10 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.50 6.18 -51.93 -0.32 0.18 16 29 H 0.08 2.41 5.95 -51.93 -0.31 2.10 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.06 1.09 6.49 -51.93 -0.34 0.75 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.18 8.06 -51.93 -0.42 0.77 16 34 H 0.39 4.59 8.60 -40.82 -0.35 4.24 16 35 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -31.13 355.45 -9.00 -40.12 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.64 Total: 2.27 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.54 Total: -1.08 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.22 Total: -51.12 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.13 -9.00 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331328531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.221 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds