Wall clock time and date at job start Tue Mar 31 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47164 * 2 1 4 4 C 1.36939 * 119.99966 * 83.79165 * 3 2 1 5 5 H 1.07996 * 119.99616 * 35.26917 * 4 3 2 6 6 C 1.38809 * 119.99759 * 214.98693 * 4 3 2 7 7 N 1.31614 * 119.99915 * 18.71856 * 6 4 3 8 8 Si 1.86798 * 119.99702 * 198.71048 * 6 4 3 9 9 H 1.48501 * 109.47381 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46998 * 120.00447 * 8 6 4 11 11 H 1.48504 * 109.47180 * 240.00588 * 8 6 4 12 12 C 1.46493 * 119.99957 * 263.79077 * 3 2 1 13 13 H 1.09001 * 109.47290 * 175.56588 * 12 3 2 14 14 C 1.52997 * 109.47305 * 55.56781 * 12 3 2 15 15 C 1.50700 * 109.47513 * 295.56695 * 12 3 2 16 16 O 1.21277 * 119.99685 * 0.02562 * 15 12 3 17 17 N 1.34778 * 120.00412 * 180.02562 * 15 12 3 18 18 C 1.46495 * 119.99854 * 180.02562 * 17 15 12 19 19 C 1.53005 * 109.47062 * 274.99540 * 18 17 15 20 20 C 1.52992 * 109.46987 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47408 * 60.00287 * 20 19 18 22 22 C 1.53002 * 109.47147 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47066 * 299.99598 * 21 20 19 24 24 C 1.53002 * 109.46744 * 59.99833 * 23 21 20 25 25 H 1.08995 * 109.47127 * 59.99529 * 1 2 3 26 26 H 1.08996 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46906 * 300.00057 * 1 2 3 28 28 H 1.08997 * 109.46661 * 240.00391 * 2 1 3 29 29 H 1.09003 * 109.47262 * 120.00181 * 2 1 3 30 30 H 0.97005 * 119.99986 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47615 * 300.00367 * 14 12 3 32 32 H 1.09008 * 109.47132 * 60.00010 * 14 12 3 33 33 H 1.09008 * 109.47567 * 179.97438 * 14 12 3 34 34 H 0.96998 * 119.99782 * 0.02562 * 17 15 12 35 35 H 1.09000 * 109.47820 * 35.00174 * 18 17 15 36 36 H 1.09000 * 109.46864 * 300.00663 * 19 18 17 37 37 H 1.08998 * 109.46578 * 60.00244 * 19 18 17 38 38 H 1.09000 * 109.47518 * 299.99844 * 20 19 18 39 39 H 1.09006 * 109.47178 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.46953 * 60.00090 * 21 20 19 41 41 H 1.08993 * 109.46910 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47130 * 300.00431 * 22 21 20 43 43 H 1.09000 * 109.46868 * 59.99792 * 22 21 20 44 44 H 1.09000 * 109.47180 * 300.00350 * 23 21 20 45 45 H 1.08993 * 109.47187 * 179.97438 * 23 21 20 46 46 H 1.09001 * 109.46810 * 179.97438 * 24 23 21 47 47 H 1.09000 * 109.46860 * 60.00321 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1257 2.0695 1.1790 5 1 2.4148 1.5522 2.0818 6 6 1.8686 3.4332 1.2124 7 7 1.1814 3.9972 0.2419 8 14 2.4976 4.4676 2.6349 9 1 3.2366 3.6013 3.5882 10 1 3.4071 5.5209 2.1167 11 1 1.3497 5.1031 3.3305 12 6 2.3919 2.0261 -1.2612 13 1 2.6536 3.0674 -1.0734 14 6 1.2130 1.9642 -2.2344 15 6 3.5755 1.3108 -1.8600 16 8 4.0591 0.3561 -1.2895 17 7 4.0967 1.7321 -3.0293 18 6 5.2470 1.0363 -3.6115 19 6 6.5381 1.5898 -3.0052 20 6 7.7394 0.8636 -3.6137 21 6 7.7532 1.0808 -5.1282 22 6 8.9550 0.3551 -5.7365 23 6 6.4621 0.5273 -5.7345 24 6 5.2608 1.2535 -5.1260 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.0014 4.9501 0.2654 31 1 0.9511 0.9230 -2.4223 32 1 0.3568 2.4816 -1.8014 33 1 1.4907 2.4444 -3.1728 34 1 3.7101 2.4959 -3.4854 35 1 5.1731 -0.0300 -3.3978 36 1 6.6120 2.6560 -3.2190 37 1 6.5281 1.4354 -1.9263 38 1 7.6658 -0.2027 -3.4002 39 1 8.6593 1.2576 -3.1814 40 1 7.8270 2.1472 -5.3416 41 1 8.9645 0.5095 -6.8154 42 1 9.8746 0.7497 -5.3044 43 1 8.8816 -0.7113 -5.5230 44 1 6.3884 -0.5390 -5.5210 45 1 6.4717 0.6825 -6.8133 46 1 4.3410 0.8595 -5.5583 47 1 5.3345 2.3199 -5.3395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331328533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:47 Heat of formation + Delta-G solvation = -48.327751 kcal Electronic energy + Delta-G solvation = -23745.217380 eV Core-core repulsion = 20541.287616 eV Total energy + Delta-G solvation = -3203.929764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.60883 -38.13727 -35.70639 -34.11644 -31.78905 -31.44863 -30.79030 -29.93775 -28.21208 -25.87777 -24.11890 -22.90272 -22.68491 -21.30391 -20.44406 -19.96395 -18.99729 -17.04963 -16.10358 -15.73907 -14.99158 -14.46741 -14.33778 -14.24817 -14.14731 -13.74165 -13.65060 -13.15542 -12.96494 -12.62132 -12.32854 -12.21383 -12.20632 -11.83473 -11.62507 -11.46953 -11.31192 -11.13336 -11.08701 -10.92296 -10.88425 -10.73009 -10.68794 -10.35850 -10.25705 -10.08647 -10.06557 -9.72493 -9.60286 -8.68392 -8.50135 -8.40212 -6.56915 -5.84038 -3.29800 3.35546 3.44935 3.49672 3.64073 3.81816 4.50638 4.62562 4.64198 4.82212 5.04837 5.18718 5.33326 5.36645 5.45779 5.48577 5.49547 5.51586 5.54903 5.70586 5.72849 5.83955 5.92766 5.98063 6.08777 6.11498 6.21356 6.25746 6.27483 6.31331 6.43754 6.45314 6.51456 6.55831 6.63940 6.70234 6.84698 7.11417 7.13334 7.25042 7.37149 7.45021 7.85088 8.21925 8.52099 9.07989 9.26513 9.82796 10.40718 11.22960 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.004482 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.553348 B = 6245.577988 C = 6845.322124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 N -0.561 5.561 4 C -0.249 4.249 5 H 0.063 0.937 6 C 0.009 3.991 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.289 1.289 12 C 0.173 3.827 13 H 0.117 0.883 14 C -0.140 4.140 15 C 0.490 3.510 16 O -0.542 6.542 17 N -0.741 5.741 18 C 0.146 3.854 19 C -0.129 4.129 20 C -0.110 4.110 21 C -0.094 4.094 22 C -0.147 4.147 23 C -0.109 4.109 24 C -0.126 4.126 25 H 0.047 0.953 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.253 0.747 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.394 0.606 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 -3.643 -13.460 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 N -0.280 5.280 4 C -0.379 4.379 5 H 0.080 0.920 6 C -0.190 4.190 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.216 1.216 12 C 0.061 3.939 13 H 0.134 0.866 14 C -0.199 4.199 15 C 0.276 3.724 16 O -0.417 6.417 17 N -0.395 5.395 18 C 0.041 3.959 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.112 4.112 22 C -0.204 4.204 23 C -0.147 4.147 24 C -0.164 4.164 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.227 0.773 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.087 -4.205 -12.988 16.400 hybrid contribution 0.165 1.099 0.459 1.202 sum 9.252 -3.106 -12.530 15.882 Atomic orbital electron populations 1.22394 0.99818 0.98267 1.02039 1.20715 0.91170 0.86772 0.98700 1.43452 1.72138 1.10118 1.02300 1.19163 1.39678 0.91108 0.87975 0.91958 1.25123 0.97752 0.98480 0.97684 1.70009 1.38963 1.10795 1.34001 0.86307 0.78409 0.80307 0.82296 1.20138 1.21557 1.21634 1.20253 0.88634 0.98548 0.86475 0.86597 1.22094 1.00807 0.99863 0.97106 1.23223 0.85790 0.84302 0.79061 1.90555 1.62514 1.28296 1.60352 1.46478 1.33217 1.35020 1.24751 1.20800 0.85784 0.97841 0.91494 1.21926 0.94115 0.99728 1.01059 1.21549 0.97980 1.00891 0.94418 1.21177 0.94605 1.00061 0.95402 1.21829 0.97727 1.00556 1.00318 1.21529 0.93732 1.00095 0.99356 1.21802 0.98606 1.01058 0.94896 0.93344 0.95286 0.92796 0.94184 0.94540 0.93665 0.94538 0.90065 0.94664 0.77265 0.90188 0.92144 0.91271 0.91907 0.92093 0.91285 0.92906 0.92822 0.92726 0.91806 0.91892 0.91486 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 10.00 37.16 0.37 -3.09 16 2 C 0.15 3.52 5.01 -4.04 -0.02 3.50 16 3 N -0.56 -14.27 2.09 -166.98 -0.35 -14.61 16 4 C -0.25 -6.90 9.50 -15.06 -0.14 -7.04 16 5 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 6 C 0.01 0.24 4.82 -17.43 -0.08 0.15 16 7 N -0.89 -24.31 11.22 55.49 0.62 -23.69 16 8 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.17 3.95 2.21 -69.09 -0.15 3.80 16 13 H 0.12 2.93 6.00 -51.93 -0.31 2.62 16 14 C -0.14 -2.80 7.93 37.16 0.29 -2.51 16 15 C 0.49 10.37 6.83 -10.98 -0.08 10.30 16 16 O -0.54 -13.19 14.67 5.56 0.08 -13.11 16 17 N -0.74 -12.14 4.97 -53.81 -0.27 -12.41 16 18 C 0.15 2.08 2.45 -67.93 -0.17 1.92 16 19 C -0.13 -1.80 5.49 -26.73 -0.15 -1.94 16 20 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 21 C -0.09 -0.89 2.72 -90.62 -0.25 -1.13 16 22 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 23 C -0.11 -1.03 5.21 -26.73 -0.14 -1.17 16 24 C -0.13 -1.35 5.39 -26.73 -0.14 -1.50 16 25 H 0.05 1.00 6.14 -51.93 -0.32 0.69 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 28 H 0.04 0.91 6.67 -51.93 -0.35 0.56 16 29 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.04 0.71 6.64 -51.93 -0.35 0.36 16 32 H 0.08 1.83 7.70 -51.92 -0.40 1.43 16 33 H 0.03 0.59 7.57 -51.92 -0.39 0.20 16 34 H 0.39 5.61 8.02 -40.82 -0.33 5.29 16 35 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -29.75 360.42 -8.68 -38.44 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.72 Total: 4.42 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.45 Total: -0.95 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.01 Total: -50.71 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.75 -8.68 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331328533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.891 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds