Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47314 * 2 1 4 4 C 1.36935 * 119.99851 * 85.03613 * 3 2 1 5 5 H 1.07994 * 120.00128 * 39.81152 * 4 3 2 6 6 C 1.38813 * 119.99944 * 219.80840 * 4 3 2 7 7 N 1.31615 * 120.00298 * 11.67178 * 6 4 3 8 8 Si 1.86806 * 120.00194 * 191.67064 * 6 4 3 9 9 H 1.48504 * 109.46541 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46950 * 119.99647 * 8 6 4 11 11 H 1.48498 * 109.47333 * 240.00216 * 8 6 4 12 12 C 1.46495 * 120.00206 * 265.04123 * 3 2 1 13 13 H 1.09003 * 109.47470 * 174.78073 * 12 3 2 14 14 C 1.53007 * 109.47169 * 54.77838 * 12 3 2 15 15 C 1.50697 * 109.47310 * 294.78284 * 12 3 2 16 16 O 1.21284 * 119.99726 * 359.97438 * 15 12 3 17 17 N 1.34776 * 120.00357 * 180.02562 * 15 12 3 18 18 C 1.46503 * 119.99974 * 179.97438 * 17 15 12 19 19 C 1.53002 * 109.46914 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47286 * 295.00045 * 19 18 17 21 21 C 1.53002 * 109.47286 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47091 * 59.99941 * 21 20 19 23 23 C 1.53003 * 109.47243 * 300.00362 * 22 21 20 24 24 C 1.52997 * 109.47121 * 59.99587 * 23 22 21 25 25 H 1.08995 * 109.47152 * 60.00435 * 1 2 3 26 26 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47367 * 299.99715 * 1 2 3 28 28 H 1.08999 * 109.47707 * 120.00031 * 2 1 3 29 29 H 1.09000 * 109.47367 * 240.00285 * 2 1 3 30 30 H 0.97005 * 120.00549 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.47010 * 300.00280 * 14 12 3 32 32 H 1.08998 * 109.46670 * 60.00279 * 14 12 3 33 33 H 1.09004 * 109.46880 * 180.02562 * 14 12 3 34 34 H 0.97003 * 119.99949 * 359.97438 * 17 15 12 35 35 H 1.09003 * 109.47225 * 299.99789 * 18 17 15 36 36 H 1.09003 * 109.47014 * 59.99799 * 18 17 15 37 37 H 1.08999 * 109.46878 * 55.00564 * 19 18 17 38 38 H 1.09002 * 109.47087 * 300.00041 * 20 19 18 39 39 H 1.08999 * 109.46927 * 60.00349 * 20 19 18 40 40 H 1.08999 * 109.46878 * 300.00519 * 21 20 19 41 41 H 1.08997 * 109.47427 * 179.97438 * 21 20 19 42 42 H 1.08992 * 109.47151 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47073 * 60.00086 * 22 21 20 44 44 H 1.09002 * 109.46861 * 299.99854 * 23 22 21 45 45 H 1.09000 * 109.47348 * 180.02562 * 23 22 21 46 46 H 1.09005 * 109.47298 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.47035 * 60.00374 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0609 1.1815 5 1 2.5274 1.5538 2.0570 6 6 1.7979 3.4017 1.2537 7 7 1.1288 3.9606 0.2676 8 14 2.2738 4.4130 2.7505 9 1 3.0163 3.5571 3.7104 10 1 3.1361 5.5459 2.3286 11 1 1.0478 4.9400 3.4021 12 6 2.3659 2.0353 -1.2639 13 1 2.6181 3.0789 -1.0757 14 6 1.1738 1.9631 -2.2203 15 6 3.5490 1.3363 -1.8825 16 8 4.0526 0.3857 -1.3225 17 7 4.0482 1.7682 -3.0576 18 6 5.1987 1.0890 -3.6586 19 6 5.5617 1.7720 -4.9787 20 6 4.4174 1.5911 -5.9781 21 6 4.7801 2.2747 -7.2980 22 6 6.0555 1.6469 -7.8639 23 6 7.1998 1.8277 -6.8645 24 6 6.8371 1.1442 -5.5446 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 0.8825 4.8974 0.3182 31 1 0.9217 0.9195 -2.4085 32 1 0.3180 2.4687 -1.7729 33 1 1.4326 2.4494 -3.1609 34 1 3.6457 2.5287 -3.5053 35 1 6.0478 1.1404 -2.9770 36 1 4.9468 0.0453 -3.8471 37 1 5.7271 2.8352 -4.8042 38 1 4.2521 0.5279 -6.1525 39 1 3.5090 2.0388 -5.5751 40 1 4.9452 3.3378 -7.1231 41 1 3.9651 2.1454 -8.0101 42 1 6.3141 2.1341 -8.8039 43 1 5.8905 0.5837 -8.0387 44 1 7.3649 2.8909 -6.6897 45 1 8.1086 1.3809 -7.2678 46 1 7.6522 1.2734 -4.8325 47 1 6.6721 0.0810 -5.7194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331361948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = -51.626312 kcal Electronic energy + Delta-G solvation = -23493.379894 eV Core-core repulsion = 20289.307094 eV Total energy + Delta-G solvation = -3204.072800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.41120 -38.37261 -35.74755 -34.23653 -31.78673 -31.51767 -30.87796 -30.07374 -28.22944 -25.64358 -24.10160 -22.92427 -22.52418 -21.31887 -20.55828 -19.94294 -19.02732 -17.02843 -16.11988 -15.42869 -15.39010 -14.76228 -14.49446 -14.27383 -14.17578 -13.92291 -13.77460 -13.37159 -12.91402 -12.61770 -12.34478 -12.27266 -12.13883 -11.82355 -11.70824 -11.44847 -11.28457 -11.26178 -11.07582 -11.05104 -10.90527 -10.70057 -10.57632 -10.28093 -10.24269 -10.15571 -10.09362 -9.72354 -9.57414 -8.69684 -8.50613 -8.40453 -6.48366 -5.83022 -3.36984 3.35306 3.44075 3.48500 3.66428 3.86612 4.49596 4.52159 4.59606 4.62111 5.01731 5.11483 5.20371 5.33273 5.34597 5.37458 5.38616 5.49636 5.51130 5.70367 5.77466 5.85440 5.86759 5.99415 6.00511 6.04528 6.11501 6.15889 6.25946 6.29008 6.33475 6.38690 6.47647 6.56370 6.65124 6.71331 6.86018 7.08657 7.14904 7.27098 7.38647 7.46591 7.85052 8.21962 8.56887 9.08912 9.28244 9.81880 10.42586 11.23534 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.004026 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.879779 B = 6953.836608 C = 7334.260587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 N -0.561 5.561 4 C -0.251 4.251 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.289 1.289 12 C 0.174 3.826 13 H 0.116 0.884 14 C -0.139 4.139 15 C 0.487 3.513 16 O -0.544 6.544 17 N -0.743 5.743 18 C 0.125 3.875 19 C -0.098 4.098 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.254 0.746 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.394 0.606 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -2.154 -15.854 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.027 3.973 3 N -0.280 5.280 4 C -0.381 4.381 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.540 5.540 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.215 1.215 12 C 0.062 3.938 13 H 0.134 0.866 14 C -0.198 4.198 15 C 0.274 3.726 16 O -0.419 6.419 17 N -0.398 5.398 18 C 0.000 4.000 19 C -0.117 4.117 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.228 0.772 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.086 -2.714 -15.393 17.161 hybrid contribution 0.083 1.021 0.471 1.127 sum 7.169 -1.693 -14.922 16.641 Atomic orbital electron populations 1.22399 0.99826 0.98236 1.02046 1.20720 0.91175 0.86822 0.98633 1.43404 1.72656 1.10188 1.01757 1.19162 1.36544 0.93282 0.89160 0.92147 1.25295 0.97073 0.98878 0.97449 1.69931 1.39502 1.12121 1.32432 0.86250 0.77829 0.80086 0.82798 1.20106 1.21556 1.21535 1.20265 0.88510 0.98578 0.86425 0.86617 1.22092 1.00772 0.99785 0.97126 1.23296 0.86133 0.84189 0.79028 1.90558 1.61432 1.28450 1.61489 1.46420 1.33619 1.35613 1.24178 1.21232 0.89538 0.96361 0.92857 1.21397 0.95472 1.00555 0.94230 1.21596 0.97886 1.01076 0.94672 1.21541 0.97305 0.99935 0.96941 1.21544 0.95244 1.00927 0.98024 1.21519 0.97837 1.00826 0.95388 1.21505 0.96854 0.99978 0.96644 0.93312 0.95326 0.92809 0.94489 0.94308 0.93607 0.94549 0.90021 0.94760 0.77171 0.92352 0.92400 0.90671 0.91867 0.91602 0.92000 0.92120 0.92355 0.92097 0.92022 0.92162 0.91772 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 9.99 37.16 0.37 -3.10 16 2 C 0.15 3.55 5.04 -4.04 -0.02 3.53 16 3 N -0.56 -14.36 2.05 -166.98 -0.34 -14.70 16 4 C -0.25 -6.98 9.49 -15.06 -0.14 -7.12 16 5 H 0.06 1.72 7.86 -52.49 -0.41 1.31 16 6 C 0.01 0.34 4.97 -17.43 -0.09 0.25 16 7 N -0.90 -24.34 11.05 55.49 0.61 -23.73 16 8 Si 0.90 21.49 29.57 -169.99 -5.03 16.46 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.17 4.00 2.19 -69.08 -0.15 3.85 16 13 H 0.12 2.94 6.11 -51.93 -0.32 2.62 16 14 C -0.14 -2.79 7.87 37.16 0.29 -2.50 16 15 C 0.49 10.47 6.88 -10.99 -0.08 10.40 16 16 O -0.54 -13.53 15.05 5.55 0.08 -13.45 16 17 N -0.74 -12.25 5.18 -60.29 -0.31 -12.56 16 18 C 0.12 1.78 5.07 -4.04 -0.02 1.76 16 19 C -0.10 -1.04 2.22 -90.62 -0.20 -1.24 16 20 C -0.11 -1.14 5.08 -26.73 -0.14 -1.28 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 23 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 24 C -0.11 -1.04 5.20 -26.73 -0.14 -1.18 16 25 H 0.05 1.01 5.99 -51.93 -0.31 0.70 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.04 0.89 6.71 -51.93 -0.35 0.54 16 30 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.04 0.71 6.59 -51.93 -0.34 0.37 16 32 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 33 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 34 H 0.39 5.66 7.07 -40.82 -0.29 5.37 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.69 7.18 -51.93 -0.37 0.31 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -30.04 359.03 -9.01 -39.05 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.65 Total: 3.56 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.78 Total: -0.04 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.04 Total: -51.00 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.04 -9.01 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331361948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.575 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds