Wall clock time and date at job start Tue Mar 31 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47314 * 2 1 4 4 C 1.36935 * 119.99851 * 85.03613 * 3 2 1 5 5 H 1.07994 * 120.00128 * 39.81152 * 4 3 2 6 6 C 1.38813 * 119.99944 * 219.80840 * 4 3 2 7 7 N 1.31615 * 120.00298 * 11.67178 * 6 4 3 8 8 Si 1.86806 * 120.00194 * 191.67064 * 6 4 3 9 9 H 1.48504 * 109.46541 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46950 * 119.99647 * 8 6 4 11 11 H 1.48498 * 109.47333 * 240.00216 * 8 6 4 12 12 C 1.46495 * 120.00206 * 265.04123 * 3 2 1 13 13 H 1.09003 * 109.47470 * 174.78073 * 12 3 2 14 14 C 1.53007 * 109.47169 * 54.77838 * 12 3 2 15 15 C 1.50697 * 109.47310 * 294.78284 * 12 3 2 16 16 O 1.21284 * 119.99726 * 359.97438 * 15 12 3 17 17 N 1.34776 * 120.00357 * 180.02562 * 15 12 3 18 18 C 1.46503 * 119.99974 * 179.97438 * 17 15 12 19 19 C 1.53002 * 109.46914 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47286 * 295.00045 * 19 18 17 21 21 C 1.53002 * 109.47286 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47091 * 59.99941 * 21 20 19 23 23 C 1.53003 * 109.47243 * 300.00362 * 22 21 20 24 24 C 1.52997 * 109.47121 * 59.99587 * 23 22 21 25 25 H 1.08995 * 109.47152 * 60.00435 * 1 2 3 26 26 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47367 * 299.99715 * 1 2 3 28 28 H 1.08999 * 109.47707 * 120.00031 * 2 1 3 29 29 H 1.09000 * 109.47367 * 240.00285 * 2 1 3 30 30 H 0.97005 * 120.00549 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.47010 * 300.00280 * 14 12 3 32 32 H 1.08998 * 109.46670 * 60.00279 * 14 12 3 33 33 H 1.09004 * 109.46880 * 180.02562 * 14 12 3 34 34 H 0.97003 * 119.99949 * 359.97438 * 17 15 12 35 35 H 1.09003 * 109.47225 * 299.99789 * 18 17 15 36 36 H 1.09003 * 109.47014 * 59.99799 * 18 17 15 37 37 H 1.08999 * 109.46878 * 55.00564 * 19 18 17 38 38 H 1.09002 * 109.47087 * 300.00041 * 20 19 18 39 39 H 1.08999 * 109.46927 * 60.00349 * 20 19 18 40 40 H 1.08999 * 109.46878 * 300.00519 * 21 20 19 41 41 H 1.08997 * 109.47427 * 179.97438 * 21 20 19 42 42 H 1.08992 * 109.47151 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47073 * 60.00086 * 22 21 20 44 44 H 1.09002 * 109.46861 * 299.99854 * 23 22 21 45 45 H 1.09000 * 109.47348 * 180.02562 * 23 22 21 46 46 H 1.09005 * 109.47298 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.47035 * 60.00374 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0609 1.1815 5 1 2.5274 1.5538 2.0570 6 6 1.7979 3.4017 1.2537 7 7 1.1288 3.9606 0.2676 8 14 2.2738 4.4130 2.7505 9 1 3.0163 3.5571 3.7104 10 1 3.1361 5.5459 2.3286 11 1 1.0478 4.9400 3.4021 12 6 2.3659 2.0353 -1.2639 13 1 2.6181 3.0789 -1.0757 14 6 1.1738 1.9631 -2.2203 15 6 3.5490 1.3363 -1.8825 16 8 4.0526 0.3857 -1.3225 17 7 4.0482 1.7682 -3.0576 18 6 5.1987 1.0890 -3.6586 19 6 5.5617 1.7720 -4.9787 20 6 4.4174 1.5911 -5.9781 21 6 4.7801 2.2747 -7.2980 22 6 6.0555 1.6469 -7.8639 23 6 7.1998 1.8277 -6.8645 24 6 6.8371 1.1442 -5.5446 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 0.8825 4.8974 0.3182 31 1 0.9217 0.9195 -2.4085 32 1 0.3180 2.4687 -1.7729 33 1 1.4326 2.4494 -3.1609 34 1 3.6457 2.5287 -3.5053 35 1 6.0478 1.1404 -2.9770 36 1 4.9468 0.0453 -3.8471 37 1 5.7271 2.8352 -4.8042 38 1 4.2521 0.5279 -6.1525 39 1 3.5090 2.0388 -5.5751 40 1 4.9452 3.3378 -7.1231 41 1 3.9651 2.1454 -8.0101 42 1 6.3141 2.1341 -8.8039 43 1 5.8905 0.5837 -8.0387 44 1 7.3649 2.8909 -6.6897 45 1 8.1086 1.3809 -7.2678 46 1 7.6522 1.2734 -4.8325 47 1 6.6721 0.0810 -5.7194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331361948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:48 Heat of formation + Delta-G solvation = -68.207448 kcal Electronic energy + Delta-G solvation = -23494.098906 eV Core-core repulsion = 20289.307094 eV Total energy + Delta-G solvation = -3204.791812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84741 -39.48587 -37.54784 -35.63556 -33.80363 -32.90286 -31.69037 -31.39080 -30.10814 -26.80690 -26.06360 -24.36165 -23.46149 -22.61343 -21.99309 -20.99537 -20.43079 -18.94107 -17.76122 -16.89020 -16.57537 -16.35373 -15.94408 -15.67565 -15.43258 -15.03345 -14.94175 -14.86410 -14.45548 -14.12381 -13.77440 -13.50450 -13.28359 -13.09616 -13.04558 -12.96545 -12.92725 -12.78724 -12.64533 -12.48560 -12.14316 -12.09137 -11.97540 -11.88577 -11.56358 -11.41755 -11.32032 -11.03921 -10.90564 -10.59573 -10.43324 -9.90705 -8.47217 -7.87936 -5.46237 1.44657 1.48160 1.58237 1.93223 2.37771 2.55373 3.29301 3.66808 3.69266 3.81105 3.87278 4.22258 4.24740 4.36892 4.41942 4.46751 4.56132 4.59577 4.62341 4.66778 4.72996 4.73703 4.81584 4.86221 4.89950 4.94823 4.98595 5.06097 5.09128 5.20021 5.29224 5.29708 5.32355 5.32437 5.41240 5.41800 5.47749 5.60501 5.63027 5.66908 5.70421 5.72486 6.48672 6.72711 7.17811 7.50950 7.84806 8.39585 9.15238 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.004026 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.879779 B = 6953.836608 C = 7334.260587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 N -0.579 5.579 4 C -0.277 4.277 5 H 0.041 0.959 6 C -0.021 4.021 7 N -0.907 5.907 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.173 3.827 13 H 0.091 0.909 14 C -0.124 4.124 15 C 0.488 3.512 16 O -0.583 6.583 17 N -0.723 5.723 18 C 0.126 3.874 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.111 4.111 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.255 0.745 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.407 0.593 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -1.588 -17.722 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.028 3.972 3 N -0.299 5.299 4 C -0.407 4.407 5 H 0.059 0.941 6 C -0.219 4.219 7 N -0.549 5.549 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.062 3.938 13 H 0.109 0.891 14 C -0.183 4.183 15 C 0.275 3.725 16 O -0.462 6.462 17 N -0.377 5.377 18 C 0.002 3.998 19 C -0.106 4.106 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.149 4.149 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.244 0.756 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.392 -2.127 -17.317 18.948 hybrid contribution 0.027 0.825 1.013 1.306 sum 7.419 -1.302 -16.304 17.960 Atomic orbital electron populations 1.22219 0.97917 1.00000 1.00905 1.20720 0.92611 0.85901 0.97989 1.43573 1.73492 1.10792 1.02000 1.19203 1.37561 0.94151 0.89794 0.94086 1.25830 0.96963 0.99303 0.99799 1.70023 1.39421 1.12205 1.33291 0.85379 0.77472 0.78538 0.80002 1.20444 1.21074 1.21111 1.20243 0.90174 0.97048 0.86372 0.89091 1.21906 0.98571 1.00159 0.97654 1.22888 0.85803 0.83692 0.80149 1.90540 1.62477 1.30216 1.62963 1.46165 1.33580 1.35391 1.22575 1.21360 0.87857 0.96298 0.94267 1.21330 0.96569 1.00334 0.92348 1.21589 0.97233 1.01050 0.95296 1.21526 0.97937 0.99897 0.96101 1.21551 0.94715 1.01015 0.98395 1.21506 0.98413 1.00826 0.94529 1.21505 0.95950 1.00032 0.97430 0.93253 0.92067 0.94971 0.95837 0.94185 0.93532 0.94035 0.92379 0.91385 0.75626 0.93685 0.93060 0.90274 0.92255 0.92055 0.91728 0.91421 0.91173 0.92131 0.91817 0.91120 0.91902 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.28 9.99 71.98 0.72 -5.56 16 2 C 0.15 7.23 5.04 86.38 0.44 7.67 16 3 N -0.58 -30.19 2.05 -682.22 -1.40 -31.59 16 4 C -0.28 -15.75 9.49 84.03 0.80 -14.95 16 5 H 0.04 2.44 7.86 -2.91 -0.02 2.42 16 6 C -0.02 -1.12 4.97 84.86 0.42 -0.70 16 7 N -0.91 -49.34 11.05 21.65 0.24 -49.10 16 8 Si 0.96 44.47 29.57 68.60 2.03 46.50 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 C 0.17 7.99 2.19 44.25 0.10 8.09 16 13 H 0.09 4.67 6.11 -2.39 -0.01 4.66 16 14 C -0.12 -4.88 7.87 71.98 0.57 -4.32 16 15 C 0.49 21.03 6.88 87.66 0.60 21.63 16 16 O -0.58 -29.45 15.05 -3.04 -0.05 -29.49 16 17 N -0.72 -23.21 5.18 -463.05 -2.40 -25.61 16 18 C 0.13 3.50 5.07 86.38 0.44 3.94 16 19 C -0.09 -1.70 2.22 -10.79 -0.02 -1.73 16 20 C -0.11 -2.03 5.08 30.59 0.16 -1.88 16 21 C -0.12 -1.69 5.92 30.60 0.18 -1.51 16 22 C -0.12 -1.56 5.92 30.60 0.18 -1.37 16 23 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 24 C -0.11 -1.88 5.20 30.59 0.16 -1.72 16 25 H 0.05 2.02 5.99 -2.39 -0.01 2.00 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.02 1.14 8.08 -2.39 -0.02 1.12 16 29 H 0.04 1.85 6.71 -2.39 -0.02 1.83 16 30 H 0.26 13.35 8.31 -92.70 -0.77 12.58 16 31 H 0.04 1.57 6.59 -2.39 -0.02 1.55 16 32 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 33 H 0.07 2.16 7.56 -2.38 -0.02 2.14 16 34 H 0.41 11.02 7.07 -92.71 -0.66 10.36 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.14 7.18 -2.39 -0.02 1.12 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 46 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -65.05 359.03 3.60 -61.45 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.27 Total: 21.64 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.91 Total: 6.19 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -3.56 Total: -106.29 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.05 Total: -29.49 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.05 3.60 -61.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331361948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.757 kcal (2) G-P(sol) polarization free energy of solvation -65.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds