Wall clock time and date at job start Tue Mar 31 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47467 * 2 1 4 4 C 1.36936 * 120.00145 * 272.04921 * 3 2 1 5 5 H 1.07992 * 119.99985 * 198.56436 * 4 3 2 6 6 C 1.38810 * 119.99904 * 18.28333 * 4 3 2 7 7 N 1.31618 * 119.99962 * 353.50972 * 6 4 3 8 8 Si 1.86796 * 120.00135 * 173.51018 * 6 4 3 9 9 H 1.48498 * 109.47115 * 59.99958 * 8 6 4 10 10 H 1.48494 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46932 * 299.99995 * 8 6 4 12 12 C 1.46502 * 119.99773 * 92.04499 * 3 2 1 13 13 H 1.09006 * 109.46863 * 185.39025 * 12 3 2 14 14 C 1.52995 * 109.47468 * 305.39013 * 12 3 2 15 15 C 1.50702 * 109.47188 * 65.39588 * 12 3 2 16 16 O 1.21285 * 119.99653 * 339.44342 * 15 12 3 17 17 N 1.34773 * 120.00037 * 159.44991 * 15 12 3 18 18 C 1.46504 * 119.99744 * 179.97438 * 17 15 12 19 19 C 1.53004 * 109.47046 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.46667 * 295.00240 * 19 18 17 21 21 C 1.53004 * 109.46667 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47057 * 59.99998 * 21 20 19 23 23 C 1.53003 * 109.46845 * 299.99897 * 22 21 20 24 24 C 1.52990 * 109.47258 * 60.00132 * 23 22 21 25 25 H 1.08991 * 109.47718 * 171.73780 * 1 2 3 26 26 H 1.09003 * 109.46939 * 291.73343 * 1 2 3 27 27 H 1.09005 * 109.47154 * 51.72800 * 1 2 3 28 28 H 1.09000 * 109.46868 * 239.99575 * 2 1 3 29 29 H 1.09002 * 109.46558 * 119.99986 * 2 1 3 30 30 H 0.97004 * 120.00154 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47069 * 60.00137 * 14 12 3 32 32 H 1.08996 * 109.47470 * 180.02562 * 14 12 3 33 33 H 1.09001 * 109.47497 * 300.00416 * 14 12 3 34 34 H 0.96997 * 120.00141 * 359.97438 * 17 15 12 35 35 H 1.09003 * 109.47198 * 299.99924 * 18 17 15 36 36 H 1.09002 * 109.46954 * 60.00187 * 18 17 15 37 37 H 1.08999 * 109.47000 * 55.00054 * 19 18 17 38 38 H 1.08999 * 109.47259 * 299.99656 * 20 19 18 39 39 H 1.08993 * 109.47678 * 60.00520 * 20 19 18 40 40 H 1.08999 * 109.47000 * 299.99814 * 21 20 19 41 41 H 1.09005 * 109.47161 * 179.97438 * 21 20 19 42 42 H 1.09008 * 109.46871 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47365 * 60.00040 * 22 21 20 44 44 H 1.08997 * 109.47018 * 299.99282 * 23 22 21 45 45 H 1.09005 * 109.46651 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47167 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47330 * 60.00225 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2067 2.0408 -1.1851 5 1 2.8324 2.9203 -1.2201 6 6 1.5980 1.5757 -2.3427 7 7 0.9458 0.4325 -2.3295 8 14 1.7045 2.5720 -3.9191 9 1 3.1290 2.7379 -4.3046 10 1 0.9772 1.8635 -5.0026 11 1 1.0915 3.9073 -3.7031 12 6 2.3053 2.0566 1.2680 13 1 2.5637 3.0978 1.0746 14 6 1.0701 1.9965 2.1688 15 6 3.4600 1.3713 1.9522 16 8 3.7508 0.2318 1.6556 17 7 4.1692 2.0246 2.8938 18 6 5.2913 1.3581 3.5594 19 6 5.9203 2.3121 4.5769 20 6 6.5354 3.5060 3.8440 21 6 7.1638 4.4603 4.8616 22 6 8.2539 3.7254 5.6444 23 6 7.6386 2.5315 6.3772 24 6 7.0102 1.5773 5.3597 25 1 -0.3634 -1.0169 -0.1477 26 1 -0.3633 0.3805 0.9546 27 1 -0.3634 0.6366 -0.8068 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.5201 0.1076 -3.1383 31 1 0.8117 0.9553 2.3621 32 1 1.2834 2.4995 3.1119 33 1 0.2350 2.4922 1.6739 34 1 3.9367 2.9360 3.1308 35 1 4.9317 0.4660 4.0722 36 1 6.0375 1.0745 2.8171 37 1 5.1534 2.6649 5.2664 38 1 7.3023 3.1532 3.1545 39 1 5.7589 4.0297 3.2868 40 1 6.3966 4.8130 5.5508 41 1 7.6025 5.3107 4.3395 42 1 8.7012 4.4052 6.3697 43 1 9.0211 3.3727 4.9552 44 1 6.8715 2.8843 7.0665 45 1 8.4151 2.0083 6.9353 46 1 6.5723 0.7265 5.8817 47 1 7.7774 1.2245 4.6705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331361949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:51 Heat of formation + Delta-G solvation = -32.740880 kcal Electronic energy + Delta-G solvation = -23338.778617 eV Core-core repulsion = 20135.524751 eV Total energy + Delta-G solvation = -3203.253866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.52639 -38.49193 -35.86885 -34.34663 -32.25270 -31.18296 -30.84003 -29.54925 -28.48242 -25.84858 -24.08491 -22.90981 -22.44629 -21.32588 -20.59442 -20.00654 -19.11266 -16.88422 -16.28122 -15.59257 -15.40711 -14.99321 -14.79982 -14.31360 -14.23582 -13.83804 -13.63827 -13.36707 -12.99220 -12.55748 -12.39709 -12.26607 -12.03060 -11.85028 -11.78121 -11.54395 -11.32407 -11.17383 -11.10918 -10.90759 -10.66573 -10.62999 -10.58451 -10.38652 -10.30919 -10.21893 -9.86092 -9.64233 -9.31837 -8.78990 -8.55548 -8.18729 -6.66031 -5.57186 -3.08929 3.41869 3.45760 3.47840 3.48854 3.70803 4.45958 4.52207 4.53601 4.56653 4.95823 5.05585 5.13336 5.27169 5.29677 5.32119 5.38127 5.44528 5.57151 5.58804 5.67334 5.75903 5.81367 5.89973 5.95112 5.95550 5.98670 6.04592 6.06751 6.10855 6.18493 6.30068 6.32512 6.58183 6.83425 6.91900 6.98244 7.22841 7.37061 7.48100 7.74200 8.03060 8.13395 8.34804 8.58404 9.01569 9.36126 9.94174 10.40013 11.36124 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.003724 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.668268 B = 7516.240499 C = 8102.911825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.174 3.826 3 N -0.574 5.574 4 C -0.251 4.251 5 H 0.069 0.931 6 C -0.001 4.001 7 N -0.898 5.898 8 Si 0.908 3.092 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.285 1.285 12 C 0.160 3.840 13 H 0.080 0.920 14 C -0.151 4.151 15 C 0.491 3.509 16 O -0.530 6.530 17 N -0.743 5.743 18 C 0.124 3.876 19 C -0.096 4.096 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.016 0.984 26 H 0.003 0.997 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.017 0.983 30 H 0.250 0.750 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 6.818 16.796 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.050 3.950 3 N -0.294 5.294 4 C -0.380 4.380 5 H 0.086 0.914 6 C -0.198 4.198 7 N -0.544 5.544 8 Si 0.738 3.262 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.212 1.212 12 C 0.046 3.954 13 H 0.098 0.902 14 C -0.210 4.210 15 C 0.276 3.724 16 O -0.404 6.404 17 N -0.398 5.398 18 C 0.000 4.000 19 C -0.115 4.115 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.151 4.151 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.856 5.847 16.351 19.967 hybrid contribution -0.001 0.904 -0.710 1.149 sum 9.855 6.751 15.641 19.681 Atomic orbital electron populations 1.22560 0.99621 0.99089 0.98628 1.20810 0.91582 0.83618 0.99039 1.43945 1.75100 1.11411 0.98912 1.19252 1.23995 1.08688 0.86089 0.91351 1.24931 0.98913 0.97624 0.98285 1.70292 1.38504 1.19087 1.26517 0.86280 0.77427 0.79466 0.83003 1.21247 1.21651 1.21173 1.20194 0.90931 0.95943 0.88288 0.90241 1.22259 0.98865 1.02134 0.97760 1.22940 0.84259 0.87324 0.77911 1.90608 1.68769 1.18533 1.62461 1.46388 1.33547 1.17870 1.41980 1.21261 0.89069 0.95146 0.94554 1.21388 0.97595 0.95704 0.96841 1.21606 1.00270 0.95798 0.97651 1.21539 0.98148 0.97943 0.98053 1.21551 0.98045 0.97130 0.99080 1.21514 0.99911 0.96367 0.97734 1.21505 0.97818 0.97884 0.97844 0.96444 0.97848 0.89765 0.89429 0.96468 0.93929 0.92344 0.93936 0.91587 0.77353 0.92243 0.92136 0.90734 0.91742 0.91671 0.92061 0.92090 0.92325 0.92034 0.92058 0.92121 0.91753 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.96 37.16 0.33 -3.14 16 2 C 0.17 4.60 4.44 -4.04 -0.02 4.59 16 3 N -0.57 -14.76 2.32 -166.98 -0.39 -15.15 16 4 C -0.25 -6.91 9.67 -15.06 -0.15 -7.06 16 5 H 0.07 1.82 7.79 -52.49 -0.41 1.41 16 6 C 0.00 -0.02 5.29 -17.43 -0.09 -0.11 16 7 N -0.90 -25.68 7.38 55.49 0.41 -25.27 16 8 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.16 3.30 3.11 -69.08 -0.21 3.09 16 13 H 0.08 1.52 7.86 -51.93 -0.41 1.11 16 14 C -0.15 -2.70 8.02 37.15 0.30 -2.40 16 15 C 0.49 9.83 7.01 -10.99 -0.08 9.75 16 16 O -0.53 -12.94 14.33 5.55 0.08 -12.86 16 17 N -0.74 -10.97 5.28 -60.29 -0.32 -11.29 16 18 C 0.12 1.64 5.07 -4.04 -0.02 1.62 16 19 C -0.10 -0.92 2.22 -90.62 -0.20 -1.13 16 20 C -0.12 -1.07 5.08 -26.73 -0.14 -1.21 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 23 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 24 C -0.11 -0.97 5.20 -26.74 -0.14 -1.11 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.00 0.06 5.90 -51.93 -0.31 -0.25 16 27 H 0.08 2.31 6.05 -51.93 -0.31 1.99 16 28 H 0.09 2.63 6.12 -51.93 -0.32 2.31 16 29 H 0.02 0.46 6.12 -51.93 -0.32 0.14 16 30 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.06 1.13 6.35 -51.93 -0.33 0.80 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.39 4.67 7.65 -40.82 -0.31 4.36 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.62 7.18 -51.93 -0.37 0.25 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -31.32 353.48 -9.37 -40.69 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.56 Total: 1.99 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -0.89 Total: -0.29 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.30 Total: -51.71 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.32 -9.37 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331361949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.948 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds