Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47467 * 2 1 4 4 C 1.36936 * 120.00145 * 272.04921 * 3 2 1 5 5 H 1.07992 * 119.99985 * 198.56436 * 4 3 2 6 6 C 1.38810 * 119.99904 * 18.28333 * 4 3 2 7 7 N 1.31618 * 119.99962 * 353.50972 * 6 4 3 8 8 Si 1.86796 * 120.00135 * 173.51018 * 6 4 3 9 9 H 1.48498 * 109.47115 * 59.99958 * 8 6 4 10 10 H 1.48494 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46932 * 299.99995 * 8 6 4 12 12 C 1.46502 * 119.99773 * 92.04499 * 3 2 1 13 13 H 1.09006 * 109.46863 * 185.39025 * 12 3 2 14 14 C 1.52995 * 109.47468 * 305.39013 * 12 3 2 15 15 C 1.50702 * 109.47188 * 65.39588 * 12 3 2 16 16 O 1.21285 * 119.99653 * 339.44342 * 15 12 3 17 17 N 1.34773 * 120.00037 * 159.44991 * 15 12 3 18 18 C 1.46504 * 119.99744 * 179.97438 * 17 15 12 19 19 C 1.53004 * 109.47046 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.46667 * 295.00240 * 19 18 17 21 21 C 1.53004 * 109.46667 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47057 * 59.99998 * 21 20 19 23 23 C 1.53003 * 109.46845 * 299.99897 * 22 21 20 24 24 C 1.52990 * 109.47258 * 60.00132 * 23 22 21 25 25 H 1.08991 * 109.47718 * 171.73780 * 1 2 3 26 26 H 1.09003 * 109.46939 * 291.73343 * 1 2 3 27 27 H 1.09005 * 109.47154 * 51.72800 * 1 2 3 28 28 H 1.09000 * 109.46868 * 239.99575 * 2 1 3 29 29 H 1.09002 * 109.46558 * 119.99986 * 2 1 3 30 30 H 0.97004 * 120.00154 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47069 * 60.00137 * 14 12 3 32 32 H 1.08996 * 109.47470 * 180.02562 * 14 12 3 33 33 H 1.09001 * 109.47497 * 300.00416 * 14 12 3 34 34 H 0.96997 * 120.00141 * 359.97438 * 17 15 12 35 35 H 1.09003 * 109.47198 * 299.99924 * 18 17 15 36 36 H 1.09002 * 109.46954 * 60.00187 * 18 17 15 37 37 H 1.08999 * 109.47000 * 55.00054 * 19 18 17 38 38 H 1.08999 * 109.47259 * 299.99656 * 20 19 18 39 39 H 1.08993 * 109.47678 * 60.00520 * 20 19 18 40 40 H 1.08999 * 109.47000 * 299.99814 * 21 20 19 41 41 H 1.09005 * 109.47161 * 179.97438 * 21 20 19 42 42 H 1.09008 * 109.46871 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47365 * 60.00040 * 22 21 20 44 44 H 1.08997 * 109.47018 * 299.99282 * 23 22 21 45 45 H 1.09005 * 109.46651 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47167 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47330 * 60.00225 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2067 2.0408 -1.1851 5 1 2.8324 2.9203 -1.2201 6 6 1.5980 1.5757 -2.3427 7 7 0.9458 0.4325 -2.3295 8 14 1.7045 2.5720 -3.9191 9 1 3.1290 2.7379 -4.3046 10 1 0.9772 1.8635 -5.0026 11 1 1.0915 3.9073 -3.7031 12 6 2.3053 2.0566 1.2680 13 1 2.5637 3.0978 1.0746 14 6 1.0701 1.9965 2.1688 15 6 3.4600 1.3713 1.9522 16 8 3.7508 0.2318 1.6556 17 7 4.1692 2.0246 2.8938 18 6 5.2913 1.3581 3.5594 19 6 5.9203 2.3121 4.5769 20 6 6.5354 3.5060 3.8440 21 6 7.1638 4.4603 4.8616 22 6 8.2539 3.7254 5.6444 23 6 7.6386 2.5315 6.3772 24 6 7.0102 1.5773 5.3597 25 1 -0.3634 -1.0169 -0.1477 26 1 -0.3633 0.3805 0.9546 27 1 -0.3634 0.6366 -0.8068 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.5201 0.1076 -3.1383 31 1 0.8117 0.9553 2.3621 32 1 1.2834 2.4995 3.1119 33 1 0.2350 2.4922 1.6739 34 1 3.9367 2.9360 3.1308 35 1 4.9317 0.4660 4.0722 36 1 6.0375 1.0745 2.8171 37 1 5.1534 2.6649 5.2664 38 1 7.3023 3.1532 3.1545 39 1 5.7589 4.0297 3.2868 40 1 6.3966 4.8130 5.5508 41 1 7.6025 5.3107 4.3395 42 1 8.7012 4.4052 6.3697 43 1 9.0211 3.3727 4.9552 44 1 6.8715 2.8843 7.0665 45 1 8.4151 2.0083 6.9353 46 1 6.5723 0.7265 5.8817 47 1 7.7774 1.2245 4.6705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331361949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -50.932972 kcal Electronic energy + Delta-G solvation = -23339.567486 eV Core-core repulsion = 20135.524751 eV Total energy + Delta-G solvation = -3204.042734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89876 -39.51601 -37.68587 -35.65849 -34.05177 -32.32962 -31.62267 -31.32458 -30.34496 -26.94808 -25.97796 -24.20294 -23.46656 -22.70673 -21.99200 -20.98564 -20.42208 -18.85691 -17.72045 -17.30320 -16.52732 -16.35755 -16.07608 -15.57262 -15.19789 -14.96695 -14.92589 -14.87519 -14.60602 -13.80417 -13.78086 -13.63306 -13.18636 -13.10123 -13.01870 -12.99921 -12.80029 -12.63714 -12.51444 -12.44179 -12.29922 -11.97918 -11.88784 -11.82150 -11.64320 -11.32338 -11.26973 -11.03443 -10.90617 -10.56653 -10.26825 -9.93935 -8.66692 -7.66444 -5.19430 1.50082 1.52016 1.58410 1.87494 2.34318 2.58445 3.36655 3.68490 3.69564 3.80777 3.86462 4.12835 4.24636 4.36431 4.37876 4.41740 4.49366 4.56619 4.59556 4.66453 4.73372 4.78924 4.81408 4.89502 4.95130 5.04515 5.08950 5.19836 5.21014 5.28467 5.29192 5.29895 5.31992 5.37217 5.41436 5.46279 5.47681 5.59560 5.62127 5.67358 5.94693 6.27542 6.45624 6.73536 7.25507 7.49977 7.94130 8.36359 9.26098 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.003724 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.668268 B = 7516.240499 C = 8102.911825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.187 3.813 3 N -0.592 5.592 4 C -0.265 4.265 5 H 0.075 0.925 6 C -0.053 4.053 7 N -0.921 5.921 8 Si 0.973 3.027 9 H -0.285 1.285 10 H -0.297 1.297 11 H -0.274 1.274 12 C 0.151 3.849 13 H 0.098 0.902 14 C -0.140 4.140 15 C 0.491 3.509 16 O -0.581 6.581 17 N -0.719 5.719 18 C 0.125 3.875 19 C -0.084 4.084 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.113 4.113 25 H 0.019 0.981 26 H 0.024 0.976 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.012 0.988 30 H 0.243 0.757 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.411 0.589 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 9.066 18.764 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 N -0.313 5.313 4 C -0.394 4.394 5 H 0.093 0.907 6 C -0.247 4.247 7 N -0.568 5.568 8 Si 0.801 3.199 9 H -0.211 1.211 10 H -0.223 1.223 11 H -0.200 1.200 12 C 0.040 3.960 13 H 0.116 0.884 14 C -0.199 4.199 15 C 0.277 3.723 16 O -0.460 6.460 17 N -0.373 5.373 18 C 0.001 3.999 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.151 4.151 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.248 0.752 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.320 8.164 18.387 22.611 hybrid contribution -0.043 0.214 -1.241 1.260 sum 10.278 8.379 17.146 21.676 Atomic orbital electron populations 1.22323 0.98406 0.98758 0.98725 1.20462 0.92413 0.84311 0.96568 1.44066 1.75727 1.11144 1.00367 1.19601 1.23898 1.08748 0.87169 0.90730 1.25677 0.99189 0.98609 1.01269 1.70505 1.39330 1.20291 1.26680 0.85269 0.77146 0.78308 0.79161 1.21102 1.22320 1.19963 1.20514 0.92259 0.96288 0.86979 0.88449 1.22115 0.97138 1.01535 0.99078 1.22672 0.84411 0.86659 0.78574 1.90596 1.70208 1.20729 1.64447 1.46088 1.32735 1.18348 1.40160 1.21353 0.87921 0.95941 0.94657 1.21314 0.98047 0.94941 0.95947 1.21606 0.99951 0.95918 0.97906 1.21518 0.98447 0.97589 0.97780 1.21565 0.97804 0.97309 0.99197 1.21496 1.00266 0.96030 0.97360 1.21514 0.97325 0.98294 0.97980 0.96228 0.95674 0.92181 0.93610 0.97033 0.94698 0.94078 0.89489 0.92040 0.75187 0.93033 0.94136 0.89234 0.93088 0.91819 0.91104 0.91740 0.91127 0.92651 0.91282 0.91329 0.91560 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.18 8.96 71.98 0.65 -5.53 16 2 C 0.19 10.20 4.44 86.38 0.38 10.58 16 3 N -0.59 -30.65 2.32 -682.21 -1.59 -32.24 16 4 C -0.26 -14.63 9.67 84.03 0.81 -13.82 16 5 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 6 C -0.05 -2.98 5.29 84.86 0.45 -2.53 16 7 N -0.92 -54.10 7.38 21.65 0.16 -53.94 16 8 Si 0.97 45.36 29.56 68.60 2.03 47.39 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.15 6.07 3.11 44.24 0.14 6.21 16 13 H 0.10 3.51 7.86 -2.38 -0.02 3.49 16 14 C -0.14 -4.69 8.02 71.98 0.58 -4.11 16 15 C 0.49 19.36 7.01 87.66 0.61 19.98 16 16 O -0.58 -28.93 14.33 -3.05 -0.04 -28.97 16 17 N -0.72 -20.02 5.28 -463.04 -2.45 -22.47 16 18 C 0.13 3.20 5.07 86.38 0.44 3.64 16 19 C -0.08 -1.43 2.22 -10.79 -0.02 -1.45 16 20 C -0.12 -1.93 5.08 30.60 0.16 -1.77 16 21 C -0.12 -1.51 5.92 30.60 0.18 -1.32 16 22 C -0.12 -1.48 5.92 30.60 0.18 -1.30 16 23 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 24 C -0.11 -1.75 5.20 30.59 0.16 -1.59 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.02 1.11 5.90 -2.39 -0.01 1.09 16 27 H 0.06 3.34 6.05 -2.38 -0.01 3.32 16 28 H 0.05 2.86 6.12 -2.39 -0.01 2.85 16 29 H 0.01 0.63 6.12 -2.39 -0.01 0.62 16 30 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.04 1.52 6.35 -2.38 -0.02 1.50 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 34 H 0.41 8.54 7.65 -92.71 -0.71 7.83 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.06 7.18 -2.39 -0.02 1.05 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -69.54 353.48 3.22 -66.32 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.22 Total: 18.15 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 4.89 Total: 5.76 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.87 Total: -108.64 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.04 Total: -28.97 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -69.54 3.22 -66.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331361949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.386 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds