Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47194 * 2 1 4 4 C 1.34772 * 120.00101 * 83.55563 * 3 2 1 5 5 O 1.21593 * 119.99882 * 186.17791 * 4 3 2 6 6 N 1.34777 * 120.00408 * 6.17630 * 4 3 2 7 7 C 1.46499 * 120.00125 * 184.77409 * 6 4 3 8 8 C 1.53002 * 109.47036 * 184.90886 * 7 6 4 9 9 C 1.50700 * 115.54911 * 53.71574 * 8 7 6 10 10 H 1.07998 * 120.00288 * 215.61178 * 9 8 7 11 11 C 1.37876 * 119.99931 * 35.33560 * 9 8 7 12 12 N 1.31519 * 119.99975 * 9.36393 * 11 9 8 13 13 Si 1.86803 * 120.00051 * 189.36302 * 11 9 8 14 14 H 1.48495 * 109.47020 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47328 * 120.00285 * 13 11 9 16 16 H 1.48504 * 109.47160 * 240.00293 * 13 11 9 17 17 C 1.52994 * 117.50071 * 199.38723 * 8 7 6 18 18 C 1.52996 * 117.50058 * 268.04665 * 8 7 6 19 19 C 1.46497 * 119.99826 * 263.55480 * 3 2 1 20 20 H 1.09000 * 109.47637 * 180.02562 * 19 3 2 21 21 C 1.52996 * 109.47348 * 59.99762 * 19 3 2 22 22 C 1.53004 * 109.46990 * 300.00074 * 19 3 2 23 23 C 1.53000 * 109.47268 * 179.97438 * 22 19 3 24 24 C 1.53000 * 109.47278 * 299.99794 * 22 19 3 25 25 H 1.09001 * 109.47002 * 60.00089 * 1 2 3 26 26 H 1.08992 * 109.47065 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47243 * 300.00645 * 1 2 3 28 28 H 1.08994 * 109.47420 * 239.99673 * 2 1 3 29 29 H 1.09002 * 109.46927 * 119.99129 * 2 1 3 30 30 H 0.96995 * 119.99348 * 4.77920 * 6 4 3 31 31 H 1.09004 * 109.47047 * 64.91180 * 7 6 4 32 32 H 1.09003 * 109.47223 * 304.91274 * 7 6 4 33 33 H 0.97003 * 119.99747 * 184.97123 * 12 11 9 34 34 H 1.09000 * 117.50168 * 215.00828 * 17 8 7 35 35 H 1.09004 * 117.49364 * 0.02562 * 17 8 7 36 36 H 1.09001 * 117.49496 * 359.97438 * 18 8 7 37 37 H 1.08998 * 117.49967 * 144.96854 * 18 8 7 38 38 H 1.09002 * 109.47696 * 300.00228 * 21 19 3 39 39 H 1.09008 * 109.47006 * 60.00220 * 21 19 3 40 40 H 1.09000 * 109.47773 * 180.02562 * 21 19 3 41 41 H 1.08995 * 109.47035 * 60.00027 * 22 19 3 42 42 H 1.09000 * 109.46966 * 59.99605 * 23 22 19 43 43 H 1.09000 * 109.47535 * 180.02562 * 23 22 19 44 44 H 1.09010 * 109.46924 * 300.00093 * 23 22 19 45 45 H 1.08999 * 109.47369 * 180.02562 * 24 22 19 46 46 H 1.09000 * 109.46918 * 300.00371 * 24 22 19 47 47 H 1.08997 * 109.46684 * 59.99730 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1195 2.0602 1.1598 5 8 2.4166 3.2393 1.1500 6 7 1.8914 1.4325 2.3304 7 6 1.8983 2.1926 3.5827 8 6 1.7368 1.2324 4.7630 9 6 2.7230 0.0941 4.8144 10 1 2.4109 -0.8750 5.1745 11 6 4.0225 0.2884 4.3964 12 7 4.4524 1.5020 4.1281 13 14 5.1723 -1.1721 4.2112 14 1 4.4508 -2.4189 4.5715 15 1 5.6387 -1.2596 2.8041 16 1 6.3415 -0.9988 5.1103 17 6 1.2688 1.8224 6.0948 18 6 0.3167 0.9598 5.2627 19 6 2.3968 2.0243 -1.2607 20 1 2.7334 3.0420 -1.0629 21 6 1.1882 2.0595 -2.1982 22 6 3.5289 1.2319 -1.9177 23 6 3.9237 1.9031 -3.2347 24 6 4.7376 1.1967 -0.9803 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7227 0.4774 2.3436 31 1 1.0741 2.9059 3.5793 32 1 2.8425 2.7288 3.6771 33 1 5.3427 1.6320 3.7655 34 1 1.6744 1.3873 7.0082 35 1 1.0756 2.8946 6.1300 36 1 -0.5025 1.4648 4.7510 37 1 0.0956 -0.0430 5.6283 38 1 0.8520 1.0417 -2.3961 39 1 0.3817 2.6241 -1.7301 40 1 1.4699 2.5376 -3.1364 41 1 3.1927 0.2142 -2.1155 42 1 4.2597 2.9211 -3.0372 43 1 4.7299 1.3384 -3.7030 44 1 3.0624 1.9279 -3.9024 45 1 5.5442 0.6326 -1.4485 46 1 5.0737 2.2145 -0.7824 47 1 4.4559 0.7183 -0.0423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331737669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = -15.401045 kcal Electronic energy + Delta-G solvation = -24415.622374 eV Core-core repulsion = 21213.120419 eV Total energy + Delta-G solvation = -3202.501955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82622 -37.34726 -36.32968 -34.43220 -32.73819 -32.10572 -30.36489 -29.54243 -26.90797 -25.86420 -25.11125 -23.14726 -23.00856 -21.21150 -19.92541 -19.24966 -18.58137 -17.66266 -16.13259 -15.95693 -15.12761 -14.71228 -14.41922 -14.20634 -13.96630 -13.60324 -13.49751 -13.14289 -12.91404 -12.71838 -12.41069 -12.29189 -12.11386 -11.98366 -11.81767 -11.63282 -11.47162 -11.29198 -11.02486 -10.79255 -10.75994 -10.66239 -10.62619 -10.49151 -10.28421 -10.22558 -9.58763 -9.16308 -9.08317 -8.77413 -8.25958 -8.13657 -7.61907 -6.02042 -4.13517 3.21430 3.32360 3.33177 3.33967 4.08275 4.33351 4.69175 4.86350 5.02908 5.08309 5.16652 5.20108 5.37335 5.49331 5.52550 5.54194 5.58734 5.65786 5.77006 5.83080 5.92627 5.98468 6.03173 6.04024 6.06790 6.13690 6.17613 6.34346 6.37126 6.39967 6.46921 6.60293 6.61169 6.64350 6.76561 6.92058 7.02603 7.18606 7.30441 7.59640 7.71559 7.81850 7.99712 8.36073 8.81424 8.98607 9.48285 9.55434 10.94258 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.006494 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.791594 B = 4310.390515 C = 5092.586694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.629 5.629 4 C 0.704 3.296 5 O -0.605 6.605 6 N -0.706 5.706 7 C 0.178 3.822 8 C 0.039 3.961 9 C -0.498 4.498 10 H 0.060 0.940 11 C 0.078 3.922 12 N -0.859 5.859 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.196 4.196 18 C -0.212 4.212 19 C 0.160 3.840 20 H 0.099 0.901 21 C -0.161 4.161 22 C -0.105 4.105 23 C -0.145 4.145 24 C -0.142 4.142 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.394 0.606 31 H 0.017 0.983 32 H 0.110 0.890 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -2.866 -12.631 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.367 5.367 4 C 0.406 3.594 5 O -0.485 6.485 6 N -0.358 5.358 7 C 0.054 3.946 8 C 0.038 3.962 9 C -0.535 4.535 10 H 0.078 0.922 11 C -0.127 4.127 12 N -0.494 5.494 13 Si 0.710 3.290 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.235 4.235 18 C -0.249 4.249 19 C 0.055 3.945 20 H 0.117 0.883 21 C -0.219 4.219 22 C -0.125 4.125 23 C -0.202 4.202 24 C -0.200 4.200 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.229 0.771 31 H 0.035 0.965 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.143 -1.872 -12.576 13.373 hybrid contribution 0.520 -1.360 0.021 1.456 sum -3.622 -3.232 -12.555 13.461 Atomic orbital electron populations 1.22315 0.96389 1.01742 1.02708 1.21346 0.94044 0.83647 1.02611 1.47102 1.70367 1.13645 1.05613 1.15898 0.78265 0.84832 0.80443 1.90817 1.56476 1.14911 1.86254 1.45019 1.74244 1.11774 1.04754 1.20840 1.01607 0.92069 0.80041 1.19209 0.90430 0.96164 0.90354 1.20477 0.93324 0.95062 1.44607 0.92211 1.24921 0.97491 0.95293 0.95002 1.69906 1.18276 1.19598 1.41595 0.86682 0.81175 0.83223 0.77874 1.19730 1.20868 1.21017 1.22906 1.05950 0.96521 0.98086 1.22943 0.94938 0.99640 1.07425 1.20834 0.93062 0.98089 0.82498 0.88285 1.22269 0.98539 1.01807 0.99290 1.21486 0.96064 0.99592 0.95356 1.21858 1.01036 1.00863 0.96474 1.21745 0.96612 1.02102 0.99519 0.92331 0.92074 0.92108 0.90745 0.90824 0.77100 0.96520 0.87227 0.92794 0.90263 0.91549 0.91454 0.90720 0.92551 0.92427 0.91823 0.91407 0.92510 0.92825 0.92483 0.93424 0.92614 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.00 37.16 0.37 -1.73 16 2 C 0.11 1.47 5.14 -4.04 -0.02 1.45 16 3 N -0.63 -10.44 1.62 -171.80 -0.28 -10.72 16 4 C 0.70 15.05 8.21 -86.92 -0.71 14.34 16 5 O -0.60 -15.18 15.67 5.28 0.08 -15.10 16 6 N -0.71 -15.32 5.12 -65.22 -0.33 -15.65 16 7 C 0.18 4.29 4.76 -4.04 -0.02 4.27 16 8 C 0.04 0.93 1.96 -155.66 -0.31 0.63 16 9 C -0.50 -12.70 8.40 -34.44 -0.29 -12.99 16 10 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 11 C 0.08 2.02 5.16 -17.82 -0.09 1.93 16 12 N -0.86 -23.39 10.71 55.43 0.59 -22.79 16 13 Si 0.88 20.21 29.55 -169.99 -5.02 15.19 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.20 -4.36 9.96 -26.70 -0.27 -4.62 16 18 C -0.21 -4.43 9.92 -26.70 -0.26 -4.70 16 19 C 0.16 2.32 2.21 -67.93 -0.15 2.17 16 20 H 0.10 1.72 6.92 -51.93 -0.36 1.36 16 21 C -0.16 -1.87 7.91 37.16 0.29 -1.58 16 22 C -0.11 -1.34 2.36 -90.62 -0.21 -1.55 16 23 C -0.14 -1.50 8.84 37.16 0.33 -1.17 16 24 C -0.14 -2.15 9.04 37.16 0.34 -1.82 16 25 H 0.06 0.67 6.16 -51.93 -0.32 0.35 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.86 6.45 -51.93 -0.33 0.53 16 29 H 0.07 1.10 6.41 -51.93 -0.33 0.77 16 30 H 0.39 8.11 5.85 -40.82 -0.24 7.87 16 31 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.11 3.05 5.98 -51.93 -0.31 2.73 16 33 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.06 0.59 6.66 -51.93 -0.35 0.24 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 41 H 0.07 0.80 6.67 -51.93 -0.35 0.45 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.51 6.43 -51.92 -0.33 0.18 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.08 7.60 -51.93 -0.39 0.68 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -28.78 363.21 -8.76 -37.54 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.27 Total: 11.42 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.01 Total: -5.36 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.02 Total: -49.17 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.08 Total: -15.10 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.78 -8.76 -37.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331737669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.141 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds