Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47051 * 2 1 4 4 C 1.34772 * 120.00330 * 84.09219 * 3 2 1 5 5 O 1.21589 * 120.00497 * 185.87420 * 4 3 2 6 6 N 1.34774 * 120.00154 * 5.88055 * 4 3 2 7 7 C 1.46493 * 120.00629 * 174.76208 * 6 4 3 8 8 C 1.52998 * 109.47670 * 184.88461 * 7 6 4 9 9 C 1.50698 * 115.55181 * 305.37547 * 8 7 6 10 10 H 1.08000 * 120.00408 * 144.28104 * 9 8 7 11 11 C 1.37882 * 119.99835 * 324.27540 * 9 8 7 12 12 N 1.31519 * 119.99801 * 3.36342 * 11 9 8 13 13 Si 1.86797 * 120.00028 * 183.35733 * 11 9 8 14 14 H 1.48501 * 109.47326 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47053 * 120.00555 * 13 11 9 16 16 H 1.48506 * 109.46962 * 240.00326 * 13 11 9 17 17 C 1.52998 * 117.50225 * 159.69745 * 8 7 6 18 18 C 1.52997 * 117.49730 * 91.03802 * 8 7 6 19 19 C 1.46500 * 119.99849 * 264.09299 * 3 2 1 20 20 H 1.09001 * 109.47140 * 235.63212 * 19 3 2 21 21 C 1.53002 * 109.47094 * 355.62910 * 19 3 2 22 22 C 1.52998 * 109.47173 * 115.62898 * 19 3 2 23 23 C 1.53008 * 109.46874 * 179.00044 * 22 19 3 24 24 C 1.53001 * 109.47161 * 298.99710 * 22 19 3 25 25 H 1.09002 * 109.46788 * 66.33114 * 1 2 3 26 26 H 1.08998 * 109.46970 * 186.33418 * 1 2 3 27 27 H 1.08996 * 109.46940 * 306.33731 * 1 2 3 28 28 H 1.08996 * 109.46844 * 239.99634 * 2 1 3 29 29 H 1.09000 * 109.47074 * 119.99691 * 2 1 3 30 30 H 0.97009 * 119.99775 * 355.03715 * 6 4 3 31 31 H 1.09001 * 109.46918 * 304.88888 * 7 6 4 32 32 H 1.09002 * 109.47257 * 64.88699 * 7 6 4 33 33 H 0.96995 * 119.99942 * 175.00793 * 12 11 9 34 34 H 1.09006 * 117.49744 * 0.02562 * 17 8 7 35 35 H 1.09002 * 117.49963 * 145.02264 * 17 8 7 36 36 H 1.09003 * 117.50068 * 214.98111 * 18 8 7 37 37 H 1.09008 * 117.50146 * 359.97438 * 18 8 7 38 38 H 1.09005 * 109.47028 * 180.02562 * 21 19 3 39 39 H 1.09007 * 109.47035 * 299.99788 * 21 19 3 40 40 H 1.08994 * 109.47145 * 59.99835 * 21 19 3 41 41 H 1.08999 * 109.47367 * 58.99975 * 22 19 3 42 42 H 1.08997 * 109.47222 * 60.00353 * 23 22 19 43 43 H 1.09007 * 109.46705 * 179.97438 * 23 22 19 44 44 H 1.08998 * 109.46811 * 299.99464 * 23 22 19 45 45 H 1.09004 * 109.47034 * 185.23099 * 24 22 19 46 46 H 1.09004 * 109.47251 * 305.23445 * 24 22 19 47 47 H 1.08996 * 109.46590 * 65.23225 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1297 2.0566 1.1609 5 8 2.4321 3.2343 1.1526 6 7 1.9061 1.4267 2.3312 7 6 2.1382 2.1275 3.5965 8 6 1.9283 1.1590 4.7621 9 6 0.5971 0.4531 4.7891 10 1 0.5344 -0.5685 5.1339 11 6 -0.5408 1.1114 4.3735 12 7 -0.4554 2.3322 3.8917 13 14 -2.2039 0.2695 4.4948 14 1 -2.0299 -1.0902 5.0660 15 1 -3.0987 1.0652 5.3730 16 1 -2.8051 0.1638 3.1409 17 6 2.5621 1.5231 6.1062 18 6 3.1483 0.3855 5.2663 19 6 2.3856 2.0282 -1.2620 20 1 3.4115 2.3911 -1.1992 21 6 2.2711 1.0180 -2.4053 22 6 1.4436 3.2049 -1.5249 23 6 1.8428 3.8959 -2.8304 24 6 0.0065 2.6922 -1.6380 25 1 -0.3633 0.4126 -0.9412 26 1 -0.3633 -1.0214 0.1134 27 1 -0.3633 0.6089 0.8278 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5952 0.5078 2.3357 31 1 3.1595 2.5076 3.6193 32 1 1.4390 2.9591 3.6848 33 1 -1.2439 2.7681 3.5325 34 1 3.1283 2.4530 6.1602 35 1 2.0164 1.2518 7.0099 36 1 2.9880 -0.6337 5.6179 37 1 4.1004 0.5664 4.7673 38 1 2.5448 1.4993 -3.3443 39 1 2.9423 0.1797 -2.2181 40 1 1.2453 0.6551 -2.4682 41 1 1.5120 3.9160 -0.7017 42 1 1.7744 3.1847 -3.6536 43 1 1.1714 4.7339 -3.0179 44 1 2.8666 4.2611 -2.7498 45 1 -0.6518 3.5150 -1.9169 46 1 -0.0427 1.9134 -2.3991 47 1 -0.3097 2.2830 -0.6785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331737670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = -6.056778 kcal Electronic energy + Delta-G solvation = -24569.520293 eV Core-core repulsion = 21367.423536 eV Total energy + Delta-G solvation = -3202.096757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.89583 -37.34725 -36.27211 -34.46912 -32.61978 -32.07982 -30.34729 -29.18723 -26.96588 -25.89622 -25.15525 -23.85333 -22.31673 -21.20272 -19.86616 -19.20061 -18.25352 -17.29589 -16.27462 -15.91106 -15.44108 -14.81200 -14.50937 -14.11298 -13.93975 -13.64171 -13.35071 -13.07240 -12.78690 -12.68478 -12.45974 -12.19409 -12.05410 -12.01166 -11.67828 -11.49189 -11.35858 -11.08702 -10.93825 -10.73227 -10.67644 -10.61869 -10.50153 -10.47970 -10.27541 -10.17426 -9.60878 -9.05677 -8.90479 -8.82551 -8.25908 -8.12693 -7.53462 -5.94724 -4.16676 3.19822 3.30842 3.32907 3.39061 4.15834 4.30494 4.74202 4.99113 5.03130 5.18358 5.25050 5.35448 5.42659 5.44784 5.52709 5.56500 5.59081 5.70058 5.82342 5.90947 5.97147 6.05984 6.06740 6.07905 6.16544 6.19505 6.32931 6.35754 6.40043 6.54586 6.60497 6.65859 6.68391 6.75869 6.80357 6.92581 7.08363 7.24202 7.29878 7.63287 7.76319 7.89291 8.05842 8.36093 8.80316 9.06911 9.46395 9.62791 10.92161 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.006202 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.851250 B = 4513.546553 C = 5160.125418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 N -0.633 5.633 4 C 0.702 3.298 5 O -0.606 6.606 6 N -0.701 5.701 7 C 0.182 3.818 8 C 0.037 3.963 9 C -0.496 4.496 10 H 0.060 0.940 11 C 0.075 3.925 12 N -0.861 5.861 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.198 4.198 18 C -0.212 4.212 19 C 0.176 3.824 20 H 0.067 0.933 21 C -0.163 4.163 22 C -0.115 4.115 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.395 0.605 31 H 0.016 0.984 32 H 0.111 0.889 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -3.635 -12.069 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 N -0.371 5.371 4 C 0.404 3.596 5 O -0.486 6.486 6 N -0.353 5.353 7 C 0.058 3.942 8 C 0.036 3.964 9 C -0.533 4.533 10 H 0.078 0.922 11 C -0.129 4.129 12 N -0.497 5.497 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.237 4.237 18 C -0.249 4.249 19 C 0.071 3.929 20 H 0.085 0.915 21 C -0.221 4.221 22 C -0.135 4.135 23 C -0.200 4.200 24 C -0.204 4.204 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.230 0.770 31 H 0.034 0.966 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.859 -2.600 -12.045 12.650 hybrid contribution -1.138 -0.931 0.200 1.484 sum 1.721 -3.532 -11.845 12.479 Atomic orbital electron populations 1.22459 0.96384 1.02044 1.03049 1.21457 0.94378 0.83575 1.02524 1.47200 1.70927 1.13602 1.05408 1.15885 0.78781 0.84654 0.80313 1.90788 1.57226 1.14250 1.86325 1.44976 1.69420 1.16786 1.04070 1.20890 0.97200 0.96341 0.79737 1.19259 0.91192 0.95583 0.90376 1.20518 0.89651 0.98453 1.44717 0.92215 1.24985 0.98761 0.94540 0.94621 1.69893 1.29132 1.12010 1.38684 0.86589 0.84287 0.79640 0.77845 1.19800 1.20945 1.20930 1.22931 1.05594 0.97267 0.97917 1.22931 0.98577 0.95932 1.07476 1.20644 0.97767 0.92177 0.82266 0.91543 1.22249 1.02524 0.99191 0.98098 1.21566 0.95001 0.98153 0.98771 1.21844 1.01087 1.00005 0.97077 1.22011 0.96071 1.00250 1.02041 0.92159 0.92276 0.91246 0.90263 0.91117 0.76952 0.96627 0.87175 0.92842 0.91497 0.90298 0.90758 0.91443 0.91310 0.92283 0.91475 0.88621 0.92987 0.93000 0.92924 0.93662 0.93223 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 8.75 37.16 0.33 -2.28 16 2 C 0.10 1.46 5.21 -4.04 -0.02 1.44 16 3 N -0.63 -10.57 2.04 -171.80 -0.35 -10.92 16 4 C 0.70 15.04 8.00 -86.92 -0.70 14.34 16 5 O -0.61 -14.96 14.55 5.29 0.08 -14.88 16 6 N -0.70 -15.39 5.06 -65.23 -0.33 -15.72 16 7 C 0.18 4.41 4.61 -4.05 -0.02 4.39 16 8 C 0.04 0.87 2.06 -155.66 -0.32 0.55 16 9 C -0.50 -12.52 8.31 -34.44 -0.29 -12.81 16 10 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 11 C 0.08 1.91 5.32 -17.82 -0.09 1.82 16 12 N -0.86 -22.82 10.19 55.43 0.57 -22.25 16 13 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.20 -4.39 9.96 -26.70 -0.27 -4.66 16 18 C -0.21 -4.47 9.92 -26.70 -0.26 -4.74 16 19 C 0.18 2.55 2.47 -67.93 -0.17 2.38 16 20 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 21 C -0.16 -1.74 7.15 37.16 0.27 -1.47 16 22 C -0.12 -1.73 2.61 -90.62 -0.24 -1.96 16 23 C -0.14 -1.69 8.86 37.16 0.33 -1.36 16 24 C -0.15 -2.09 7.57 37.16 0.28 -1.81 16 25 H 0.06 0.80 5.13 -51.93 -0.27 0.53 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 28 H 0.08 0.89 5.45 -51.93 -0.28 0.61 16 29 H 0.07 1.03 6.53 -51.93 -0.34 0.69 16 30 H 0.40 8.36 5.75 -40.82 -0.23 8.13 16 31 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.11 3.04 5.90 -51.93 -0.31 2.73 16 33 H 0.26 6.80 8.32 -40.82 -0.34 6.47 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 38 H 0.07 0.63 6.45 -51.93 -0.34 0.30 16 39 H 0.06 0.58 7.15 -51.92 -0.37 0.21 16 40 H 0.07 0.70 5.09 -51.93 -0.26 0.44 16 41 H 0.10 1.84 6.27 -51.93 -0.33 1.51 16 42 H 0.05 0.52 6.45 -51.93 -0.34 0.19 16 43 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.60 5.70 -51.93 -0.30 0.31 16 47 H 0.06 1.10 5.58 -51.93 -0.29 0.81 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -28.01 350.52 -8.78 -36.79 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -7.83 Total: 12.93 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.17 Total: -6.16 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.12 Total: -48.89 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.01 -8.78 -36.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331737670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.735 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds