Wall clock time and date at job start Tue Mar 31 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46908 * 110.99490 * 2 1 4 4 C 1.52998 * 109.47252 * 293.95251 * 3 2 1 5 5 H 1.09003 * 109.46959 * 60.00315 * 4 3 2 6 6 O 1.42896 * 109.47182 * 300.00559 * 4 3 2 7 7 C 1.53002 * 109.47157 * 179.97438 * 4 3 2 8 8 N 1.46899 * 109.46818 * 181.15121 * 7 4 3 9 9 C 1.46900 * 111.00021 * 199.81840 * 8 7 4 10 10 C 1.50701 * 109.47250 * 170.00422 * 9 8 7 11 11 H 1.07994 * 119.99759 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99896 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99955 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99882 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47033 * 59.99976 * 14 12 10 16 16 H 1.48502 * 109.46875 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46957 * 299.99319 * 14 12 10 18 18 C 1.46898 * 110.99924 * 75.87006 * 8 7 4 19 19 C 1.53001 * 109.47274 * 58.09742 * 18 8 7 20 20 C 1.52992 * 117.50254 * 245.86737 * 19 18 8 21 21 C 1.52998 * 117.50075 * 177.20629 * 19 18 8 22 22 C 1.46892 * 111.00191 * 123.94848 * 2 1 3 23 23 C 1.53006 * 117.49661 * 124.79652 * 22 2 1 24 24 C 1.53002 * 117.49584 * 56.13897 * 22 2 1 25 25 H 1.08998 * 109.47158 * 60.00170 * 1 2 3 26 26 H 1.08998 * 109.46539 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47210 * 299.99970 * 1 2 3 28 28 H 1.08999 * 109.47054 * 173.95028 * 3 2 1 29 29 H 1.09004 * 109.47267 * 53.95532 * 3 2 1 30 30 H 0.96705 * 113.99794 * 299.99689 * 6 4 3 31 31 H 1.08998 * 109.46930 * 61.15935 * 7 4 3 32 32 H 1.08996 * 109.47035 * 301.15352 * 7 4 3 33 33 H 1.09002 * 109.47011 * 290.00729 * 9 8 7 34 34 H 1.09007 * 109.46709 * 50.00236 * 9 8 7 35 35 H 0.97007 * 119.99988 * 180.02562 * 13 12 10 36 36 H 1.09008 * 109.47024 * 298.09937 * 18 8 7 37 37 H 1.09004 * 109.47726 * 178.09795 * 18 8 7 38 38 H 1.09005 * 115.55113 * 31.54363 * 19 18 8 39 39 H 1.09006 * 117.49942 * 0.02562 * 20 19 18 40 40 H 1.09005 * 117.50220 * 145.02031 * 20 19 18 41 41 H 1.09002 * 117.50237 * 214.98246 * 21 19 18 42 42 H 1.09009 * 117.50181 * 0.02562 * 21 19 18 43 43 H 1.09000 * 115.55621 * 270.46600 * 22 2 1 44 44 H 1.08994 * 117.49813 * 0.02562 * 23 22 2 45 45 H 1.08996 * 117.49509 * 145.02231 * 23 22 2 46 46 H 1.08993 * 117.50017 * 214.97497 * 24 22 2 47 47 H 1.09000 * 117.50177 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.6314 2.0575 -1.3182 5 1 0.5471 2.0845 -1.4265 6 8 2.2008 1.3287 -2.4076 7 6 2.1790 3.4862 -1.3180 8 7 1.8059 4.1538 -2.5721 9 6 2.6710 5.3129 -2.8292 10 6 2.4267 5.8221 -4.2264 11 1 1.7017 5.3332 -4.8601 12 6 3.1297 6.9113 -4.6958 13 7 4.0130 7.5062 -3.9241 14 14 2.8274 7.5420 -6.4280 15 1 1.4052 7.9460 -6.5665 16 1 3.7019 8.7138 -6.6877 17 1 3.1346 6.4681 -7.4064 18 6 0.3904 4.5463 -2.5586 19 6 0.1290 5.4718 -1.3687 20 6 -0.7909 4.9554 -0.2606 21 6 -1.2810 6.0458 -1.2164 22 6 1.9955 -0.7658 1.1376 23 6 2.9718 -1.9036 0.8320 24 6 1.5427 -2.2203 1.2801 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3446 0.1083 29 1 1.5610 1.9275 0.8309 30 1 3.1652 1.2643 -2.3763 31 1 3.2651 3.4589 -1.2302 32 1 1.7600 4.0357 -0.4751 33 1 2.4456 6.1009 -2.1106 34 1 3.7151 5.0165 -2.7277 35 1 4.5073 8.2728 -4.2543 36 1 -0.2327 3.6561 -2.4703 37 1 0.1490 5.0682 -3.4847 38 1 0.9651 6.1061 -1.0739 39 1 -1.2096 3.9559 -0.3791 40 1 -0.5602 5.2500 0.7632 41 1 -1.3727 7.0575 -0.8211 42 1 -2.0227 5.7638 -1.9638 43 1 2.1566 -0.1969 2.0532 44 1 3.2236 -2.0836 -0.2131 45 1 3.7747 -2.0834 1.5468 46 1 1.4063 -2.6084 2.2894 47 1 0.8539 -2.6088 0.5300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336785669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:52 Heat of formation + Delta-G solvation = 14.563395 kcal Electronic energy + Delta-G solvation = -23223.856978 eV Core-core repulsion = 20022.654379 eV Total energy + Delta-G solvation = -3201.202599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.06539 -38.14071 -36.60315 -34.79143 -33.88524 -32.42668 -29.75075 -27.34863 -26.84184 -25.51223 -23.42340 -22.41225 -22.08041 -21.59379 -21.02707 -20.42403 -19.07523 -16.79536 -16.32678 -15.93826 -15.61758 -15.32791 -15.04202 -14.78384 -14.34909 -14.24944 -13.71627 -13.60988 -13.24459 -13.07245 -12.73022 -12.13906 -11.93253 -11.65583 -11.51340 -11.44262 -11.41238 -11.27867 -11.02899 -10.95343 -10.77299 -10.67480 -10.62961 -10.38788 -10.23958 -10.04977 -9.87085 -9.47889 -9.38160 -9.02662 -8.39718 -8.32021 -7.11423 -5.99300 -3.99468 3.36638 3.40129 3.43820 3.60261 3.65403 4.17230 4.45733 4.74590 4.76209 4.81190 4.90963 5.06694 5.10752 5.14843 5.19656 5.30761 5.31237 5.37566 5.45640 5.46623 5.55932 5.62374 5.69285 5.70520 5.76204 5.81887 5.84465 5.93543 5.94736 6.04447 6.15497 6.22709 6.34302 6.38117 6.47405 6.52677 6.87926 6.95275 7.04662 7.32039 7.39554 7.84314 8.10534 8.22336 8.28421 8.59770 9.07825 9.64312 11.11540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003983 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.365412 B = 7028.974995 C = 7874.220675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.502 5.502 3 C 0.026 3.974 4 C 0.123 3.877 5 H 0.090 0.910 6 O -0.535 6.535 7 C 0.021 3.979 8 N -0.517 5.517 9 C 0.192 3.808 10 C -0.502 4.502 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.095 3.905 19 C -0.171 4.171 20 C -0.190 4.190 21 C -0.178 4.178 22 C 0.003 3.997 23 C -0.163 4.163 24 C -0.177 4.177 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.367 0.633 31 H 0.066 0.934 32 H 0.038 0.962 33 H -0.005 1.005 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -13.575 11.938 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.225 5.225 3 C -0.103 4.103 4 C 0.063 3.937 5 H 0.108 0.892 6 O -0.338 6.338 7 C -0.109 4.109 8 N -0.239 5.239 9 C 0.067 3.933 10 C -0.541 4.541 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.201 1.201 18 C -0.034 4.034 19 C -0.191 4.191 20 C -0.227 4.227 21 C -0.216 4.216 22 C -0.106 4.106 23 C -0.201 4.201 24 C -0.214 4.214 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.213 0.787 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.012 0.988 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.565 -14.040 10.925 18.963 hybrid contribution 0.117 1.671 0.900 1.902 sum -6.448 -12.369 11.825 18.286 Atomic orbital electron populations 1.22407 0.87307 1.01903 1.00687 1.61701 1.07624 1.13512 1.39702 1.22903 1.00623 0.88091 0.98659 1.21800 0.98339 0.89198 0.84398 0.89238 1.86582 1.24637 1.75783 1.46829 1.22737 1.00168 0.94773 0.93196 1.62225 1.02538 1.29453 1.29730 1.19772 0.91610 0.85564 0.96368 1.21112 1.22124 1.12278 0.98545 0.91944 1.24961 0.95255 0.96683 0.97658 1.69948 1.25565 1.22171 1.36418 0.86588 0.78001 0.78185 0.84807 1.20332 1.21477 1.20145 1.21722 0.90388 0.95089 0.96178 1.23207 0.93841 1.02840 0.99164 1.22980 1.05901 0.98477 0.95337 1.22819 0.98431 0.97717 1.02612 1.22446 1.04647 0.89706 0.93806 1.23071 0.92415 1.01737 1.02832 1.23049 0.98774 0.97263 1.02355 0.90788 0.91551 0.95945 0.90484 0.94304 0.78731 0.91574 0.94395 0.98775 0.95525 0.92989 0.92831 0.89546 0.87508 0.89517 0.89858 0.89498 0.89111 0.89689 0.87966 0.89023 0.88972 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.18 60.07 0.55 0.82 16 2 N -0.50 -5.98 4.78 -234.88 -1.12 -7.10 16 3 C 0.03 0.32 4.58 -3.82 -0.02 0.30 16 4 C 0.12 1.82 2.90 -26.73 -0.08 1.74 16 5 H 0.09 1.38 5.35 -51.93 -0.28 1.11 16 6 O -0.54 -8.87 13.09 -35.23 -0.46 -9.33 16 7 C 0.02 0.36 4.51 -3.82 -0.02 0.34 16 8 N -0.52 -10.82 4.52 -236.06 -1.07 -11.88 16 9 C 0.19 4.87 4.56 -4.98 -0.02 4.85 16 10 C -0.50 -14.00 8.43 -34.44 -0.29 -14.29 16 11 H 0.06 1.74 7.14 -52.49 -0.37 1.37 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 14 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.10 1.82 5.33 -3.82 -0.02 1.80 16 19 C -0.17 -2.97 3.96 -90.62 -0.36 -3.33 16 20 C -0.19 -2.66 9.88 -26.70 -0.26 -2.92 16 21 C -0.18 -2.65 10.25 -26.70 -0.27 -2.92 16 22 C 0.00 0.03 5.27 -67.71 -0.36 -0.33 16 23 C -0.16 -1.50 10.46 -26.69 -0.28 -1.78 16 24 C -0.18 -1.54 9.73 -26.69 -0.26 -1.80 16 25 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 26 H 0.07 0.66 6.76 -51.93 -0.35 0.31 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.37 5.21 9.05 45.56 0.41 5.62 16 31 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 32 H 0.04 0.63 6.30 -51.93 -0.33 0.31 16 33 H -0.01 -0.15 6.14 -51.93 -0.32 -0.46 16 34 H 0.03 0.73 7.83 -51.93 -0.41 0.32 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.05 0.94 6.68 -51.92 -0.35 0.59 16 37 H 0.09 1.85 6.72 -51.93 -0.35 1.50 16 38 H 0.11 2.14 6.32 -51.93 -0.33 1.81 16 39 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 43 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.88 7.26 -51.93 -0.38 0.51 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -30.06 368.40 -10.72 -40.79 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.55 Total: 7.18 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.78 Total: -16.04 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -1.45 Total: -44.92 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.46 Total: -9.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.06 -10.72 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336785669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.349 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds